Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte16f03
         (299 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4G8.04 |||GTPase activating protein |Schizosaccharomyces pom...    26   1.4  
SPAC4A8.09c |cwf21||complexed with Cdc5 protein Cwf21 |Schizosac...    25   2.4  
SPAC17G6.04c |cpp1||protein farnesyltransferase beta subunit Cpp...    25   3.1  

>SPAC4G8.04 |||GTPase activating protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 772

 Score = 25.8 bits (54), Expect = 1.4
 Identities = 12/46 (26%), Positives = 22/46 (47%)
 Frame = +2

Query: 41  IGVNQTVSINAQCNKASPRWHLFLGGMTIIIPVCVQLRLSIVCCGS 178
           IG+    SI  +      RWH F   +   +P+C + ++ + C G+
Sbjct: 475 IGLLGISSIGVKGRHGKKRWHKFRELVKNGVPLCYKAKVWLECSGA 520


>SPAC4A8.09c |cwf21||complexed with Cdc5 protein Cwf21
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 293

 Score = 25.0 bits (52), Expect = 2.4
 Identities = 11/35 (31%), Positives = 20/35 (57%)
 Frame = +1

Query: 28  HEVSHWSQPNCEHKRAVQQSLAKMAFIPRRNDNYH 132
           H  S+ S    E +R+  +S ++ + +PRR+ N H
Sbjct: 218 HYDSYSSYDELERRRSSNESYSRRSELPRRDYNRH 252


>SPAC17G6.04c |cpp1||protein farnesyltransferase beta subunit
           Cpp1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 382

 Score = 24.6 bits (51), Expect = 3.1
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = +1

Query: 109 PRRNDNYHSCLC 144
           P+R D YH+C C
Sbjct: 309 PKRPDQYHTCYC 320


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,246,940
Number of Sequences: 5004
Number of extensions: 22469
Number of successful extensions: 48
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 48
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 48
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 73700136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)