Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte16f06
(824 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_0835 - 32099966-32100111,32100418-32100465,32100673-321007... 256 2e-68
04_04_1111 - 30979334-30979479,30979769-30979866,30980364-309804... 216 2e-56
10_08_0584 + 18971761-18971834,18971852-18973133,18973197-189745... 211 4e-55
07_03_0551 + 19374405-19374541,19375201-19375435,19375539-193757... 194 7e-50
07_03_0151 - 14465479-14465675,14466280-14466401,14466934-144670... 172 2e-43
07_01_0339 - 2443123-2443508,2443590-2443651,2443692-2443704,244... 85 6e-17
05_03_0633 + 16416913-16417009,16417976-16418060,16418398-164185... 30 1.9
03_02_0027 + 5100865-5100878,5102241-5102708,5102795-5103021,510... 29 3.4
05_04_0235 + 19291204-19291769,19291860-19292250 28 7.8
03_01_0058 - 478708-478731,478802-478834,478953-479100,479423-48... 28 7.8
>02_05_0835 -
32099966-32100111,32100418-32100465,32100673-32100770,
32101269-32101348,32101615-32101686,32102260-32102301,
32102382-32102543,32102971-32103199,32103681-32103747,
32103907-32104003
Length = 346
Score = 256 bits (626), Expect = 2e-68
Identities = 116/214 (54%), Positives = 144/214 (67%)
Frame = -1
Query: 791 GVSTDEIDRVVHEACIERECYPSPLNYYNFPNSCCTSINEVICHGIPDLRPLQDGDICNV 612
G++TDEID+ VH+ ++ YPSPL Y FP S CTS+NE ICHGIPD RPL+DGDI N+
Sbjct: 133 GITTDEIDKAVHQMIVDNGAYPSPLGYCGFPKSVCTSVNECICHGIPDSRPLEDGDIINI 192
Query: 611 DVTVYHRGFHGDLNETFFVGNVPETTRKLVQVTHECLQKAIDIVRPGEKYREIGNVIQKH 432
DVTVY G+HGD + TF GNV + +KLVQVT ECL KAI I PG + + IG IQ H
Sbjct: 193 DVTVYLNGYHGDTSATFLCGNVDDKAKKLVQVTRECLDKAISICAPGVEIKRIGRTIQDH 252
Query: 431 AQANGYSVVRSYCGHGIHRLFHTAPNVPHYAKNKAIGIMKVGHCFTIEPMINEGGWRDEQ 252
A + VVR + GHG+ ++FH P V H+ +N G M + FTIEPM+ G
Sbjct: 253 ADKFKFGVVRQFVGHGVGQVFHAEPVVLHF-RNNEWGRMTLNQTFTIEPMLTVGSVNPVI 311
Query: 251 WPDHWTAVTADGSRSAQFEQTLLVTESGCDILTK 150
W D WTAVT DGS SAQFE T+L+TE G +ILT+
Sbjct: 312 WSDDWTAVTEDGSLSAQFEHTILITEDGAEILTQ 345
>04_04_1111 -
30979334-30979479,30979769-30979866,30980364-30980443,
30980685-30980756,30980860-30980901,30981009-30981170,
30981276-30981427,30981453-30981538,30981654-30981726,
30982706-30982889
Length = 364
Score = 216 bits (528), Expect = 2e-56
Identities = 101/213 (47%), Positives = 138/213 (64%)
Frame = -1
Query: 788 VSTDEIDRVVHEACIERECYPSPLNYYNFPNSCCTSINEVICHGIPDLRPLQDGDICNVD 609
V+TDEID+ VH+ I+ YPSPL Y FP S CTS+NE ICHGIPD R LQDGDI N+D
Sbjct: 168 VTTDEIDKAVHKMIIDAGAYPSPLGYGGFPKSVCTSVNECICHGIPDSRELQDGDIINID 227
Query: 608 VTVYHRGFHGDLNETFFVGNVPETTRKLVQVTHECLQKAIDIVRPGEKYREIGNVIQKHA 429
VTVY G+HGD ++TF G V E +++LV+VT EC+ +AI + G ++IG I +HA
Sbjct: 228 VTVYLNGYHGDTSKTFLCGEVDEASKRLVKVTEECMLRAISACKHGTSLKKIGRRISEHA 287
Query: 428 QANGYSVVRSYCGHGIHRLFHTAPNVPHYAKNKAIGIMKVGHCFTIEPMINEGGWRDEQW 249
+ +G+ VV + GHG+ R+FH+ P + H +P ++ G + W
Sbjct: 288 ERHGFGVVDRFVGHGVGRIFHSEPMIYHQ-----------------QPALSMGSIDCDMW 330
Query: 248 PDHWTAVTADGSRSAQFEQTLLVTESGCDILTK 150
D WTAVT DGS +AQFE T+L+T++G +ILTK
Sbjct: 331 DDGWTAVTTDGSLAAQFEHTILITKTGAEILTK 363
>10_08_0584 + 18971761-18971834,18971852-18973133,18973197-18974509,
18993885-18993935,18994674-18994829,18995048-18995123,
18995317-18995364,18995445-18995489,18995580-18995679,
18995923-18995968,18996115-18996176,18996257-18996355,
18996536-18996609,18996721-18996790,18997074-18997162,
18997327-18997404
Length = 1220
Score = 211 bits (516), Expect = 4e-55
Identities = 112/220 (50%), Positives = 141/220 (64%)
Frame = -1
Query: 791 GVSTDEIDRVVHEACIERECYPSPLNYYNFPNSCCTSINEVICHGIPDLRPLQDGDICNV 612
G++TDEIDRVVHE + R L Y+ T ++ V R L+DGDI NV
Sbjct: 1031 GITTDEIDRVVHEETVARG-----LKEYDM----LTLLSLVS-------RKLEDGDIVNV 1074
Query: 611 DVTVYHRGFHGDLNETFFVGNVPETTRKLVQVTHECLQKAIDIVRPGEKYREIGNVIQKH 432
DVTVY++G HGDLNET+FVGNV E +++LV+ T+ECL KAI IV+PG ++RE+G +I +H
Sbjct: 1075 DVTVYYKGVHGDLNETYFVGNVDEASKQLVRCTYECLDKAIAIVKPGVRFREVGEIINRH 1134
Query: 431 AQANGYSVVRSYCGHGIHRLFHTAPNVPHYAKNKAIGIMKVGHCFTIEPMINEGGWRDEQ 252
A +G SVV+SYCGHGI LFH APN+PHY++ W D
Sbjct: 1135 ASMSGLSVVKSYCGHGIGELFHCAPNIPHYSR----------------------VWHDRL 1172
Query: 251 WPDHWTAVTADGSRSAQFEQTLLVTESGCDILTKRNTGRP 132
WPD WTAVTADG RSAQFE TLLVTE+G ++LT R P
Sbjct: 1173 WPDEWTAVTADGKRSAQFEHTLLVTETGVEVLTARLPSSP 1212
>07_03_0551 +
19374405-19374541,19375201-19375435,19375539-19375700,
19375778-19375819,19375941-19376012,19376291-19376370,
19376962-19377059,19377691-19377738,19377983-19378083,
19378331-19378426,19378599-19378689,19379510-19379706,
19380918-19381004,19381208-19381488,19381653-19381743
Length = 605
Score = 194 bits (473), Expect = 7e-50
Identities = 93/201 (46%), Positives = 122/201 (60%)
Frame = -1
Query: 788 VSTDEIDRVVHEACIERECYPSPLNYYNFPNSCCTSINEVICHGIPDLRPLQDGDICNVD 609
V+T+EIDR VH IE YPS L Y FP S CTS+NE +CHG+PD LQ GDI NVD
Sbjct: 127 VTTNEIDREVHNMIIEAGAYPSQLGYGGFPKSICTSLNECVCHGVPDSTQLQTGDIMNVD 186
Query: 608 VTVYHRGFHGDLNETFFVGNVPETTRKLVQVTHECLQKAIDIVRPGEKYREIGNVIQKHA 429
V V+ G+HG + TF G V ++ R ++ ECL+K I + R G Y++IG I K A
Sbjct: 187 VNVFLNGYHGGASRTFVCGEVDDSIRHFLKAAEECLEKGITVCRDGVNYKKIGKKISKLA 246
Query: 428 QANGYSVVRSYCGHGIHRLFHTAPNVPHYAKNKAIGIMKVGHCFTIEPMINEGGWRDEQW 249
GY VV + GHGI ++H+ P + H+A + + G M G FTIEP++ W
Sbjct: 247 YFYGYYVVDRFVGHGIGPIWHSEPLILHHANDNS-GRMVEGQTFTIEPILTMEKAETVTW 305
Query: 248 PDHWTAVTADGSRSAQFEQTL 186
D WT VTADGS +AQF+ T+
Sbjct: 306 EDGWTTVTADGSWAAQFKHTV 326
>07_03_0151 - 14465479-14465675,14466280-14466401,14466934-14467081,
14467146-14467167,14467299-14467393,14467395-14467438,
14467750-14467841,14467911-14467982,14468188-14468229,
14468333-14468494,14468631-14468683,14468808-14468925,
14468974-14469150,14469573-14469639,14470195-14470273,
14473805-14473862,14474257-14474346,14474429-14474540,
14474649-14474912,14475361-14475463,14476200-14476278,
14476748-14476852
Length = 766
Score = 172 bits (419), Expect = 2e-43
Identities = 91/220 (41%), Positives = 128/220 (58%), Gaps = 9/220 (4%)
Frame = -1
Query: 785 STDEIDRVVHEACIERECYPSPLNYYNFPNSCCTSINEVICHGIPDLRPLQDGDICNVDV 606
+TDEIDR VH+ I+ YPSPL Y FP S CTS+NE ICHGIPD R LQ+GDI N+DV
Sbjct: 439 TTDEIDRAVHQMIIDAGAYPSPLGYGGFPKSVCTSVNECICHGIPDSRVLQNGDIINIDV 498
Query: 605 TVYHRGFHGDLNETFFVGNVPETTRKLVQVTHEC----LQKAIDIVRPGEKYREIG-NVI 441
TVY G+HGD + T+ G V E+T +LV+ C + + I + G ++ IG +
Sbjct: 499 TVYLNGYHGDTSRTYLCGEVDESTMQLVKKLIYCSVTNMLRGISACKHGASFKTIGQRIS 558
Query: 440 QKHAQANGYSV---VRSYCGHGIHRLFHTAPNVPHYA-KNKAIGIMKVGHCFTIEPMINE 273
A N + + + ++ G + + + Y+ +N++ GI H +EP ++
Sbjct: 559 DSPASTNNFMISDFMSTWTSTGTASIPLSDMELGKYSTRNRSFGI-PARHSQLVEPTLSM 617
Query: 272 GGWRDEQWPDHWTAVTADGSRSAQFEQTLLVTESGCDILT 153
GG + W D WTAVT D S +AQFE T+LVT G +ILT
Sbjct: 618 GGTQCTLWDDGWTAVTVDSSLTAQFEHTILVTGDGAEILT 657
>07_01_0339 -
2443123-2443508,2443590-2443651,2443692-2443704,
2444483-2444495
Length = 157
Score = 85.0 bits (201), Expect = 6e-17
Identities = 37/54 (68%), Positives = 46/54 (85%)
Frame = -1
Query: 644 RPLQDGDICNVDVTVYHRGFHGDLNETFFVGNVPETTRKLVQVTHECLQKAIDI 483
R L+DGDI NVDVTVY++G HGDLNET+FVGNV E +++LV+ T+ECL KAI I
Sbjct: 9 RKLEDGDIVNVDVTVYYKGVHGDLNETYFVGNVDEASKQLVRCTYECLDKAIAI 62
>05_03_0633 +
16416913-16417009,16417976-16418060,16418398-16418551,
16418808-16419023,16419105-16419241,16419317-16419408,
16419622-16419804,16421722-16421819,16422021-16422070,
16424605-16424756,16424944-16425069,16426315-16426523
Length = 532
Score = 30.3 bits (65), Expect = 1.9
Identities = 15/56 (26%), Positives = 26/56 (46%)
Frame = -1
Query: 554 GNVPETTRKLVQVTHECLQKAIDIVRPGEKYREIGNVIQKHAQANGYSVVRSYCGH 387
G V ++ + + A+ +VRPG+K +++ IQK A A +V H
Sbjct: 83 GAVTGKAADVLAAANTAAEVALRLVRPGKKNKDVTEAIQKVAAAYDCKIVEGVLSH 138
>03_02_0027 +
5100865-5100878,5102241-5102708,5102795-5103021,
5103670-5104577
Length = 538
Score = 29.5 bits (63), Expect = 3.4
Identities = 13/41 (31%), Positives = 22/41 (53%)
Frame = -3
Query: 465 VQGDWQCNTETCSSKWI*CSKILLWSWHT*IVSYSSKCTTL 343
VQ DW+ +T+TC S+ C L+S +++ + C L
Sbjct: 135 VQSDWKAHTKTCGSREYRCDCGTLFSRRDSFITHRAFCDAL 175
>05_04_0235 + 19291204-19291769,19291860-19292250
Length = 318
Score = 28.3 bits (60), Expect = 7.8
Identities = 17/59 (28%), Positives = 24/59 (40%)
Frame = -3
Query: 555 WECTRDYS*ISSGHP*MLTESHRYSPSW*KVQGDWQCNTETCSSKWI*CSKILLWSWHT 379
W C D G P L+ ++ Y P+ + D N E +S + K LW W T
Sbjct: 171 WPCAPDKKYFGRG-PIQLSYNYNYGPAGEAIGEDLLNNPELVASDPVVSFKTALWFWMT 228
>03_01_0058 -
478708-478731,478802-478834,478953-479100,479423-480072
Length = 284
Score = 28.3 bits (60), Expect = 7.8
Identities = 12/23 (52%), Positives = 14/23 (60%)
Frame = -1
Query: 431 AQANGYSVVRSYCGHGIHRLFHT 363
AQ Y +V Y G+ IHRL HT
Sbjct: 127 AQVAVYLLVEDYLGYWIHRLLHT 149
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,499,437
Number of Sequences: 37544
Number of extensions: 503462
Number of successful extensions: 1234
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1173
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1230
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2268190812
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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