Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte16f11
         (828 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|ch...   115   9e-27
SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha 2|Schizosacchar...   112   5e-26
SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces...    56   8e-09
SPAC3A12.12 |atp11||F1-ATPase chaperone Atp11 |Schizosaccharomyc...    29   0.80 
SPCC736.12c |||conserved protein|Schizosaccharomyces pombe|chr 3...    28   1.9  
SPAC22G7.02 |kap111||karyopherin Kap111|Schizosaccharomyces pomb...    27   3.2  
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ...    25   9.9  

>SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 455

 Score =  115 bits (276), Expect = 9e-27
 Identities = 52/67 (77%), Positives = 58/67 (86%)
 Frame = -1

Query: 828 AIAEAWGKLDHKFDLMYSKRAFVHWYVGEGMEEGEFSEAREDLAALERDYDEVAIETSDM 649
           +IAEAW +LDHKFDLMYSKRAFVHWYVGEGMEEGEFSEAREDLAALERDY+EV  ++ D 
Sbjct: 387 SIAEAWSRLDHKFDLMYSKRAFVHWYVGEGMEEGEFSEAREDLAALERDYEEVGQDSMDN 446

Query: 648 QPGADDE 628
           +    DE
Sbjct: 447 EMYEADE 453


>SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha
           2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 449

 Score =  112 bits (270), Expect = 5e-26
 Identities = 49/60 (81%), Positives = 56/60 (93%)
 Frame = -1

Query: 828 AIAEAWGKLDHKFDLMYSKRAFVHWYVGEGMEEGEFSEAREDLAALERDYDEVAIETSDM 649
           +IAEAW +LDHKFDLMYSKRAFVHWYVGEGMEEGEFSEAREDLAALERDY+EV  ++ ++
Sbjct: 383 SIAEAWSRLDHKFDLMYSKRAFVHWYVGEGMEEGEFSEAREDLAALERDYEEVGQDSMEV 442


>SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 448

 Score = 55.6 bits (128), Expect = 8e-09
 Identities = 26/70 (37%), Positives = 41/70 (58%), Gaps = 3/70 (4%)
 Frame = -1

Query: 828 AIAEAWGKLDHKFDLMYSKRAFVHWYVGEGMEEGEFSEAR---EDLAALERDYDEVAIET 658
           +I E + +L  +F  M+ ++AF+HWY GEGM+E EF+EA     DL +  + Y E  I+ 
Sbjct: 373 SIQEIFRRLGDQFSAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQEAGIDE 432

Query: 657 SDMQPGADDE 628
            D     ++E
Sbjct: 433 GDEDYEIEEE 442


>SPAC3A12.12 |atp11||F1-ATPase chaperone Atp11 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 286

 Score = 29.1 bits (62), Expect = 0.80
 Identities = 10/21 (47%), Positives = 16/21 (76%)
 Frame = -3

Query: 103 NVGDNIIRACSAKRVYVKVMS 41
           N+GD+I+ AC  K +Y K++S
Sbjct: 131 NIGDDILSACIPKEIYEKMLS 151


>SPCC736.12c |||conserved protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 437

 Score = 27.9 bits (59), Expect = 1.9
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = +3

Query: 687 VPELPNLLSLQRIRLPPSLRLHTNAQKLAWNT 782
           +PELPNL +L+ +  PPSL   +   +  W T
Sbjct: 15  IPELPNLEALRSLWPPPSLN-ESGDTRSVWTT 45


>SPAC22G7.02 |kap111||karyopherin Kap111|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 990

 Score = 27.1 bits (57), Expect = 3.2
 Identities = 9/22 (40%), Positives = 18/22 (81%)
 Frame = +2

Query: 56  INSLCTTCSYNIVTDINAHFSV 121
           I++LCTTC+ +++T+I+   +V
Sbjct: 575 IHTLCTTCASHLLTEIDGFMAV 596


>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 3655

 Score = 25.4 bits (53), Expect = 9.9
 Identities = 17/54 (31%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
 Frame = +1

Query: 640  AGLHV*RLNSHFIVISFQSC-QIFSRFREFAFLHPFAYIPMHKSSLGIHEVELV 798
            AG+ +  LN +  V S + C QIFS F E  F HP   +  +   + I  ++++
Sbjct: 1708 AGILLTYLNQN--VSSLEKCNQIFSIFYEVFFQHPSTNVYANDEGIKIGALQII 1759


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,290,034
Number of Sequences: 5004
Number of extensions: 66752
Number of successful extensions: 193
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 182
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 193
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 406444570
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)