Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte16f12
         (846 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U13637-1|AAB60217.1| 1984|Drosophila melanogaster vitellogenin r...    30   4.6  
BT003478-1|AAO39481.1| 1937|Drosophila melanogaster RE59172p pro...    30   4.6  
AE014298-2008|AAF48349.2| 1937|Drosophila melanogaster CG1372-PA...    30   4.6  
AE014298-2007|AAS65339.1| 1984|Drosophila melanogaster CG1372-PB...    30   4.6  

>U13637-1|AAB60217.1| 1984|Drosophila melanogaster vitellogenin
            receptor protein.
          Length = 1984

 Score = 29.9 bits (64), Expect = 4.6
 Identities = 20/55 (36%), Positives = 27/55 (49%), Gaps = 3/55 (5%)
 Frame = -2

Query: 812  CPRSSSDLAPGQNNITK--SCA-DLYKSAENITKLVKSSVTRLLGTKECPKQSSE 657
            C   S +L  G ++ T   SCA D Y+   N+ K+   S  R  GT ECP+   E
Sbjct: 1223 CGDKSDELNCGTDSSTMNISCAEDQYQCTSNL-KICLPSAVRCNGTTECPRGEDE 1276


>BT003478-1|AAO39481.1| 1937|Drosophila melanogaster RE59172p protein.
          Length = 1937

 Score = 29.9 bits (64), Expect = 4.6
 Identities = 20/55 (36%), Positives = 27/55 (49%), Gaps = 3/55 (5%)
 Frame = -2

Query: 812  CPRSSSDLAPGQNNITK--SCA-DLYKSAENITKLVKSSVTRLLGTKECPKQSSE 657
            C   S +L  G ++ T   SCA D Y+   N+ K+   S  R  GT ECP+   E
Sbjct: 1223 CGDKSDELNCGTDSSTMNISCAEDQYQCTSNL-KICLPSTVRCNGTTECPRGEDE 1276


>AE014298-2008|AAF48349.2| 1937|Drosophila melanogaster CG1372-PA,
            isoform A protein.
          Length = 1937

 Score = 29.9 bits (64), Expect = 4.6
 Identities = 20/55 (36%), Positives = 27/55 (49%), Gaps = 3/55 (5%)
 Frame = -2

Query: 812  CPRSSSDLAPGQNNITK--SCA-DLYKSAENITKLVKSSVTRLLGTKECPKQSSE 657
            C   S +L  G ++ T   SCA D Y+   N+ K+   S  R  GT ECP+   E
Sbjct: 1223 CGDKSDELNCGTDSSTMNISCAEDQYQCTSNL-KICLPSTVRCNGTTECPRGEDE 1276


>AE014298-2007|AAS65339.1| 1984|Drosophila melanogaster CG1372-PB,
            isoform B protein.
          Length = 1984

 Score = 29.9 bits (64), Expect = 4.6
 Identities = 20/55 (36%), Positives = 27/55 (49%), Gaps = 3/55 (5%)
 Frame = -2

Query: 812  CPRSSSDLAPGQNNITK--SCA-DLYKSAENITKLVKSSVTRLLGTKECPKQSSE 657
            C   S +L  G ++ T   SCA D Y+   N+ K+   S  R  GT ECP+   E
Sbjct: 1223 CGDKSDELNCGTDSSTMNISCAEDQYQCTSNL-KICLPSTVRCNGTTECPRGEDE 1276


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 30,061,311
Number of Sequences: 53049
Number of extensions: 528395
Number of successful extensions: 2000
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1853
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1999
length of database: 24,988,368
effective HSP length: 84
effective length of database: 20,532,252
effective search space used: 4044853644
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)