Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte16f03
         (299 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U80031-3|AAB37613.1|  524|Caenorhabditis elegans Hypothetical pr...    30   0.35 
AF025452-4|AAB70945.1|  642|Caenorhabditis elegans Hypothetical ...    30   0.35 
U80442-5|AAB37668.2|  794|Caenorhabditis elegans Hypothetical pr...    28   1.1  
U61948-5|AAB03149.2|  509|Caenorhabditis elegans Hypothetical pr...    28   1.4  
AC006624-3|AAF39786.2|  301|Caenorhabditis elegans Hypothetical ...    28   1.4  
U80031-5|AAB37615.1|  547|Caenorhabditis elegans Hypothetical pr...    27   2.5  
U40410-4|AAA81393.1|  259|Caenorhabditis elegans Hypothetical pr...    27   2.5  
AF039053-3|AAC25880.2|  349|Caenorhabditis elegans Hypothetical ...    26   4.4  
Z69716-2|CAA93527.1|  474|Caenorhabditis elegans Hypothetical pr...    26   5.8  
Z50029-9|CAA90345.4| 1012|Caenorhabditis elegans Hypothetical pr...    26   5.8  
Z50028-6|CAA90339.4| 1012|Caenorhabditis elegans Hypothetical pr...    26   5.8  
X76114-1|CAA53720.1|  290|Caenorhabditis elegans Oxoglutarate/ma...    26   5.8  
U23525-8|AAC46570.1|  290|Caenorhabditis elegans Hypothetical pr...    26   5.8  
CU457740-8|CAM36338.1|  362|Caenorhabditis elegans Hypothetical ...    26   5.8  

>U80031-3|AAB37613.1|  524|Caenorhabditis elegans Hypothetical
           protein B0554.4 protein.
          Length = 524

 Score = 29.9 bits (64), Expect = 0.35
 Identities = 13/34 (38%), Positives = 21/34 (61%), Gaps = 2/34 (5%)
 Frame = +2

Query: 44  GVNQTVSINAQCNKASPRWHLF--LGGMTIIIPV 139
           G +QTV+INA+C+     W+    LGG+ +  P+
Sbjct: 482 GFDQTVTINAECSNVDSIWYYISELGGLPVKKPL 515



 Score = 27.5 bits (58), Expect = 1.9
 Identities = 10/17 (58%), Positives = 13/17 (76%)
 Frame = +2

Query: 53  QTVSINAQCNKASPRWH 103
           QTV+INA+CN A   W+
Sbjct: 146 QTVTINAECNSADMVWY 162


>AF025452-4|AAB70945.1|  642|Caenorhabditis elegans Hypothetical
           protein B0454.8 protein.
          Length = 642

 Score = 29.9 bits (64), Expect = 0.35
 Identities = 11/17 (64%), Positives = 14/17 (82%)
 Frame = +2

Query: 53  QTVSINAQCNKASPRWH 103
           QTV+INAQCN A  +W+
Sbjct: 128 QTVTINAQCNTADMKWN 144



 Score = 27.9 bits (59), Expect = 1.4
 Identities = 11/17 (64%), Positives = 13/17 (76%)
 Frame = +2

Query: 53  QTVSINAQCNKASPRWH 103
           QTV+INAQCN A   W+
Sbjct: 248 QTVTINAQCNTADMIWN 264



 Score = 27.9 bits (59), Expect = 1.4
 Identities = 11/17 (64%), Positives = 13/17 (76%)
 Frame = +2

Query: 53  QTVSINAQCNKASPRWH 103
           QTV+INAQCN A   W+
Sbjct: 368 QTVTINAQCNTADMIWN 384



 Score = 27.9 bits (59), Expect = 1.4
 Identities = 11/17 (64%), Positives = 13/17 (76%)
 Frame = +2

Query: 53  QTVSINAQCNKASPRWH 103
           QTV+INAQCN A   W+
Sbjct: 488 QTVTINAQCNTADMIWN 504


>U80442-5|AAB37668.2|  794|Caenorhabditis elegans Hypothetical
           protein T20F5.6 protein.
          Length = 794

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 17/46 (36%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
 Frame = +2

Query: 62  SINAQCNKASPRWHLFLGGMTIIIPVCVQ-LRLSIVCCGSGLRSNF 196
           +I  QC K       FLGG T+I P C Q  R S+      + +NF
Sbjct: 138 TICLQCIKKLLNTRTFLGGNTVICPSCRQNTRYSLTTPADKIPTNF 183


>U61948-5|AAB03149.2|  509|Caenorhabditis elegans Hypothetical
           protein C46A5.2 protein.
          Length = 509

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 11/19 (57%), Positives = 12/19 (63%)
 Frame = -1

Query: 245 NGFILGDSFQICYGISQNY 189
           NG+   D FQ CYG SQ Y
Sbjct: 233 NGYTCTDLFQTCYGGSQTY 251


>AC006624-3|AAF39786.2|  301|Caenorhabditis elegans Hypothetical
           protein C53D5.4 protein.
          Length = 301

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 14/39 (35%), Positives = 22/39 (56%)
 Frame = +1

Query: 10  PHLYLAHEVSHWSQPNCEHKRAVQQSLAKMAFIPRRNDN 126
           P LY  H + H SQ      +  Q++LA +A +P+ +DN
Sbjct: 164 PDLYQHHHIPHTSQ------QVAQENLAMLANVPKLDDN 196


>U80031-5|AAB37615.1|  547|Caenorhabditis elegans Hypothetical
           protein B0554.2 protein.
          Length = 547

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 12/27 (44%), Positives = 17/27 (62%), Gaps = 2/27 (7%)
 Frame = +2

Query: 53  QTVSINAQCNKASPRWHLF--LGGMTI 127
           QTV+INA+C+     W+    +GG TI
Sbjct: 150 QTVTINAECSSVDMVWYYVTTIGGQTI 176



 Score = 27.1 bits (57), Expect = 2.5
 Identities = 11/31 (35%), Positives = 19/31 (61%), Gaps = 2/31 (6%)
 Frame = +2

Query: 53  QTVSINAQCNKASPRWH--LFLGGMTIIIPV 139
           QTV+INA+C+     W+    + G T+ +P+
Sbjct: 265 QTVAINAECSSVDSIWNYVTVVAGQTVKVPM 295


>U40410-4|AAA81393.1|  259|Caenorhabditis elegans Hypothetical
           protein C54G7.1 protein.
          Length = 259

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 11/14 (78%), Positives = 11/14 (78%), Gaps = 2/14 (14%)
 Frame = +1

Query: 112 RRNDNYHSCL--CP 147
           RRND YHSCL  CP
Sbjct: 72  RRNDEYHSCLQRCP 85


>AF039053-3|AAC25880.2|  349|Caenorhabditis elegans Hypothetical
           protein C45H4.13 protein.
          Length = 349

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 11/34 (32%), Positives = 16/34 (47%)
 Frame = -1

Query: 272 SPCTYLNWFNGFILGDSFQICYGISQNYYEDRYH 171
           SP  Y N++ G+         YG + NYY   Y+
Sbjct: 292 SPSYYSNYYGGYNNYGYNNYGYGYNNNYYSGNYY 325


>Z69716-2|CAA93527.1|  474|Caenorhabditis elegans Hypothetical
           protein C04B4.2 protein.
          Length = 474

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 23/73 (31%), Positives = 32/73 (43%), Gaps = 10/73 (13%)
 Frame = +2

Query: 95  RWHLFLGGMTIIIPV-------CVQLRLSIVCCGSGLRS--NFVRFRNIFETSLLI*NR* 247
           R HLF  G   ++ +        + L LS + C  G+ S  N   F       L +  R 
Sbjct: 192 RTHLFTVGWNDLVTLQSPDFYQAIVLILSYILCNGGVTSTENVFEFYQTDNVPLSVRQRT 251

Query: 248 TS-LNRYREIIDF 283
            S +N +REIIDF
Sbjct: 252 GSDMNSFREIIDF 264


>Z50029-9|CAA90345.4| 1012|Caenorhabditis elegans Hypothetical
           protein F46F6.2 protein.
          Length = 1012

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 11/33 (33%), Positives = 21/33 (63%)
 Frame = -3

Query: 282 KSIISLYLFKLV*RFHIRRLVSNMLRNLTKLLR 184
           K+ + L +  L+ RFH  +L+ +  RN+ ++LR
Sbjct: 228 KTKVELAIDDLIIRFHKEKLIMDGSRNMIRILR 260


>Z50028-6|CAA90339.4| 1012|Caenorhabditis elegans Hypothetical
           protein F46F6.2 protein.
          Length = 1012

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 11/33 (33%), Positives = 21/33 (63%)
 Frame = -3

Query: 282 KSIISLYLFKLV*RFHIRRLVSNMLRNLTKLLR 184
           K+ + L +  L+ RFH  +L+ +  RN+ ++LR
Sbjct: 228 KTKVELAIDDLIIRFHKEKLIMDGSRNMIRILR 260


>X76114-1|CAA53720.1|  290|Caenorhabditis elegans
           Oxoglutarate/malate carrier protein protein.
          Length = 290

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 12/29 (41%), Positives = 15/29 (51%)
 Frame = -3

Query: 90  EALLHCAFMLTVWLTPMAYFMSQIKVWRR 4
           + +L C FM T  L PM +F   I  W R
Sbjct: 236 KGILDC-FMFTAKLGPMGFFKGFIPAWAR 263


>U23525-8|AAC46570.1|  290|Caenorhabditis elegans Hypothetical
           protein K11G12.5 protein.
          Length = 290

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 12/29 (41%), Positives = 15/29 (51%)
 Frame = -3

Query: 90  EALLHCAFMLTVWLTPMAYFMSQIKVWRR 4
           + +L C FM T  L PM +F   I  W R
Sbjct: 236 KGILDC-FMFTAKLGPMGFFKGFIPAWAR 263


>CU457740-8|CAM36338.1|  362|Caenorhabditis elegans Hypothetical
           protein C50E10.8 protein.
          Length = 362

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 18/61 (29%), Positives = 29/61 (47%), Gaps = 6/61 (9%)
 Frame = +2

Query: 71  AQCNKASPRWHLFLGG------MTIIIPVCVQLRLSIVCCGSGLRSNFVRFRNIFETSLL 232
           A+ +  S  W LFLGG      M+I+    + L +  VC    ++ N+   R  +  +LL
Sbjct: 113 ARLDSISSAWPLFLGGALTWYYMSILTTCLITLSIERVCASFFIK-NYENTRRTYLLALL 171

Query: 233 I 235
           I
Sbjct: 172 I 172


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,917,911
Number of Sequences: 27780
Number of extensions: 128809
Number of successful extensions: 333
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 317
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 333
length of database: 12,740,198
effective HSP length: 70
effective length of database: 10,795,598
effective search space used: 313072342
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)