Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte16f08
         (852 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine beta-sy...    24   1.5  
U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive o...    23   4.7  
DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.    23   4.7  
AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin ...    23   4.7  
AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive...    22   8.2  

>AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine
           beta-synthase protein.
          Length = 504

 Score = 24.2 bits (50), Expect = 1.5
 Identities = 10/32 (31%), Positives = 21/32 (65%)
 Frame = -2

Query: 329 FLGETEIKQSLKDDLNSTLSFLNQFLEKTKWV 234
           F+ +  +KQ +K   ++TL ++++ LEK  +V
Sbjct: 437 FVDKAMVKQYVKVKHSATLGYISRVLEKEPYV 468


>U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive
           opsin protein.
          Length = 377

 Score = 22.6 bits (46), Expect = 4.7
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = +1

Query: 16  IMFL*AFYCLIFFFTASPNVRAPSS 90
           IM L    C+I+ F+ S ++R PS+
Sbjct: 69  IMSLVGNCCVIWIFSTSKSLRTPSN 93


>DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.
          Length = 471

 Score = 22.6 bits (46), Expect = 4.7
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = -3

Query: 238 GWQLITPQLQTHLFMH 191
           G++ ITP +Q HL +H
Sbjct: 311 GYKYITPLIQKHLKIH 326


>AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin
           protein.
          Length = 377

 Score = 22.6 bits (46), Expect = 4.7
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = +1

Query: 16  IMFL*AFYCLIFFFTASPNVRAPSS 90
           IM L    C+I+ F+ S ++R PS+
Sbjct: 69  IMSLVGNCCVIWIFSTSKSLRTPSN 93


>AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive
           opsin protein.
          Length = 371

 Score = 21.8 bits (44), Expect = 8.2
 Identities = 7/14 (50%), Positives = 9/14 (64%)
 Frame = +2

Query: 140 CLENLIYPIQQPKY 181
           CL+  +Y I  PKY
Sbjct: 322 CLDPYVYAISHPKY 335


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 230,438
Number of Sequences: 438
Number of extensions: 5305
Number of successful extensions: 8
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27431202
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)