Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte16f05
         (876 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024852-1|AAK66027.1|  257|Caenorhabditis elegans Hypothetical ...   171   6e-43
U29614-1|AAM54191.1| 1061|Caenorhabditis elegans Temporarily ass...    33   0.35 
Z70309-10|CAA94361.2|  324|Caenorhabditis elegans Hypothetical p...    29   3.3  

>AC024852-1|AAK66027.1|  257|Caenorhabditis elegans Hypothetical
           protein Y71F9AM.6 protein.
          Length = 257

 Score =  171 bits (416), Expect = 6e-43
 Identities = 90/225 (40%), Positives = 129/225 (57%), Gaps = 1/225 (0%)
 Frame = -3

Query: 793 DDDESVVKSSQDIDTTILFTKPVPSLGDLTFDIQAGYPVEFFVGFINKGSVDYVVESMEA 614
           +DD+  + +S D      F +P  S  ++  +   G PV++ +GF NKG  D+VV+  E 
Sbjct: 37  EDDDLTIGASPDAGLAFHFVQP--SDANVVREFYTGKPVKYLIGFQNKGEKDFVVKYAET 94

Query: 613 SFRYPMDYTYYIQNFTALPYNREVKPKQEATFAYSFIPNEAFAGRPFGLNVQLNYRDASG 434
           SFR+P D++Y++QNFT   YNR V PK+E T  Y F  +E FAGRP GL V ++Y+DA G
Sbjct: 95  SFRFPTDHSYHLQNFTRGEYNRRVAPKEEVTLDYGFYAHETFAGRPVGLVVNVHYQDADG 154

Query: 433 NAYQEAVYNQTLNIVEVSEGLDGETFFLYVFXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 254
           N +   VYNQT+NI+E   G  GET FL++F                             
Sbjct: 155 NVFVNNVYNQTINIMEDDSGFSGETGFLFIF-FVALSIGGLYLSNQFLSKLSRKSGLSKR 213

Query: 253 XXVETGTASEVDYDWLPKEIV-NQLKKSPKTPKQSPRARKAKRSA 122
             VE GT+SEVD++W+P++ V N+ K+SP T   SP+ARK+ + A
Sbjct: 214 RVVEQGTSSEVDFEWIPRDAVKNKEKRSPAT--VSPKARKSAKKA 256


>U29614-1|AAM54191.1| 1061|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 279, isoform b protein.
          Length = 1061

 Score = 32.7 bits (71), Expect = 0.35
 Identities = 20/44 (45%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
 Frame = -1

Query: 615 HLSAIQWTTH-TIFRTSPRCLITEKLSQNRKPLLPIPSSLMKPL 487
           HL+ I  TTH TIF  SPR +   K SQ   P  P  +S M+P+
Sbjct: 7   HLTGITGTTHFTIFGASPRSMSLVKNSQETPP-FPGMNSTMRPV 49


>Z70309-10|CAA94361.2|  324|Caenorhabditis elegans Hypothetical
           protein R102.7 protein.
          Length = 324

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 22/63 (34%), Positives = 34/63 (53%), Gaps = 6/63 (9%)
 Frame = -1

Query: 558 LITEKLSQNRKPLLPIPSSL------MKPLLEDLSD*MYSLITEMPAEMLTRKPSTTRH* 397
           +I +  +Q+RK L   PS++      ++P LED  D     + + P+    +KPSTTR  
Sbjct: 218 IIPDLHNQSRKGLKLAPSTIREHTVSVQPTLED--DMTQKKVVKKPSSRPHKKPSTTREH 275

Query: 396 TLS 388
           TLS
Sbjct: 276 TLS 278


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,641,356
Number of Sequences: 27780
Number of extensions: 396901
Number of successful extensions: 1192
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1067
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1192
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2202903780
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)