Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte16f09
         (816 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomy...    26   5.6  
SPCC4G3.10c |rhp42|rhp4b|DNA repair protein Rhp42|Schizosaccharo...    26   7.4  
SPAC16A10.01 |||DUF1212 family protein|Schizosaccharomyces pombe...    26   7.4  

>SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 2052

 Score = 26.2 bits (55), Expect = 5.6
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = -2

Query: 809 QLCYF*LSIIIFWKSLKGLTEKIF 738
           +L YF L  + FWK L+GL  K++
Sbjct: 594 RLDYFLLFDLKFWKRLRGLLSKLY 617


>SPCC4G3.10c |rhp42|rhp4b|DNA repair protein
           Rhp42|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 686

 Score = 25.8 bits (54), Expect = 7.4
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +3

Query: 486 LVQHYKKGQPLGMFKIVKLSTYCVHFT 566
           L +  KKG    M K ++LS + +HFT
Sbjct: 133 LTKESKKGSSSAMDKSIRLSIHIMHFT 159


>SPAC16A10.01 |||DUF1212 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 830

 Score = 25.8 bits (54), Expect = 7.4
 Identities = 15/50 (30%), Positives = 22/50 (44%)
 Frame = -3

Query: 259 VYCSI*CVES*FVLLIRLYCVMCSVLGLSGKFSIKKTSIILKCAVFSCLI 110
           V+C    VE    L++  Y V C VL L  K  +     +L   +FS  +
Sbjct: 583 VFCFAALVEGAITLILPGYVVFCGVLELQSKNIVAGGVRMLYAVIFSLFL 632


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,067,788
Number of Sequences: 5004
Number of extensions: 60502
Number of successful extensions: 122
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 118
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 122
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 398435810
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)