Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte16f05
         (876 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC16.04 |dus3||tRNA dihydrouridine synthase Dus3 |Schizosaccha...    28   2.0  
SPBC1718.06 |msp1|mgm1|mitochondrial GTPase Msp1|Schizosaccharom...    27   4.6  
SPAC6B12.02c |mus7||DNA repair protein Mus7|Schizosaccharomyces ...    27   4.6  
SPBC839.10 |usp107|snu71|U1 snRNP-associated protein Usp107|Schi...    26   6.1  
SPAC1952.11c |ure2||urease |Schizosaccharomyces pombe|chr 1|||Ma...    26   6.1  
SPAC1635.01 |||voltage-dependent anion-selective channel|Schizos...    26   6.1  

>SPAC16.04 |dus3||tRNA dihydrouridine synthase Dus3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 617

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 11/23 (47%), Positives = 13/23 (56%)
 Frame = +1

Query: 574 SEYSMCSPLDSGKMPPWILLHSL 642
           SE +MC PL  G  P W L+  L
Sbjct: 268 SEMAMCYPLMQGHQPEWALVRGL 290


>SPBC1718.06 |msp1|mgm1|mitochondrial GTPase
           Msp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 903

 Score = 26.6 bits (56), Expect = 4.6
 Identities = 13/44 (29%), Positives = 23/44 (52%)
 Frame = -3

Query: 823 NQVVGDDALVDDDESVVKSSQDIDTTILFTKPVPSLGDLTFDIQ 692
           + V G+D L  D++  +      D  +LFTK +  + ++  DIQ
Sbjct: 212 DSVDGEDTLTADEKRKLAQESKEDRMMLFTKKMIEIRNILQDIQ 255


>SPAC6B12.02c |mus7||DNA repair protein Mus7|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1888

 Score = 26.6 bits (56), Expect = 4.6
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = -3

Query: 223 VDYDWLPKEIVNQLKKSPKTPKQSP 149
           VD  WLPK  ++ LKKS     ++P
Sbjct: 374 VDQLWLPKRSLSALKKSSSLTSENP 398


>SPBC839.10 |usp107|snu71|U1 snRNP-associated protein
           Usp107|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 695

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = -1

Query: 180 KNLPRRRSSRRAQGKQRDQQATTKKS 103
           KNLPR + S   Q KQ  Q  +++KS
Sbjct: 95  KNLPRNQKSNEIQEKQTFQTPSSEKS 120


>SPAC1952.11c |ure2||urease |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 835

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 20/55 (36%), Positives = 24/55 (43%), Gaps = 2/55 (3%)
 Frame = +2

Query: 236 AGFNGLR-H*TW*STPGQRSESLLSCDEGQHSTSTKEDI*EESLSI-*TFRYFDN 394
           AG +GL+ H  W STP      L  CDE         D   ES  +  TF+ F N
Sbjct: 481 AGCSGLKLHEDWGSTPAAIDSCLSVCDEYDVQCLIHTDTLNESSFVEGTFKAFKN 535


>SPAC1635.01 |||voltage-dependent anion-selective
           channel|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 282

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 13/46 (28%), Positives = 21/46 (45%)
 Frame = +2

Query: 470 SERSSSKGFIRDEGIGKSGFLFWLNFSVIRQRGEVLNIVCVVHWIA 607
           S  +  + F+ D  +G  GFL    F    Q+G V N    + ++A
Sbjct: 126 SVNALERKFLGDFTVGHEGFLAGAEFGYDVQKGNVSNYAATIGYLA 171


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,375,771
Number of Sequences: 5004
Number of extensions: 70426
Number of successful extensions: 190
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 187
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 190
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 438479610
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)