Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte16f08
(852 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC191.09c |gst1||glutathione S-transferase Gst1|Schizosaccharo... 59 7e-10
SPCC965.07c |gst2||glutathione S-transferase Gst2|Schizosaccharo... 49 7e-07
SPAP14E8.02 |||transcription factor |Schizosaccharomyces pombe|c... 31 0.16
SPAC824.02 |||GPI inositol deacylase|Schizosaccharomyces pombe|c... 29 1.1
SPAC1B3.09c |||Noc2p-Noc3p complex subunit Noc2 family |Schizosa... 29 1.1
SPAC688.04c |gst3||glutathione S-transferase |Schizosaccharomyce... 28 1.5
SPCC4F11.04c |||mannosyltransferase complex subunit |Schizosacch... 26 5.9
SPAC1093.03 |||inositol polyphosphate phosphatase |Schizosacchar... 26 7.8
>SPCC191.09c |gst1||glutathione S-transferase
Gst1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 229
Score = 59.3 bits (137), Expect = 7e-10
Identities = 46/159 (28%), Positives = 76/159 (47%), Gaps = 6/159 (3%)
Frame = -2
Query: 626 AARAIGIPIQIEIVNLFKKEQLQESFLKLNPQHCVPTLDD---NNFVLWESRAIACYLAD 456
A + + + + VN K EQ L LNP VPTL D N++ +WES AI YLAD
Sbjct: 21 ALKELDLTYETRYVNFSKNEQKSPEHLALNPNGRVPTLIDHHNNDYTIWESDAILIYLAD 80
Query: 455 KYGKDDQ-WYPKDLQKRAVVNQRLYFDSASLYVKIRAICFPILFLGETEIK--QSLKDDL 285
KY + + P+D + V Q L+F ++ + + ++ E I ++++
Sbjct: 81 KYDTERKISLPRDHPEYYKVIQYLFFQASGQGIIWGQAGWFSVYHQELVISAITRYRNEI 140
Query: 284 NSTLSFLNQFLEKTKWVAADHPTIADTSIYASMSSILAV 168
L L L+ ++ A+ TIAD S + S ++ L +
Sbjct: 141 KRVLGVLEDILKDRDYLVANRFTIADLS-FISWNNFLEI 178
>SPCC965.07c |gst2||glutathione S-transferase
Gst2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 230
Score = 49.2 bits (112), Expect = 7e-07
Identities = 48/169 (28%), Positives = 76/169 (44%), Gaps = 7/169 (4%)
Frame = -2
Query: 686 MSSLKLYHFPVSGPSRG-ALLAARAIGIPIQIEIVNLFKKEQLQESFLKLNPQHCVPTLD 510
M+ LY GP+ +LA + + + + + K EQ + L LNP VPTL
Sbjct: 1 MAHFTLYSH-AGGPNPWKVVLALKELNLSYEQIFYDFQKGEQKCKEHLALNPNGRVPTLV 59
Query: 509 D---NNFVLWESRAIACYLADKYGKDDQ-WYPKDLQKRAVVNQRLYFDSASLYVKIRAIC 342
D N++ +WES AI YLADKY D + D + + Q L+F ++ V
Sbjct: 60 DHKNNDYTIWESDAILIYLADKYDTDRKISLSFDDPEYYKLIQYLFFQASGQGVIWGQAG 119
Query: 341 FPILFLGETEIK--QSLKDDLNSTLSFLNQFLEKTKWVAADHPTIADTS 201
+ F E + ++++ L L L+ ++ A+ TIAD S
Sbjct: 120 WFNFFHHEPVVSAVTRYRNEIKRVLGVLEDILKDRDYLVANKYTIADLS 168
>SPAP14E8.02 |||transcription factor |Schizosaccharomyces pombe|chr
1|||Manual
Length = 566
Score = 31.5 bits (68), Expect = 0.16
Identities = 20/54 (37%), Positives = 26/54 (48%)
Frame = -2
Query: 647 PSRGALLAARAIGIPIQIEIVNLFKKEQLQESFLKLNPQHCVPTLDDNNFVLWE 486
PS+ L A+ Q+E + K QL+ SFL N + DDNN VL E
Sbjct: 248 PSKDLLQKLLALEKDGQVEKSDCSKNTQLKPSFLPKNTDDLLNGTDDNNIVLRE 301
>SPAC824.02 |||GPI inositol deacylase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1142
Score = 28.7 bits (61), Expect = 1.1
Identities = 12/23 (52%), Positives = 15/23 (65%)
Frame = +3
Query: 3 EYILNNVFMSILLFDILFYGISK 71
EY +NNVF+ +L F L YG K
Sbjct: 1069 EYYINNVFLFLLSFYSLIYGAEK 1091
>SPAC1B3.09c |||Noc2p-Noc3p complex subunit Noc2 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 528
Score = 28.7 bits (61), Expect = 1.1
Identities = 13/34 (38%), Positives = 22/34 (64%)
Frame = +1
Query: 298 KLCLISVSPRNNIGKQIALILTYKDALSKYNLWF 399
K CL+S S RNN+ K++ L++T A+ ++ F
Sbjct: 418 KECLLSKSYRNNVRKEVILLMTEYFAIFSNSIAF 451
>SPAC688.04c |gst3||glutathione S-transferase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 242
Score = 28.3 bits (60), Expect = 1.5
Identities = 24/102 (23%), Positives = 46/102 (45%)
Frame = -2
Query: 671 LYHFPVSGPSRGALLAARAIGIPIQIEIVNLFKKEQLQESFLKLNPQHCVPTLDDNNFVL 492
L+H S +R + + +P +I++ + + ++ KL+P P + D+
Sbjct: 4 LHHLKNSRSTR-IVWMLEELKVPYEIKVYDRVDG-RAPPAYTKLSPLGKSPIVVDDGVTY 61
Query: 491 WESRAIACYLADKYGKDDQWYPKDLQKRAVVNQRLYFDSASL 366
ES AI +L KYG + +D+ + ++F ASL
Sbjct: 62 IESAAILEHLVRKYGPSFKPSEEDVAELEKYELWMHFSEASL 103
>SPCC4F11.04c |||mannosyltransferase complex subunit
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 345
Score = 26.2 bits (55), Expect = 5.9
Identities = 20/94 (21%), Positives = 42/94 (44%), Gaps = 4/94 (4%)
Frame = -2
Query: 611 GIPIQIEIVN-LFKKEQLQESFLKLNPQHCVPTLDDNNFVLWESRAIACYLADKYGKDDQ 435
G P+ +I++ +K ++ E + K Q C+ D ++LW ++AD Y
Sbjct: 78 GEPVIPKIIHQTWKTTEVPEGW-KGAQQSCIDLHPDYEYILWTDEMSRNFIADNYPWFLP 136
Query: 434 W---YPKDLQKRAVVNQRLYFDSASLYVKIRAIC 342
+ YP ++Q+ V+ + + Y+ + C
Sbjct: 137 YFDAYPFNVQRADVIRYFVLYHYGGNYIDLDDGC 170
>SPAC1093.03 |||inositol polyphosphate phosphatase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 832
Score = 25.8 bits (54), Expect = 7.8
Identities = 18/59 (30%), Positives = 31/59 (52%), Gaps = 4/59 (6%)
Frame = -2
Query: 389 LYFDSASLYVKIRAICFPILFLGETEIKQSLK-DDLNSTLSFLNQFL---EKTKWVAAD 225
L+FD + I I ++ E ++SL D+ S + +LNQFL +K +++A D
Sbjct: 323 LHFDRLFGHYGIPCIVLNLVKSSEKVKRESLLLDEFESAIQYLNQFLKDSQKIQYIAWD 381
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,433,265
Number of Sequences: 5004
Number of extensions: 73548
Number of successful extensions: 218
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 205
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 216
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 422462090
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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