Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte16f03
         (299 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    23   0.61 
AF091732-1|AAD02869.2|  154|Apis mellifera long-wavelength rhodo...    23   0.61 
EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage prot...    22   1.9  
AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic ac...    21   2.5  
AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase pro...    21   2.5  
AF441189-1|AAL73401.1|  134|Apis mellifera ribosomal protein 49 ...    20   7.6  

>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 23.4 bits (48), Expect = 0.61
 Identities = 8/18 (44%), Positives = 13/18 (72%)
 Frame = -1

Query: 254 NWFNGFILGDSFQICYGI 201
           ++FN  +L  S+ +CYGI
Sbjct: 205 DYFNRGLLSASYLVCYGI 222


>AF091732-1|AAD02869.2|  154|Apis mellifera long-wavelength
           rhodopsin protein.
          Length = 154

 Score = 23.4 bits (48), Expect = 0.61
 Identities = 8/18 (44%), Positives = 13/18 (72%)
 Frame = -1

Query: 254 NWFNGFILGDSFQICYGI 201
           ++FN  +L  S+ +CYGI
Sbjct: 81  DYFNRGLLSASYLVCYGI 98


>EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage protein
           protein.
          Length = 1010

 Score = 21.8 bits (44), Expect = 1.9
 Identities = 9/48 (18%), Positives = 20/48 (41%)
 Frame = +1

Query: 19  YLAHEVSHWSQPNCEHKRAVQQSLAKMAFIPRRNDNYHSCLCPIAFKH 162
           +L  + + WSQ   +  + VQQ +       +++   H     + + H
Sbjct: 759 WLGQQGNSWSQQQVQQAQQVQQQMQAAMAAVQQSQQRHQHAAQMIYGH 806


>AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic
           acetylcholine Apisa7-2 subunit protein.
          Length = 461

 Score = 21.4 bits (43), Expect = 2.5
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = +1

Query: 103 FIPRRNDNYHSCLCP 147
           F  RRN  Y+SC CP
Sbjct: 184 FSARRNVEYYSC-CP 197


>AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase
          protein.
          Length = 588

 Score = 21.4 bits (43), Expect = 2.5
 Identities = 7/18 (38%), Positives = 11/18 (61%)
 Frame = -2

Query: 94 WRGFVALRVYAHSLVDSN 41
          W+  +  +VY  S +DSN
Sbjct: 25 WKNAIFYQVYPRSFMDSN 42


>AF441189-1|AAL73401.1|  134|Apis mellifera ribosomal protein 49
           protein.
          Length = 134

 Score = 19.8 bits (39), Expect = 7.6
 Identities = 7/17 (41%), Positives = 10/17 (58%)
 Frame = -3

Query: 195 KLLRRPLPQQTMLKRNW 145
           K +R    + + LKRNW
Sbjct: 18  KFIRHQSDRYSKLKRNW 34


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 85,451
Number of Sequences: 438
Number of extensions: 1676
Number of successful extensions: 9
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 49
effective length of database: 124,881
effective search space used:  6244050
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)