Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte16f06
         (824 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    23   3.4  
AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase pr...    22   6.0  
DQ325115-1|ABD14129.1|  185|Apis mellifera complementary sex det...    22   7.9  
AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex det...    22   7.9  

>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 23.0 bits (47), Expect = 3.4
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = -1

Query: 668 ICHGIPDLRPLQDGDICN 615
           ICHG PD + L D  + N
Sbjct: 14  ICHGNPDAKRLYDDLLSN 31


>AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase
           protein.
          Length = 342

 Score = 22.2 bits (45), Expect = 6.0
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = -1

Query: 197 EQTLLVTESGCDILTKRNTGRPWFLDQL 114
           E+ L    + CD+L KRN   P FL +L
Sbjct: 123 EKHLTQRINSCDLLKKRNENDP-FLKRL 149


>DQ325115-1|ABD14129.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 21.8 bits (44), Expect = 7.9
 Identities = 7/11 (63%), Positives = 9/11 (81%)
 Frame = +2

Query: 686 YNNCWGNYNNS 718
           YNN + NYNN+
Sbjct: 94  YNNNYNNYNNN 104


>AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex
           determiner protein.
          Length = 426

 Score = 21.8 bits (44), Expect = 7.9
 Identities = 7/11 (63%), Positives = 9/11 (81%)
 Frame = +2

Query: 686 YNNCWGNYNNS 718
           YNN + NYNN+
Sbjct: 334 YNNNYNNYNNN 344


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 240,725
Number of Sequences: 438
Number of extensions: 5825
Number of successful extensions: 11
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 26338809
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)