Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte16f05
         (876 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY069541-1|AAL39686.1|  302|Drosophila melanogaster LD26546p pro...   230   2e-60
AE014298-1340|AAF46502.1|  302|Drosophila melanogaster CG32701-P...   230   2e-60
AF132176-1|AAD34764.1|  797|Drosophila melanogaster unknown prot...    31   1.6  
AE014298-759|AAF46049.3|  857|Drosophila melanogaster CG32763-PA...    31   1.6  
BT001765-1|AAN71520.1|  402|Drosophila melanogaster RH09162p pro...    30   3.6  
AE014297-4550|AAN14220.1|  384|Drosophila melanogaster CG31030-P...    30   3.6  
AE014297-4549|ABI31219.1|  423|Drosophila melanogaster CG31030-P...    30   3.6  

>AY069541-1|AAL39686.1|  302|Drosophila melanogaster LD26546p
           protein.
          Length = 302

 Score =  230 bits (562), Expect = 2e-60
 Identities = 123/257 (47%), Positives = 161/257 (62%), Gaps = 22/257 (8%)
 Frame = -3

Query: 817 VVGDDALVDDDESVVKSSQ-DIDTTILFTKPVPSLGDLTFDIQAGYPVEFFVGFINKGSV 641
           V G+DA  D+D     SS  + DT +LFTKP+ + G    D+  G PVEF +GF NKG+ 
Sbjct: 47  VTGEDAEADEDSDTGSSSSPNADTYLLFTKPLYTPGQ-QLDLPGGKPVEFLIGFTNKGAE 105

Query: 640 DYVVESMEASFRYPMDYTYYIQNFTALPYNREVKPKQEATFAYSFIPNEAFAGRPFGLNV 461
           ++V+E++EASFRYPMD+ Y+IQNF+A+ YNREVKP  E+T +Y+F+P++ FAGRPFGLN+
Sbjct: 106 EFVIETVEASFRYPMDFNYFIQNFSAVAYNREVKPGFESTVSYTFLPSDQFAGRPFGLNI 165

Query: 460 QLNYRDASGNAYQEAVYNQTLNIVEVSEGLDGETFFLYVFXXXXXXXXXXXXXXXXXXXX 281
            L YRDA+G  Y EAV+N+T+ I EV EGLDGETFFLYV                     
Sbjct: 166 ALAYRDANGIQYNEAVFNETVLISEVDEGLDGETFFLYVLLAGIVVLLLVIGQQYLLGSS 225

Query: 280 XXXXXXXXXXXVETGTASE--VDYDWLPKEIVNQLKKSP---KTPK-------------- 158
                      +ETGTA++  +DYDW+P+E +  L+KSP   KTPK              
Sbjct: 226 GKRKRAAAKKVIETGTANDSTIDYDWVPQETLRALQKSPPKSKTPKTSPKPTKPASPKAA 285

Query: 157 --QSPRARKAKRSAGDD 113
             QSP+ RK KRSAGDD
Sbjct: 286 SQQSPKQRKVKRSAGDD 302


>AE014298-1340|AAF46502.1|  302|Drosophila melanogaster CG32701-PA
           protein.
          Length = 302

 Score =  230 bits (562), Expect = 2e-60
 Identities = 123/257 (47%), Positives = 161/257 (62%), Gaps = 22/257 (8%)
 Frame = -3

Query: 817 VVGDDALVDDDESVVKSSQ-DIDTTILFTKPVPSLGDLTFDIQAGYPVEFFVGFINKGSV 641
           V G+DA  D+D     SS  + DT +LFTKP+ + G    D+  G PVEF +GF NKG+ 
Sbjct: 47  VTGEDAEADEDSDTGSSSSPNADTYLLFTKPLYTPGQ-QLDLPGGKPVEFLIGFTNKGAE 105

Query: 640 DYVVESMEASFRYPMDYTYYIQNFTALPYNREVKPKQEATFAYSFIPNEAFAGRPFGLNV 461
           ++V+E++EASFRYPMD+ Y+IQNF+A+ YNREVKP  E+T +Y+F+P++ FAGRPFGLN+
Sbjct: 106 EFVIETVEASFRYPMDFNYFIQNFSAVAYNREVKPGFESTVSYTFLPSDQFAGRPFGLNI 165

Query: 460 QLNYRDASGNAYQEAVYNQTLNIVEVSEGLDGETFFLYVFXXXXXXXXXXXXXXXXXXXX 281
            L YRDA+G  Y EAV+N+T+ I EV EGLDGETFFLYV                     
Sbjct: 166 ALAYRDANGIQYNEAVFNETVLISEVDEGLDGETFFLYVLLAGIVVLLLVIGQQYLLGSS 225

Query: 280 XXXXXXXXXXXVETGTASE--VDYDWLPKEIVNQLKKSP---KTPK-------------- 158
                      +ETGTA++  +DYDW+P+E +  L+KSP   KTPK              
Sbjct: 226 GKRKRAAAKKVIETGTANDSTIDYDWVPQETLRALQKSPPKSKTPKTSPKPTKPASPKAA 285

Query: 157 --QSPRARKAKRSAGDD 113
             QSP+ RK KRSAGDD
Sbjct: 286 SQQSPKQRKVKRSAGDD 302


>AF132176-1|AAD34764.1|  797|Drosophila melanogaster unknown
           protein.
          Length = 797

 Score = 31.5 bits (68), Expect = 1.6
 Identities = 24/74 (32%), Positives = 37/74 (50%), Gaps = 1/74 (1%)
 Frame = -1

Query: 324 CWPSSQDSKLSLRWPGVDHHVQCLNPLKPAQPVK*TMTGYLKKL*INSKNLPRRR-SSRR 148
           C P++ D K   RW  + H+ Q    ++P QP    +   L+K    S  L  +R  SRR
Sbjct: 612 CLPTAADHKK--RWRQLKHNDQAPVHVEPTQP---DLNEQLRKELRQSHKLKLKRLRSRR 666

Query: 147 AQGKQRDQQATTKK 106
            + K+R Q+  TK+
Sbjct: 667 VREKRRLQETATKR 680


>AE014298-759|AAF46049.3|  857|Drosophila melanogaster CG32763-PA
           protein.
          Length = 857

 Score = 31.5 bits (68), Expect = 1.6
 Identities = 24/74 (32%), Positives = 37/74 (50%), Gaps = 1/74 (1%)
 Frame = -1

Query: 324 CWPSSQDSKLSLRWPGVDHHVQCLNPLKPAQPVK*TMTGYLKKL*INSKNLPRRR-SSRR 148
           C P++ D K   RW  + H+ Q    ++P QP    +   L+K    S  L  +R  SRR
Sbjct: 672 CLPTAADHKK--RWRQLKHNDQAPVHVEPTQP---DLNEQLRKELRQSHKLKLKRLRSRR 726

Query: 147 AQGKQRDQQATTKK 106
            + K+R Q+  TK+
Sbjct: 727 VREKRRLQETATKR 740


>BT001765-1|AAN71520.1|  402|Drosophila melanogaster RH09162p
           protein.
          Length = 402

 Score = 30.3 bits (65), Expect = 3.6
 Identities = 13/46 (28%), Positives = 24/46 (52%), Gaps = 5/46 (10%)
 Frame = -3

Query: 517 AYSFIPNEAFAGRPFGLNVQLNYRDASGNAYQE-----AVYNQTLN 395
           A++++P  + A  PFGLN  +     SG+  ++       YN+ +N
Sbjct: 106 AWTYLPQRSLAAEPFGLNANIEVVSLSGHGEEDDSEILLAYNEAVN 151


>AE014297-4550|AAN14220.1|  384|Drosophila melanogaster CG31030-PA,
           isoform A protein.
          Length = 384

 Score = 30.3 bits (65), Expect = 3.6
 Identities = 13/46 (28%), Positives = 24/46 (52%), Gaps = 5/46 (10%)
 Frame = -3

Query: 517 AYSFIPNEAFAGRPFGLNVQLNYRDASGNAYQE-----AVYNQTLN 395
           A++++P  + A  PFGLN  +     SG+  ++       YN+ +N
Sbjct: 88  AWTYLPQRSLAAEPFGLNANIEVVSLSGHGEEDDSEILLAYNEAVN 133


>AE014297-4549|ABI31219.1|  423|Drosophila melanogaster CG31030-PB,
           isoform B protein.
          Length = 423

 Score = 30.3 bits (65), Expect = 3.6
 Identities = 13/46 (28%), Positives = 24/46 (52%), Gaps = 5/46 (10%)
 Frame = -3

Query: 517 AYSFIPNEAFAGRPFGLNVQLNYRDASGNAYQE-----AVYNQTLN 395
           A++++P  + A  PFGLN  +     SG+  ++       YN+ +N
Sbjct: 88  AWTYLPQRSLAAEPFGLNANIEVVSLSGHGEEDDSEILLAYNEAVN 133


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 36,086,411
Number of Sequences: 53049
Number of extensions: 768761
Number of successful extensions: 2032
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1918
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2030
length of database: 24,988,368
effective HSP length: 84
effective length of database: 20,532,252
effective search space used: 4250176164
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)