Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte16f06
         (824 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC3E7.10 |fma1||methionine aminopeptidase Fma1 |Schizosaccharo...   289   3e-79
SPAC2C4.05 |||cornichon family protein|Schizosaccharomyces pombe...    29   1.1  
SPCC553.09c |spb70|pol12|DNA polymerase alpha B-subunit|Schizosa...    27   4.3  
SPCC663.03 |pmd1||leptomycin efflux transporter Pmd1|Schizosacch...    27   4.3  
SPAC328.05 |||RNA-binding protein involved in export of mRNAs|Sc...    26   5.6  
SPBPJ4664.04 |||coatomer alpha subunit |Schizosaccharomyces pomb...    26   7.5  
SPAC19A8.03 |||phosphatidylinositol-3-phosphatase |Schizosacchar...    26   7.5  

>SPBC3E7.10 |fma1||methionine aminopeptidase Fma1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 379

 Score =  289 bits (709), Expect = 3e-79
 Identities = 130/226 (57%), Positives = 165/226 (73%), Gaps = 6/226 (2%)
 Frame = -1

Query: 791 GVSTDEIDRVVHEACIERECYPSPLNYYNFPNSCCTSINEVICHGIPDLRPLQDGDICNV 612
           G +TDE+D +VH ACIER+C+PS LNYY FP S CTS+NE+ICHGIPD RPL+DGDI N+
Sbjct: 149 GTTTDELDSIVHNACIERDCFPSTLNYYAFPKSVCTSVNEIICHGIPDQRPLEDGDIVNI 208

Query: 611 DVTVYHRGFHGDLNETFFVGNVPETTRK---LVQVTHECLQKAIDIVRPGEKYREIGNVI 441
           DV++YH GFHGDLNET++VG+  +       LV+ T   L KAI  V+PG  ++E GN+I
Sbjct: 209 DVSLYHNGFHGDLNETYYVGDKAKANPDLVCLVENTRIALDKAIAAVKPGVLFQEFGNII 268

Query: 440 QKHAQA---NGYSVVRSYCGHGIHRLFHTAPNVPHYAKNKAIGIMKVGHCFTIEPMINEG 270
           +KH  +      SVVR+YCGHGI++LFH +P++PHY+ NKA GI + G  FTIEPM+  G
Sbjct: 269 EKHTNSITEKQISVVRTYCGHGINQLFHCSPSIPHYSHNKAPGIARPGMTFTIEPMLTLG 328

Query: 269 GWRDEQWPDHWTAVTADGSRSAQFEQTLLVTESGCDILTKRNTGRP 132
             RD  WPD WT+ TA G  SAQFE TLLVTE+GC++LT R    P
Sbjct: 329 PARDITWPDDWTSSTASGRCSAQFEHTLLVTETGCEVLTARLPNSP 374


>SPAC2C4.05 |||cornichon family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 134

 Score = 28.7 bits (61), Expect = 1.1
 Identities = 8/34 (23%), Positives = 21/34 (61%)
 Frame = +3

Query: 705 IIIIQGTWVTFPFNASLVDYTVNLICANSYITXS 806
           ++++ G W+TF  N  ++ +   +I +N+++  S
Sbjct: 62  LLLLSGAWITFLLNVPMLAWNAKMIMSNTHMHDS 95


>SPCC553.09c |spb70|pol12|DNA polymerase alpha
           B-subunit|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 574

 Score = 26.6 bits (56), Expect = 4.3
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = -1

Query: 722 PLNYYNFPNSCCTSINEVI 666
           P N+  FPN C  SIN+V+
Sbjct: 414 PSNFKCFPNPCMFSINDVV 432


>SPCC663.03 |pmd1||leptomycin efflux transporter
           Pmd1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1362

 Score = 26.6 bits (56), Expect = 4.3
 Identities = 13/61 (21%), Positives = 28/61 (45%)
 Frame = +3

Query: 267 ASFIDHWFYCETMSYFHNTNSFVFSIMWYIWSCMKQSMYAMTTIRSYYTISICLSMFLYY 446
           A F++ +    +  + H  N  VF++ W I + ++   YA++     Y +   L    Y+
Sbjct: 817 ARFLNIFTDLSSTDFLHKVN--VFAVYWLILAIVQFFAYAISNFAMTYAMEAVLQRIRYH 874

Query: 447 I 449
           +
Sbjct: 875 L 875


>SPAC328.05 |||RNA-binding protein involved in export of
           mRNAs|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 434

 Score = 26.2 bits (55), Expect = 5.6
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = -1

Query: 614 VDVTVYHRGFHGDLNETFFVGNVPETT 534
           ++  VYH   HG  ++  +VGN+P  T
Sbjct: 265 IEDLVYHAYPHGPCSDCIYVGNLPWAT 291


>SPBPJ4664.04 |||coatomer alpha subunit |Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1207

 Score = 25.8 bits (54), Expect = 7.5
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = -1

Query: 632  DGDICNVDVTVYHRGFHGDLNETFFVGNV 546
            D D+C+V   VYH+G+  ++     VG +
Sbjct: 1168 DFDVCSVCGAVYHKGYVNEVCTVCDVGGI 1196


>SPAC19A8.03 |||phosphatidylinositol-3-phosphatase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 559

 Score = 25.8 bits (54), Expect = 7.5
 Identities = 13/40 (32%), Positives = 17/40 (42%)
 Frame = +2

Query: 524 LIYE*SLVHSQQKRFHLDHHGNLYGKLLHQHCICPHPVMD 643
           L Y  S V S    F +DH   +   + HQ   C   +MD
Sbjct: 417 LQYTFSTVRSALSGFSIDHSEKMMSPVFHQFLDCVWQIMD 456


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,544,439
Number of Sequences: 5004
Number of extensions: 80124
Number of successful extensions: 236
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 221
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 234
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 404442380
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)