Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte16f07
         (876 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC025721-6|AAK29909.1|  191|Caenorhabditis elegans Hypothetical ...    38   0.009
Z67884-4|CAH60753.1|  905|Caenorhabditis elegans Hypothetical pr...    29   4.4  
Z67884-3|CAA91809.2|  921|Caenorhabditis elegans Hypothetical pr...    29   4.4  
U29378-4|AAA68727.2|  667|Caenorhabditis elegans Temporarily ass...    29   4.4  
U53155-8|AAC48263.1|  284|Caenorhabditis elegans Hypothetical pr...    28   7.6  

>AC025721-6|AAK29909.1|  191|Caenorhabditis elegans Hypothetical
           protein Y48G8AL.7 protein.
          Length = 191

 Score = 37.9 bits (84), Expect = 0.009
 Identities = 35/163 (21%), Positives = 79/163 (48%), Gaps = 3/163 (1%)
 Frame = -2

Query: 647 YKENTPKSLEYATKLWSDMASTGTLPLRRAA-TSFAGLALKQGAPHIALESISGQRQHYI 471
           ++ ++ ++LE +  L     ST  +  R AA T+ + + LK+      +  ++      I
Sbjct: 3   FQSSSKENLEKSKTLVRKTGSTCEISCRSAAFTAASAMKLKKWNDVDEMLQLTTLCPPAI 62

Query: 470 TIRNIKAMALADMGRVDDAIPILRSVLNIDSP-DQKDKHTFFEETISKVGEAVEKTNNKD 294
           T  +I+  ALA+  ++D+A+  L  VL  +        ++  +E +  + EA++      
Sbjct: 63  T-SSIRIKALAEQSKLDEALLELEKVLMFEEEVFSSGNYSVSDEALDSLCEAIKSAPETT 121

Query: 293 TKI-EFEDVRKALIERGLIDKDTLDSHLNFEIKIQNKFKDAPR 168
            K+ +F ++++ + + G   K T++  L   I ++ +  +APR
Sbjct: 122 EKMKKFRNLQRIITKYGRRTKKTIEELLFSPIHLEQQPDEAPR 164


>Z67884-4|CAH60753.1|  905|Caenorhabditis elegans Hypothetical
           protein T14G8.3b protein.
          Length = 905

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 41/149 (27%), Positives = 61/149 (40%), Gaps = 9/149 (6%)
 Frame = -2

Query: 725 FEKVQKKQINMTKFPKYCVVLIMAACYKENTPKSLEYATKLWSDMASTGTLPLRRA---- 558
           F++V+K  +   K  KY V  ++A         +  YA +   D+  T  + L +A    
Sbjct: 104 FDEVRKTVVFPYKEEKYNVETLLAMILWNAKKVTEAYADQTVKDVVITVPIFLNQAERRA 163

Query: 557 ---ATSFAGLALKQ--GAPHIALESISGQRQHYITIRNIKAMALADMGRVDDAIPILRSV 393
              A   AGL L Q       A  +    R+  IT +    M + DMG V     I++ V
Sbjct: 164 IASAAEIAGLNLLQLLNDGSAAALNYGVFRRKEITEKPTH-MLIYDMGAVKTTATIVQYV 222

Query: 392 LNIDSPDQKDKHTFFEETISKVGEAVEKT 306
           L     D KDK    + T+  VG   +KT
Sbjct: 223 LESTRKDGKDK----QPTLRTVGVGFDKT 247


>Z67884-3|CAA91809.2|  921|Caenorhabditis elegans Hypothetical
           protein T14G8.3a protein.
          Length = 921

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 41/149 (27%), Positives = 61/149 (40%), Gaps = 9/149 (6%)
 Frame = -2

Query: 725 FEKVQKKQINMTKFPKYCVVLIMAACYKENTPKSLEYATKLWSDMASTGTLPLRRA---- 558
           F++V+K  +   K  KY V  ++A         +  YA +   D+  T  + L +A    
Sbjct: 120 FDEVRKTVVFPYKEEKYNVETLLAMILWNAKKVTEAYADQTVKDVVITVPIFLNQAERRA 179

Query: 557 ---ATSFAGLALKQ--GAPHIALESISGQRQHYITIRNIKAMALADMGRVDDAIPILRSV 393
              A   AGL L Q       A  +    R+  IT +    M + DMG V     I++ V
Sbjct: 180 IASAAEIAGLNLLQLLNDGSAAALNYGVFRRKEITEKPTH-MLIYDMGAVKTTATIVQYV 238

Query: 392 LNIDSPDQKDKHTFFEETISKVGEAVEKT 306
           L     D KDK    + T+  VG   +KT
Sbjct: 239 LESTRKDGKDK----QPTLRTVGVGFDKT 263


>U29378-4|AAA68727.2|  667|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 197 protein.
          Length = 667

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 21/82 (25%), Positives = 41/82 (50%), Gaps = 3/82 (3%)
 Frame = -2

Query: 422 DDAIPILRSVLNIDSPDQKDKHTFFEETISKVGEAVEKTNNKDTKIEFEDVRKALIERGL 243
           +D+I  L + ++     QK+KH F       +   ++   +K TKI +  V +  +E+  
Sbjct: 484 EDSIEQLLTRMSAMQQTQKNKHVFLINNYDLILSIIDNEESKHTKI-YAIVHE--LEQKS 540

Query: 242 ID---KDTLDSHLNFEIKIQNK 186
           ID   ++ L+ H+ + IK  N+
Sbjct: 541 IDDFVEEMLEPHIGYMIKFVNE 562


>U53155-8|AAC48263.1|  284|Caenorhabditis elegans Hypothetical
           protein ZC513.1 protein.
          Length = 284

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 18/48 (37%), Positives = 24/48 (50%), Gaps = 2/48 (4%)
 Frame = +2

Query: 614 HILNFLVYSLY--NKLPLSTPHSI*ETLSYLFVSFVLSQRPCTSHQTF 751
           H+LN ++Y  Y  N+L L    S    L     SFV +Q P   HQT+
Sbjct: 62  HLLNSMLYQAYQDNRLALKIDES---NLPNEMKSFVSTQCPTKKHQTY 106


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,384,580
Number of Sequences: 27780
Number of extensions: 449722
Number of successful extensions: 1390
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1327
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1388
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2202903780
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)