Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte16f06
(824 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC024757-4|AAK68429.2| 371|Caenorhabditis elegans Methionine am... 405 e-113
AC006696-3|AAF39984.1| 391|Caenorhabditis elegans Hypothetical ... 38 0.007
Z82086-3|CAB04997.1| 325|Caenorhabditis elegans Hypothetical pr... 33 0.19
Z74030-13|CAA98445.2| 336|Caenorhabditis elegans Hypothetical p... 32 0.57
AL117207-3|CAB60391.1| 331|Caenorhabditis elegans Hypothetical ... 32 0.57
AL117205-8|CAB55167.1| 444|Caenorhabditis elegans Hypothetical ... 32 0.57
Z81479-11|CAB03937.2| 1441|Caenorhabditis elegans Hypothetical p... 31 1.0
Z73423-8|CAO82012.1| 1441|Caenorhabditis elegans Hypothetical pr... 31 1.0
AL031632-3|CAA21006.1| 283|Caenorhabditis elegans Hypothetical ... 31 1.3
AF003385-6|AAB54246.1| 354|Caenorhabditis elegans Hypothetical ... 30 1.7
U39996-6|AAA81092.1| 595|Caenorhabditis elegans Hypothetical pr... 29 3.1
Z75549-2|CAA99916.1| 313|Caenorhabditis elegans Hypothetical pr... 28 7.1
U23139-7|AAK31492.1| 929|Caenorhabditis elegans Hypothetical pr... 28 9.3
AF101318-8|AAC69343.2| 342|Caenorhabditis elegans Hypothetical ... 28 9.3
>AC024757-4|AAK68429.2| 371|Caenorhabditis elegans Methionine
aminopeptidase protein 1 protein.
Length = 371
Score = 405 bits (997), Expect = e-113
Identities = 176/232 (75%), Positives = 204/232 (87%), Gaps = 1/232 (0%)
Frame = -1
Query: 800 CDVGVSTDEIDRVVHEACIERECYPSPLNYYNFPNSCCTSINEVICHGIPDLRPLQDGDI 621
C GV+T+EIDRVVHEA IER+CYPSPL YY FP SCCTS+NEVICHGIPD+R L++GD+
Sbjct: 138 CGPGVTTEEIDRVVHEAAIERDCYPSPLGYYKFPKSCCTSVNEVICHGIPDMRKLENGDL 197
Query: 620 CNVDVTVYHRGFHGDLNETFFVGN-VPETTRKLVQVTHECLQKAIDIVRPGEKYREIGNV 444
CNVDVTVYHRGFHGDLNETF VG+ V E +RKLV+VT ECLQ+AI IV+PG K+REIGNV
Sbjct: 198 CNVDVTVYHRGFHGDLNETFLVGDKVDEESRKLVKVTFECLQQAIAIVKPGVKFREIGNV 257
Query: 443 IQKHAQANGYSVVRSYCGHGIHRLFHTAPNVPHYAKNKAIGIMKVGHCFTIEPMINEGGW 264
IQKHA ANG+SVV+ YCGHGIHRLFHTAPNVPHYAKN A G+MK G+ FTIEPMIN G +
Sbjct: 258 IQKHANANGFSVVKGYCGHGIHRLFHTAPNVPHYAKNNATGVMKAGNSFTIEPMINAGTY 317
Query: 263 RDEQWPDHWTAVTADGSRSAQFEQTLLVTESGCDILTKRNTGRPWFLDQLEK 108
D++WPD WTAVT DG RSAQFEQTLLVT++GC+ILTKR+ RPWF+DQ+E+
Sbjct: 318 HDDKWPDDWTAVTRDGRRSAQFEQTLLVTDTGCEILTKRDGNRPWFMDQIEQ 369
>AC006696-3|AAF39984.1| 391|Caenorhabditis elegans Hypothetical
protein W08E12.7 protein.
Length = 391
Score = 38.3 bits (85), Expect = 0.007
Identities = 33/114 (28%), Positives = 49/114 (42%), Gaps = 9/114 (7%)
Frame = -1
Query: 689 CTSINEVICHGIP--DLRP--LQDGDICNVDVTVYHRGFHGDLNETFFVGNVPET--TRK 528
C SI+ ICH P P L++G + VD+ + G T VG + T K
Sbjct: 90 CISIDNCICHYTPLKSEAPVVLKNGQVVKVDLGTHIDGLIATAAHTVVVGASKDNKVTGK 149
Query: 527 LVQV---THECLQKAIDIVRPGEKYREIGNVIQKHAQANGYSVVRSYCGHGIHR 375
L + TH+ L+ AI +RP + I I K A G + + + H + R
Sbjct: 150 LADLLRGTHDALEIAIRSLRPDTENTTITKNIDKTAAEFGLTPIENMLSHQLER 203
>Z82086-3|CAB04997.1| 325|Caenorhabditis elegans Hypothetical
protein ZK228.6 protein.
Length = 325
Score = 33.5 bits (73), Expect = 0.19
Identities = 13/48 (27%), Positives = 29/48 (60%), Gaps = 1/48 (2%)
Frame = +3
Query: 330 FVFSIMWYIWSCMKQSMYAMTTIRSYYTISICLSMFL-YYIANLPVLF 470
FVF I WY++ + QS A ++ + +++C+ +F+ + + PV++
Sbjct: 212 FVFQISWYLYHTVSQSQ-ATNRLQKQFFVALCIQVFIPFALLCFPVIY 258
>Z74030-13|CAA98445.2| 336|Caenorhabditis elegans Hypothetical
protein D1054.12 protein.
Length = 336
Score = 31.9 bits (69), Expect = 0.57
Identities = 12/48 (25%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
Frame = +3
Query: 330 FVFSIMWYIWSCMKQSMYAMTTIRSYYTISICLSMFL-YYIANLPVLF 470
FV SI WY++ + +S ++ + ++C+ +F+ ++ + PVL+
Sbjct: 214 FVLSIFWYLYHTVSKSQ-VTNRLQKQFFFALCIQVFIPIFVLSFPVLY 260
>AL117207-3|CAB60391.1| 331|Caenorhabditis elegans Hypothetical
protein Y60A3A.3 protein.
Length = 331
Score = 31.9 bits (69), Expect = 0.57
Identities = 14/57 (24%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
Frame = +3
Query: 330 FVFSIMWYIWSCMKQSMYAMTTIRSYYTISICLSMFL-YYIANLPVLFTRTDYIYGF 497
FV SI W+++ QS A + ++ + ++CL +F+ ++ PV++ + G+
Sbjct: 213 FVISISWHLFRTTSQSA-ATSRLQKQFFFAMCLQVFIPIFVLAFPVIYIIMSIVLGY 268
>AL117205-8|CAB55167.1| 444|Caenorhabditis elegans Hypothetical
protein Y116A8A.9 protein.
Length = 444
Score = 31.9 bits (69), Expect = 0.57
Identities = 33/132 (25%), Positives = 53/132 (40%), Gaps = 13/132 (9%)
Frame = -1
Query: 704 FPNSCCTSINEVICHGIP---DLRPLQDGDICNVDVTVYHRGFHGDLNETFFVGNVPETT 534
FP C S+N H P D LQ GD+C +D ++ R G L ++ F +
Sbjct: 183 FPTGC--SLNHCAAHYTPNAGDTTVLQYGDVCKIDYGIHVR---GRLIDSAFTVHFDPKF 237
Query: 533 RKLVQVTHECLQKAIDIVRPGEKYREIGNVIQK-----HAQANGYSVV----RSYCGHGI 381
LV+ E I + ++G ++++ + +G S V R+ GH I
Sbjct: 238 DPLVEAVREATNAGIKESGIDVRLCDVGEIVEEVMTSHEVELDGKSYVVKPIRNLNGHSI 297
Query: 380 HRL-FHTAPNVP 348
+ H VP
Sbjct: 298 AQYRIHAGKTVP 309
>Z81479-11|CAB03937.2| 1441|Caenorhabditis elegans Hypothetical
protein C34F6.10 protein.
Length = 1441
Score = 31.1 bits (67), Expect = 1.0
Identities = 16/39 (41%), Positives = 23/39 (58%)
Frame = -1
Query: 578 DLNETFFVGNVPETTRKLVQVTHECLQKAIDIVRPGEKY 462
DL T + +P T R L++VT + +D V+PGEKY
Sbjct: 1011 DLQYTVHIRQLP-TKRDLLKVTTKAKNIVLDSVQPGEKY 1048
>Z73423-8|CAO82012.1| 1441|Caenorhabditis elegans Hypothetical protein
C34F6.10 protein.
Length = 1441
Score = 31.1 bits (67), Expect = 1.0
Identities = 16/39 (41%), Positives = 23/39 (58%)
Frame = -1
Query: 578 DLNETFFVGNVPETTRKLVQVTHECLQKAIDIVRPGEKY 462
DL T + +P T R L++VT + +D V+PGEKY
Sbjct: 1011 DLQYTVHIRQLP-TKRDLLKVTTKAKNIVLDSVQPGEKY 1048
>AL031632-3|CAA21006.1| 283|Caenorhabditis elegans Hypothetical
protein Y32B12B.3 protein.
Length = 283
Score = 30.7 bits (66), Expect = 1.3
Identities = 18/67 (26%), Positives = 33/67 (49%), Gaps = 1/67 (1%)
Frame = +3
Query: 279 DHWFYCETMSYFHN-TNSFVFSIMWYIWSCMKQSMYAMTTIRSYYTISICLSMFLYYIAN 455
+HWFY + + YF N S + YIW+ K++ + R+ I++ S+ +
Sbjct: 170 EHWFYRDQVMYFSNGFLSILLCFRLYIWNTFKKAASSHALSRA-TRIAVLDSIVILCFHI 228
Query: 456 LPVLFTR 476
+P+L R
Sbjct: 229 IPLLVFR 235
>AF003385-6|AAB54246.1| 354|Caenorhabditis elegans Hypothetical
protein R08F11.4 protein.
Length = 354
Score = 30.3 bits (65), Expect = 1.7
Identities = 16/46 (34%), Positives = 25/46 (54%)
Frame = -1
Query: 455 IGNVIQKHAQANGYSVVRSYCGHGIHRLFHTAPNVPHYAKNKAIGI 318
IGN I++ +A G V+ CG G FH+ HY K++ +G+
Sbjct: 154 IGNGIKEKLEAGGIRVLDVGCGGG----FHSGLLAEHYPKSQFVGL 195
>U39996-6|AAA81092.1| 595|Caenorhabditis elegans Hypothetical
protein C56E6.5 protein.
Length = 595
Score = 29.5 bits (63), Expect = 3.1
Identities = 15/63 (23%), Positives = 32/63 (50%), Gaps = 3/63 (4%)
Frame = +3
Query: 309 YFHNTNSFVFSIMWYIWSCMKQSMY---AMTTIRSYYTISICLSMFLYYIANLPVLFTRT 479
Y T+ +FSI + ++SC++ S++ + + +S I L++FL I + +
Sbjct: 406 YCQTTSLTIFSIFFLVYSCIQSSLFVGIVLWSFKSEAMFQISLNLFLLSIFSFSIFTICA 465
Query: 480 DYI 488
Y+
Sbjct: 466 RYL 468
>Z75549-2|CAA99916.1| 313|Caenorhabditis elegans Hypothetical
protein T19C4.2 protein.
Length = 313
Score = 28.3 bits (60), Expect = 7.1
Identities = 15/45 (33%), Positives = 24/45 (53%)
Frame = +3
Query: 309 YFHNTNSFVFSIMWYIWSCMKQSMYAMTTIRSYYTISICLSMFLY 443
Y N+F +IM+ + M YA+T+I S +SI + FL+
Sbjct: 74 YLMLENNFTLNIMYSLMYNMSYVQYAITSIISINRLSIIWNHFLF 118
>U23139-7|AAK31492.1| 929|Caenorhabditis elegans Hypothetical
protein F13H8.2 protein.
Length = 929
Score = 27.9 bits (59), Expect = 9.3
Identities = 16/57 (28%), Positives = 27/57 (47%), Gaps = 2/57 (3%)
Frame = -1
Query: 338 KNKAIGIMKVGHCFTIEPMINEGG--WRDEQWPDHWTAVTADGSRSAQFEQTLLVTE 174
KN IG+ ++ +E G W + PD+ +TA ++ +F +LVTE
Sbjct: 471 KNGEIGVFELSSAELVETRKAHTGAIWTIQNSPDNEGFITASADKTVRFWSFVLVTE 527
>AF101318-8|AAC69343.2| 342|Caenorhabditis elegans Hypothetical
protein Y73C8C.2 protein.
Length = 342
Score = 27.9 bits (59), Expect = 9.3
Identities = 17/56 (30%), Positives = 23/56 (41%)
Frame = -1
Query: 824 FWMKQLXVCDVGVSTDEIDRVVHEACIERECYPSPLNYYNFPNSCCTSINEVICHG 657
F L + V +S +I R HE I CY +NF + E+ CHG
Sbjct: 5 FLRLSLILAQVHISVSDICRYPHEKFIGSRCYAFVPKRHNFETA------EIYCHG 54
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,630,507
Number of Sequences: 27780
Number of extensions: 453106
Number of successful extensions: 1135
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1103
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1134
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2040452812
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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