Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte16f07
(876 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC23G3.06 |||U3 snoRNP protein Nop58 |Schizosaccharomyces pomb... 30 0.50
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ... 29 0.87
SPBC16A3.07c |nrm1||negative regulator of MBF|Schizosaccharomyce... 29 1.1
SPAC29B12.07 |sec16||multidomain vesicle coat component Sec16|Sc... 28 2.0
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce... 27 2.7
SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo... 27 3.5
SPAC12B10.16c |mug157||conserved protein |Schizosaccharomyces po... 27 3.5
SPAC1783.05 |hrp1|chd1|ATP-dependent DNA helicase Hrp1|Schizosac... 27 4.6
SPBC83.16c |||conserved fungal protein|Schizosaccharomyces pombe... 27 4.6
SPAC323.07c |||MatE family transporter|Schizosaccharomyces pombe... 27 4.6
SPAC1B3.09c |||Noc2p-Noc3p complex subunit Noc2 family |Schizosa... 26 6.1
SPCC1494.05c |ubp12||ubiquitin C-terminal hydrolase Ubp12|Schizo... 26 8.1
SPBC1711.12 |||serine peptidase |Schizosaccharomyces pombe|chr 2... 26 8.1
SPBC16C6.08c |qcr6||ubiquinol-cytochrome-c reductase complex sub... 26 8.1
SPCC18.07 |rpc53||DNA-directed RNA polymerase III complex subuni... 26 8.1
SPAC1F12.07 |||phosphoserine aminotransferase |Schizosaccharomyc... 26 8.1
>SPAC23G3.06 |||U3 snoRNP protein Nop58 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 508
Score = 29.9 bits (64), Expect = 0.50
Identities = 19/75 (25%), Positives = 33/75 (44%), Gaps = 2/75 (2%)
Frame = -2
Query: 335 SKVGEAVEKTNNKDTKIEFEDVRKALIERGLIDKDTLDSHLNFE--IKIQNKFKDAPRGM 162
S VG+A K K ++ +L L DKDT + ++ E I+++N+ + G
Sbjct: 346 SLVGQANSKNKGKIARVLATKAALSLRVDALSDKDTTNGNIGLENRIRVENRLRSLEGGK 405
Query: 161 PFQSRNMPFGQRKIR 117
P Q K++
Sbjct: 406 LLPLPTAPVQQSKVQ 420
>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 3655
Score = 29.1 bits (62), Expect = 0.87
Identities = 13/45 (28%), Positives = 23/45 (51%)
Frame = -2
Query: 683 PKYCVVLIMAACYKENTPKSLEYATKLWSDMASTGTLPLRRAATS 549
P Y + ++ Y +N L+Y + + D TG + L+RA+ S
Sbjct: 3372 PSYVTMQTISDEYCKNRGMPLDYGIRFYFDRLQTGLIQLKRASAS 3416
>SPBC16A3.07c |nrm1||negative regulator of MBF|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 342
Score = 28.7 bits (61), Expect = 1.1
Identities = 14/53 (26%), Positives = 28/53 (52%)
Frame = -2
Query: 464 RNIKAMALADMGRVDDAIPILRSVLNIDSPDQKDKHTFFEETISKVGEAVEKT 306
RN++A+ +AD ++ + ++SV + +S ++K+ T E K KT
Sbjct: 64 RNVRAVEIADENACEEPVLKIKSVSSTESEEEKESSTEIGEKQEKETHLEPKT 116
>SPAC29B12.07 |sec16||multidomain vesicle coat component
Sec16|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1995
Score = 27.9 bits (59), Expect = 2.0
Identities = 15/38 (39%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Frame = -2
Query: 380 SPDQKDKHTFFEETISKVGEAVEKTNNKDT-KIEFEDV 270
S D D HT +++ + EK NNKDT K+E D+
Sbjct: 408 SEDSTDLHTNEIPNVAQPPSSFEKENNKDTSKLENPDI 445
>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1036
Score = 27.5 bits (58), Expect = 2.7
Identities = 22/67 (32%), Positives = 35/67 (52%), Gaps = 1/67 (1%)
Frame = +1
Query: 244 SPLSISAFLTSSNSILVSLLFVFSTASPT-LDIVSSKNVCLSF*SGESMFNTLRNIGIAS 420
S + S+ LTSS+S+ S ++ASPT + SS S S + ++L + I S
Sbjct: 77 SSSAASSSLTSSSSLASSSTNSTTSASPTSSSLTSSSATSSSLASSSTTSSSLASSSITS 136
Query: 421 STLPISA 441
S+L S+
Sbjct: 137 SSLASSS 143
>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1224
Score = 27.1 bits (57), Expect = 3.5
Identities = 11/20 (55%), Positives = 13/20 (65%)
Frame = -2
Query: 602 WSDMASTGTLPLRRAATSFA 543
W+D G LP+RRAA S A
Sbjct: 862 WNDAPMLGQLPMRRAAPSMA 881
>SPAC12B10.16c |mug157||conserved protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 509
Score = 27.1 bits (57), Expect = 3.5
Identities = 11/19 (57%), Positives = 13/19 (68%)
Frame = +2
Query: 722 QRPCTSHQTFHDNTVNQVI 778
QRP TS +TFH +V Q I
Sbjct: 50 QRPATSCRTFHSKSVEQTI 68
>SPAC1783.05 |hrp1|chd1|ATP-dependent DNA helicase
Hrp1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1373
Score = 26.6 bits (56), Expect = 4.6
Identities = 18/80 (22%), Positives = 37/80 (46%), Gaps = 2/80 (2%)
Frame = -2
Query: 488 QRQHYITIRNIKAM--ALADMGRVDDAIPILRSVLNIDSPDQKDKHTFFEETISKVGEAV 315
+R+ + + I+ + A+ G VD+ + + + D K ++ + + EAV
Sbjct: 1003 RREEMVREKEIRLLYRAMIKFGLVDERFDTIVKEAELQATDPKRIYSLSADMVKACDEAV 1062
Query: 314 EKTNNKDTKIEFEDVRKALI 255
E+ DTK + RKA++
Sbjct: 1063 ERLGADDTK--NKQPRKAIL 1080
>SPBC83.16c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 563
Score = 26.6 bits (56), Expect = 4.6
Identities = 10/22 (45%), Positives = 15/22 (68%)
Frame = -2
Query: 458 IKAMALADMGRVDDAIPILRSV 393
IKA L ++GR D+ PIL+ +
Sbjct: 466 IKATVLRNLGRTDEVFPILQKI 487
>SPAC323.07c |||MatE family transporter|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 533
Score = 26.6 bits (56), Expect = 4.6
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = +1
Query: 235 LSMSPLSISAFLTSSNSILVSLLFVFSTASPT 330
L +PL+ + L +S S+L + F F+ AS T
Sbjct: 344 LGTAPLASQSILLTSTSLLFQIPFAFAVASST 375
>SPAC1B3.09c |||Noc2p-Noc3p complex subunit Noc2 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 528
Score = 26.2 bits (55), Expect = 6.1
Identities = 20/86 (23%), Positives = 37/86 (43%)
Frame = -2
Query: 347 EETISKVGEAVEKTNNKDTKIEFEDVRKALIERGLIDKDTLDSHLNFEIKIQNKFKDAPR 168
+ET+ V +D ++E+ ++ L S L+ + I+ KF P
Sbjct: 136 KETLDNVDFDARSKILQDLRLEYAEILLTKFNFEKKGYQNLSSALDTILHIK-KFSKFPN 194
Query: 167 GMPFQSRNMPFGQRKIRKDLQ*LLNY 90
G+ Q N+ K R+D+Q +N+
Sbjct: 195 GLVTQLCNIFVNHSKAREDIQKAVNH 220
>SPCC1494.05c |ubp12||ubiquitin C-terminal hydrolase
Ubp12|Schizosaccharomyces pombe|chr 3|||Manual
Length = 979
Score = 25.8 bits (54), Expect = 8.1
Identities = 14/53 (26%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
Frame = -2
Query: 257 IERGLIDKDTLDSHLN-FEIKI-QNKFKDAPRGMPFQSRNMPFGQRKIRKDLQ 105
+++G +D D S FE+++ ++F+ P G N+P + +KDL+
Sbjct: 672 VQKGPLDVDMDHSQTPLFEMRVFHDRFEKIPTGWNMSVSNLPLLTERDKKDLE 724
>SPBC1711.12 |||serine peptidase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 683
Score = 25.8 bits (54), Expect = 8.1
Identities = 18/42 (42%), Positives = 23/42 (54%)
Frame = +1
Query: 304 FVFSTASPTLDIVSSKNVCLSF*SGESMFNTLRNIGIASSTL 429
FV A+P L I SSK+ L+ G + FN L+ GI S L
Sbjct: 601 FVNYWATPELVIHSSKDYRLTESEGIAAFNVLQYKGIPSRLL 642
>SPBC16C6.08c |qcr6||ubiquinol-cytochrome-c reductase complex
subunit 8|Schizosaccharomyces pombe|chr 2|||Manual
Length = 214
Score = 25.8 bits (54), Expect = 8.1
Identities = 12/35 (34%), Positives = 21/35 (60%)
Frame = -2
Query: 386 IDSPDQKDKHTFFEETISKVGEAVEKTNNKDTKIE 282
+D+PD K+ FEE ++V + VE+ + + IE
Sbjct: 158 MDAPDCKEVKHHFEECTARVTKKVEQGDKSEDCIE 192
>SPCC18.07 |rpc53||DNA-directed RNA polymerase III complex subunit
Rpc53|Schizosaccharomyces pombe|chr 3|||Manual
Length = 330
Score = 25.8 bits (54), Expect = 8.1
Identities = 20/92 (21%), Positives = 41/92 (44%)
Frame = -2
Query: 437 DMGRVDDAIPILRSVLNIDSPDQKDKHTFFEETISKVGEAVEKTNNKDTKIEFEDVRKAL 258
D+G D +PI+ + +S D+K KH E I + K + + ++ D++
Sbjct: 124 DIGGKDLLVPIITDRMLPESNDEKLKH-HAESAIHTT--VINKEDEEQERVAL-DLQSLA 179
Query: 257 IERGLIDKDTLDSHLNFEIKIQNKFKDAPRGM 162
GL +++ ++ H ++ + PR M
Sbjct: 180 QHLGLTEQEGMEDHFKDQMVLMQFPDKLPRFM 211
>SPAC1F12.07 |||phosphoserine aminotransferase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 389
Score = 25.8 bits (54), Expect = 8.1
Identities = 11/22 (50%), Positives = 16/22 (72%)
Frame = +2
Query: 635 YSLYNKLPLSTPHSI*ETLSYL 700
+SLYN LP++T H+I L Y+
Sbjct: 261 HSLYNTLPVATLHAINLGLEYM 282
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,729,064
Number of Sequences: 5004
Number of extensions: 81790
Number of successful extensions: 263
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 250
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 263
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 438479610
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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