Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte16f07
         (876 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB073998-1|BAC76402.1|  339|Apis mellifera preprotachykinin prot...    23   3.7  
AB073996-1|BAC76400.1|  215|Apis mellifera preprotachykinin prot...    23   3.7  
AB073995-1|BAC76399.1|  301|Apis mellifera preprotachykinin prot...    23   3.7  
AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein...    23   4.9  
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    22   6.5  
DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GP...    22   8.5  
DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    22   8.5  
AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase ...    22   8.5  
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    22   8.5  

>AB073998-1|BAC76402.1|  339|Apis mellifera preprotachykinin
           protein.
          Length = 339

 Score = 23.0 bits (47), Expect = 3.7
 Identities = 9/24 (37%), Positives = 16/24 (66%)
 Frame = -3

Query: 346 KKLYPKLVKQLKKRTTRIPRSNSR 275
           KK   +++ ++KK+TTR   S S+
Sbjct: 120 KKSLEEILDEIKKKTTRFQDSRSK 143


>AB073996-1|BAC76400.1|  215|Apis mellifera preprotachykinin
           protein.
          Length = 215

 Score = 23.0 bits (47), Expect = 3.7
 Identities = 9/24 (37%), Positives = 16/24 (66%)
 Frame = -3

Query: 346 KKLYPKLVKQLKKRTTRIPRSNSR 275
           KK   +++ ++KK+TTR   S S+
Sbjct: 120 KKSLEEILDEIKKKTTRFQDSRSK 143


>AB073995-1|BAC76399.1|  301|Apis mellifera preprotachykinin
           protein.
          Length = 301

 Score = 23.0 bits (47), Expect = 3.7
 Identities = 9/24 (37%), Positives = 16/24 (66%)
 Frame = -3

Query: 346 KKLYPKLVKQLKKRTTRIPRSNSR 275
           KK   +++ ++KK+TTR   S S+
Sbjct: 120 KKSLEEILDEIKKKTTRFQDSRSK 143


>AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein
           protein.
          Length = 411

 Score = 22.6 bits (46), Expect = 4.9
 Identities = 9/34 (26%), Positives = 18/34 (52%)
 Frame = +1

Query: 46  DDSFYTVHSHIFIY**FSNYCKSFLIFRWPNGMF 147
           +DS+   H+  +    + NY  +   F+W +G+F
Sbjct: 207 NDSWRITHNFFYFDPRYGNYNINGFNFQWKDGLF 240


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 22.2 bits (45), Expect = 6.5
 Identities = 13/57 (22%), Positives = 19/57 (33%)
 Frame = -2

Query: 410 PILRSVLNIDSPDQKDKHTFFEETISKVGEAVEKTNNKDTKIEFEDVRKALIERGLI 240
           P+L S     SP    K T     ++         + K  +      RKA    G+I
Sbjct: 321 PVLSSSTTTTSPMTSTKSTIVRNHLNSTCSVTNSPHQKKLRFHLAKERKASTTLGII 377


>DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GPCR
           protein.
          Length = 381

 Score = 21.8 bits (44), Expect = 8.5
 Identities = 11/39 (28%), Positives = 20/39 (51%)
 Frame = +2

Query: 578 FPLKPYLTIVLLHILNFLVYSLYNKLPLSTPHSI*ETLS 694
           FPL    TI+   I   ++  +Y ++ L   +S  +TL+
Sbjct: 210 FPLYELSTIIFFLIPMLIILVVYTRMGLKIRNSTKDTLN 248


>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 21.8 bits (44), Expect = 8.5
 Identities = 10/33 (30%), Positives = 19/33 (57%)
 Frame = +2

Query: 668 PHSI*ETLSYLFVSFVLSQRPCTSHQTFHDNTV 766
           P ++ +   YLF  +  + RP +SHQ  ++ T+
Sbjct: 41  PTTLLKLKRYLFCEYDPNVRPISSHQIANNVTM 73


>AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase
           protein.
          Length = 492

 Score = 21.8 bits (44), Expect = 8.5
 Identities = 12/34 (35%), Positives = 16/34 (47%)
 Frame = -2

Query: 869 FPFLDAPKEALQCFEEPANDGFFDQQVSYQILLD 768
           F FL   K      E P N G +DQ ++ + L D
Sbjct: 202 FGFLYLNKHFTNSEEAPGNMGLWDQALALRWLRD 235


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 21.8 bits (44), Expect = 8.5
 Identities = 12/34 (35%), Positives = 16/34 (47%)
 Frame = -2

Query: 869 FPFLDAPKEALQCFEEPANDGFFDQQVSYQILLD 768
           F FL   K      E P N G +DQ ++ + L D
Sbjct: 202 FGFLYLNKHFTNSEEAPGNMGLWDQALALRWLRD 235


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 244,050
Number of Sequences: 438
Number of extensions: 5609
Number of successful extensions: 14
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28402218
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)