Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte16f03
         (299 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0035 + 22304934-22305305,22305335-22305904,22306354-22306836     27   3.6  
01_03_0092 - 12386381-12386401,12386580-12386968,12388346-123885...    26   4.7  
06_03_0875 - 25584789-25585307,25585424-25585570,25585734-255858...    26   6.3  
03_06_0412 + 33749039-33749077,33749585-33749728,33750110-337508...    26   6.3  
11_03_0097 + 9967351-9967969,9968180-9968259                           25   8.3  
05_04_0064 - 17613070-17614749                                         25   8.3  

>04_04_0035 + 22304934-22305305,22305335-22305904,22306354-22306836
          Length = 474

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 2/38 (5%)
 Frame = +1

Query: 4   SSPHLYLAHEVSHWSQPNCEH--KRAVQQSLAKMAFIP 111
           SSP L LA  V+ W +P C+     A+ ++ A M   P
Sbjct: 56  SSPRLNLASFVTTWMEPECDRLILEAINKNYADMDEYP 93


>01_03_0092 -
           12386381-12386401,12386580-12386968,12388346-12388541,
           12388872-12388941,12389599-12389822
          Length = 299

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 11/34 (32%), Positives = 18/34 (52%)
 Frame = -3

Query: 111 RNKCHLGEALLHCAFMLTVWLTPMAYFMSQIKVW 10
           R +C L +    C+F+  V+   +A   S IK+W
Sbjct: 262 RPRCFLDDVSDFCSFVFYVFFIWLARLASAIKIW 295


>06_03_0875 -
           25584789-25585307,25585424-25585570,25585734-25585897,
           25586015-25586172,25586536-25586904,25586998-25587209,
           25587439-25588059,25588561-25588699,25588968-25589044,
           25589120-25589800,25590641-25590889
          Length = 1111

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = -3

Query: 102 CHLGEALLHCAFMLTVWLTPMAYFMSQIKVWR 7
           CH+ + +L  AF+L+VWL  + +    I  WR
Sbjct: 117 CHVLQFVLRLAFVLSVWLMIIPFITYWI--WR 146


>03_06_0412 +
           33749039-33749077,33749585-33749728,33750110-33750862,
           33750959-33751778,33751893-33752140,33752285-33752391,
           33753098-33753248,33753339-33753530,33753905-33754042
          Length = 863

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 18/48 (37%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
 Frame = -3

Query: 198 TKLLRRPLPQQTMLKRNWTQTGMIIVIPPRNKCHLGEALLH-CAFMLT 58
           TK +RR    QT  + +W+ + +I  I PR      EAL H   F+LT
Sbjct: 572 TKNIRRT---QTKSRFSWSDSRLIDTIEPREYIDNKEALFHGLDFLLT 616


>11_03_0097 + 9967351-9967969,9968180-9968259
          Length = 232

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 6/19 (31%), Positives = 14/19 (73%)
 Frame = -1

Query: 224 SFQICYGISQNYYEDRYHN 168
           + ++CY +SQ + ++ YH+
Sbjct: 163 ALELCYSMSQRFLDEHYHS 181


>05_04_0064 - 17613070-17614749
          Length = 559

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 12/29 (41%), Positives = 15/29 (51%)
 Frame = -2

Query: 94  WRGFVALRVYAHSLVDSNGLLHEPNKGVA 8
           WR   AL V AH+L  + G LH+     A
Sbjct: 153 WRWTRALTVMAHALSATQGHLHDERSAAA 181


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,919,307
Number of Sequences: 37544
Number of extensions: 141264
Number of successful extensions: 280
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 277
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 280
length of database: 14,793,348
effective HSP length: 71
effective length of database: 12,127,724
effective search space used: 339576272
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)