Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte16f05
(876 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_1396 + 29855256-29855328,29856019-29856180,29856466-298565... 58 9e-09
01_06_0533 + 30052538-30054004 33 0.23
05_07_0212 + 28434612-28435931,28436012-28436044,28436557-284366... 30 2.1
03_03_0214 + 15487367-15487388,15488220-15488375,15488690-154889... 30 2.1
10_02_0022 - 4290708-4290788,4291254-4291305,4291396-4291484,429... 30 2.8
02_05_0640 - 30558523-30559027,30559123-30559252,30559388-305598... 30 2.8
05_06_0191 - 26265460-26267016,26267858-26268356,26268789-262688... 29 3.7
11_01_0487 - 3763233-3763733,3763827-3764279,3765270-3765392,376... 29 6.5
05_03_0607 - 16149180-16149617,16149795-16150100 29 6.5
02_05_1042 + 33718988-33720112,33720709-33721305,33721862-337222... 29 6.5
06_03_0099 + 16633928-16638213,16638299-16638386,16638823-166389... 28 8.5
02_04_0195 + 20830849-20830950,20831498-20831690,20831800-208319... 28 8.5
>06_03_1396 +
29855256-29855328,29856019-29856180,29856466-29856516,
29857189-29857277,29857632-29857709,29857811-29858014,
29858101-29858172,29858262-29858306
Length = 257
Score = 58.0 bits (134), Expect = 9e-09
Identities = 43/157 (27%), Positives = 68/157 (43%), Gaps = 1/157 (0%)
Frame = -3
Query: 817 VVGDDALVDDDESVVKSSQDIDTTILFTKPVPSLGDLTFDIQAGYPVEFFVGFINKGSVD 638
+V DD V D + + ++T +F K + + AG E VG N+G
Sbjct: 47 IVSDDTQVSSD-GPLSPAPGVETVCVFPKNAGKI------VLAGEETELLVGLQNEGEST 99
Query: 637 YVVESMEASFRYPMDYTYYIQNFTALP-YNREVKPKQEATFAYSFIPNEAFAGRPFGLNV 461
V ++ ++ P D+ Y QN T +N V +ATF Y+F ++ + L
Sbjct: 100 LNVVAIHSTLHLPFDHKMYGQNLTVQNFFNASVPVSVQATFPYTFAVSKFLQPGAYDLVG 159
Query: 460 QLNYRDASGNAYQEAVYNQTLNIVEVSEGLDGETFFL 350
+ Y + N YQ YN T+ +VE L E+ FL
Sbjct: 160 YIVY-EIDQNPYQNVFYNGTVEVVEAGGLLSVESVFL 195
>01_06_0533 + 30052538-30054004
Length = 488
Score = 33.5 bits (73), Expect = 0.23
Identities = 17/52 (32%), Positives = 27/52 (51%)
Frame = +1
Query: 289 KRELAVLRRGPTLHQHQGRHIRRKSLHLDLQILRQCSVSGCRRLPGKHFRWH 444
K LA++R T+ + + RHI K++ L +LR+ SG L +R H
Sbjct: 36 KLRLALVRVHVTVEEAEARHITNKAMLRQLDVLREAMYSGYHMLDALTYRAH 87
>05_07_0212 +
28434612-28435931,28436012-28436044,28436557-28436670,
28436767-28437102,28437221-28437283,28437364-28437519,
28437650-28437715,28439074-28439310,28439403-28439678,
28440060-28440248,28440459-28440620
Length = 983
Score = 30.3 bits (65), Expect = 2.1
Identities = 15/46 (32%), Positives = 22/46 (47%)
Frame = -1
Query: 621 WRHLSAIQWTTHTIFRTSPRCLITEKLSQNRKPLLPIPSSLMKPLL 484
WR + + T H + R PR + S KP +P P+ + PLL
Sbjct: 174 WRKGNPVS-TVHKVVRDHPRSESRNQSSSTAKPSMPAPTKPVPPLL 218
>03_03_0214 +
15487367-15487388,15488220-15488375,15488690-15488925,
15489013-15489132,15490466-15490480
Length = 182
Score = 30.3 bits (65), Expect = 2.1
Identities = 15/34 (44%), Positives = 21/34 (61%)
Frame = -1
Query: 204 LKKL*INSKNLPRRRSSRRAQGKQRDQQATTKKS 103
LKK ++NL R RS G +R +Q+TTKK+
Sbjct: 104 LKKKEFRTRNLKRNRSWTDKNGTRRKKQSTTKKT 137
>10_02_0022 -
4290708-4290788,4291254-4291305,4291396-4291484,
4291565-4291615,4291699-4291893,4292010-4292090,
4292190-4292252,4292480-4292554,4292630-4292710,
4292784-4292888,4292977-4293057,4293156-4293242,
4293322-4293369,4293923-4293987,4294109-4294172,
4294828-4294896
Length = 428
Score = 29.9 bits (64), Expect = 2.8
Identities = 17/44 (38%), Positives = 24/44 (54%)
Frame = -3
Query: 820 QVVGDDALVDDDESVVKSSQDIDTTILFTKPVPSLGDLTFDIQA 689
Q+VGDD LV + V K+ Q+ L K V +G +T I+A
Sbjct: 326 QIVGDDLLVTNPTRVAKAIQEKSCNALLLK-VNQIGSVTESIEA 368
>02_05_0640 -
30558523-30559027,30559123-30559252,30559388-30559868,
30560292-30560346,30560537-30560613,30561228-30561315,
30561490-30561593,30562050-30562231,30562347-30563109,
30563195-30563438,30564513-30564658,30565158-30565283,
30565404-30565517,30565595-30565762,30566283-30566528,
30566605-30566767,30566970-30567064,30567274-30567357,
30567769-30568055,30568359-30568572,30568923-30569140,
30569386-30569623,30570312-30571118,30571202-30571301,
30571694-30571737,30571824-30571973
Length = 1942
Score = 29.9 bits (64), Expect = 2.8
Identities = 15/66 (22%), Positives = 31/66 (46%)
Frame = +1
Query: 223 LHWLCRFQRVETLNVVIYAWPTKRELAVLRRGPTLHQHQGRHIRRKSLHLDLQILRQCSV 402
+ W+ F + + W T +A L +GP L ++ + R++ L + +L S+
Sbjct: 609 MFWVLSFTMAQPACEAVMNWFTSVGVADLIQGPNLQPNERMTMMRETYPLSMSLLSGLSI 668
Query: 403 SGCRRL 420
+ C +L
Sbjct: 669 NLCLKL 674
>05_06_0191 -
26265460-26267016,26267858-26268356,26268789-26268859,
26269079-26269515,26269626-26269681,26269682-26270479,
26270918-26270973
Length = 1157
Score = 29.5 bits (63), Expect = 3.7
Identities = 13/45 (28%), Positives = 24/45 (53%)
Frame = +1
Query: 304 VLRRGPTLHQHQGRHIRRKSLHLDLQILRQCSVSGCRRLPGKHFR 438
++R + + +GRH+R + + L+ILR + GC L +R
Sbjct: 54 LMRISTIVEEAEGRHVRNQGMLQQLKILRDEMLKGCYILDNFRYR 98
>11_01_0487 -
3763233-3763733,3763827-3764279,3765270-3765392,
3765822-3766122,3766283-3766644,3767117-3767713,
3768323-3769447
Length = 1153
Score = 28.7 bits (61), Expect = 6.5
Identities = 14/45 (31%), Positives = 24/45 (53%)
Frame = -1
Query: 618 RHLSAIQWTTHTIFRTSPRCLITEKLSQNRKPLLPIPSSLMKPLL 484
R +SA+ T T +P + ++L+ + LP+P L+ PLL
Sbjct: 35 RDVSAVARTVATEILAAPSSAVCKRLALDLLRALPLPPDLLDPLL 79
>05_03_0607 - 16149180-16149617,16149795-16150100
Length = 247
Score = 28.7 bits (61), Expect = 6.5
Identities = 16/36 (44%), Positives = 20/36 (55%)
Frame = -3
Query: 220 DYDWLPKEIVNQLKKSPKTPKQSPRARKAKRSAGDD 113
D D+LP+E N+ S K PK S + K KR DD
Sbjct: 138 DSDYLPEENNNRSSSSSKRPKGS-KIDKGKRVKADD 172
>02_05_1042 +
33718988-33720112,33720709-33721305,33721862-33722223,
33722383-33722683,33723149-33723271,33723535-33723990,
33724102-33724602
Length = 1154
Score = 28.7 bits (61), Expect = 6.5
Identities = 14/45 (31%), Positives = 25/45 (55%)
Frame = -1
Query: 618 RHLSAIQWTTHTIFRTSPRCLITEKLSQNRKPLLPIPSSLMKPLL 484
R +SA+ T T ++P + ++L+ + LP+P L+ PLL
Sbjct: 35 RDVSALARTVATEILSAPSSAVCKRLALDLLRALPLPPDLLDPLL 79
>06_03_0099 +
16633928-16638213,16638299-16638386,16638823-16638950,
16640008-16640278
Length = 1590
Score = 28.3 bits (60), Expect = 8.5
Identities = 12/34 (35%), Positives = 19/34 (55%)
Frame = -1
Query: 168 RRRSSRRAQGKQRDQQATTKKSFEVMIKRDIKHK 67
RR +SR QR T + +EV ++R+ KH+
Sbjct: 343 RRGASRYTDNNQRSDWRTEDRDYEVDVRREGKHR 376
>02_04_0195 +
20830849-20830950,20831498-20831690,20831800-20831904,
20832147-20832235,20832316-20832468,20832628-20832762,
20832849-20833015,20833519-20833613,20833707-20834080,
20834177-20834599
Length = 611
Score = 28.3 bits (60), Expect = 8.5
Identities = 18/59 (30%), Positives = 31/59 (52%), Gaps = 2/59 (3%)
Frame = -3
Query: 820 QVVGDDALVDDDESVVKSSQDIDT-TILFTKPVPSLGDLTFD-IQAGYPVEFFVGFINK 650
+V+G + L+D + K +D+D TI + P D I++ Y EFF+GF+ +
Sbjct: 81 EVLGGNELIDSQIDI-KFGRDVDKGTICSIELDPDKAKQLSDAIESSYWFEFFIGFVGE 138
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,390,472
Number of Sequences: 37544
Number of extensions: 448762
Number of successful extensions: 1124
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1085
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1122
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2467979640
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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