Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte16f02
(596 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AK123049-1|BAC85525.1| 128|Homo sapiens protein. 32 1.8
U90661-1|AAB50242.1| 1441|Homo sapiens steroid receptor coactiva... 31 3.1
U82827-1|AAC50993.1| 388|Homo sapiens transcription factor HOXA... 31 3.1
U59302-1|AAC50631.1| 1440|Homo sapiens steroid receptor coactiva... 31 3.1
U40396-1|AAC50305.1| 1061|Homo sapiens steroid receptor coactiva... 31 3.1
EF660499-1|ABS29266.1| 1441|Homo sapiens nuclear receptor coacti... 31 3.1
BC111534-1|AAI11535.1| 1399|Homo sapiens nuclear receptor coacti... 31 3.1
BC111533-1|AAI11534.1| 1441|Homo sapiens nuclear receptor coacti... 31 3.1
AJ000882-1|CAA04372.1| 1399|Homo sapiens steroid receptor coacti... 31 3.1
AJ000881-1|CAA04371.1| 1441|Homo sapiens steroid receptor coacti... 31 3.1
AC013459-1|AAX93184.1| 1441|Homo sapiens unknown protein. 31 3.1
Z15025-1|CAA78744.1| 1870|Homo sapiens Bat2 protein. 31 4.1
M33518-1|AAA35586.1| 2142|Homo sapiens protein ( Human HLA-B-ass... 31 4.1
M33509-1|AAA35585.1| 2142|Homo sapiens protein ( Human HLA-B-ass... 31 4.1
AK126761-1|BAC86677.1| 134|Homo sapiens protein ( Homo sapiens ... 30 5.4
D87073-1|BAA13242.2| 1696|Homo sapiens KIAA0236 protein. 30 7.2
BC075791-1|AAH75791.1| 388|Homo sapiens homeobox A13 protein. 29 9.5
AB084276-1|BAC07172.1| 211|Homo sapiens prepro-Neuropeptide W p... 29 9.5
>AK123049-1|BAC85525.1| 128|Homo sapiens protein.
Length = 128
Score = 31.9 bits (69), Expect = 1.8
Identities = 18/57 (31%), Positives = 24/57 (42%)
Frame = +1
Query: 373 CPPSAGLCSSTSTSTAPRHDVARSGRGPPPRSAAASSRCRWTCRADASCRSHSRIPW 543
C P +G ++T PR + GR PPR+A+ RA C S PW
Sbjct: 60 CSPHSGTANATGQPAVPRKE--SQGRETPPRAASVHP----AARASYLCLSKQSAPW 110
>U90661-1|AAB50242.1| 1441|Homo sapiens steroid receptor
coactivator-1 protein.
Length = 1441
Score = 31.1 bits (67), Expect = 3.1
Identities = 17/44 (38%), Positives = 21/44 (47%)
Frame = +1
Query: 400 STSTSTAPRHDVARSGRGPPPRSAAASSRCRWTCRADASCRSHS 531
S + S +P H VARS PP S S+R +D SHS
Sbjct: 389 SVNPSISPAHGVARSSTLPPSNSNMVSTRINRQQSSDLHSSSHS 432
>U82827-1|AAC50993.1| 388|Homo sapiens transcription factor HOXA13
protein.
Length = 388
Score = 31.1 bits (67), Expect = 3.1
Identities = 16/55 (29%), Positives = 24/55 (43%)
Frame = +1
Query: 367 GRCPPSAGLCSSTSTSTAPRHDVARSGRGPPPRSAAASSRCRWTCRADASCRSHS 531
G PPSA ++ + + A A S GP P AA+ + A+ +S S
Sbjct: 110 GEAPPSAAAAAAAAAAAAAAAAAASSSGGPGPAGPAAAEAAKQCSPCSAAAQSSS 164
>U59302-1|AAC50631.1| 1440|Homo sapiens steroid receptor
coactivator-1 F-SRC-1 protein.
Length = 1440
Score = 31.1 bits (67), Expect = 3.1
Identities = 17/44 (38%), Positives = 21/44 (47%)
Frame = +1
Query: 400 STSTSTAPRHDVARSGRGPPPRSAAASSRCRWTCRADASCRSHS 531
S + S +P H VARS PP S S+R +D SHS
Sbjct: 389 SVNPSISPAHGVARSSTLPPSNSNMVSTRINRQQSSDLHSSSHS 432
>U40396-1|AAC50305.1| 1061|Homo sapiens steroid receptor coactivator
protein.
Length = 1061
Score = 31.1 bits (67), Expect = 3.1
Identities = 17/44 (38%), Positives = 21/44 (47%)
Frame = +1
Query: 400 STSTSTAPRHDVARSGRGPPPRSAAASSRCRWTCRADASCRSHS 531
S + S +P H VARS PP S S+R +D SHS
Sbjct: 9 SVNPSISPAHGVARSSTLPPSNSNMVSTRINRQQSSDLHSSSHS 52
>EF660499-1|ABS29266.1| 1441|Homo sapiens nuclear receptor
coactivator 1 protein.
Length = 1441
Score = 31.1 bits (67), Expect = 3.1
Identities = 17/44 (38%), Positives = 21/44 (47%)
Frame = +1
Query: 400 STSTSTAPRHDVARSGRGPPPRSAAASSRCRWTCRADASCRSHS 531
S + S +P H VARS PP S S+R +D SHS
Sbjct: 389 SVNPSISPAHGVARSSTLPPSNSNMVSTRINRQQSSDLHSSSHS 432
>BC111534-1|AAI11535.1| 1399|Homo sapiens nuclear receptor
coactivator 1 protein.
Length = 1399
Score = 31.1 bits (67), Expect = 3.1
Identities = 17/44 (38%), Positives = 21/44 (47%)
Frame = +1
Query: 400 STSTSTAPRHDVARSGRGPPPRSAAASSRCRWTCRADASCRSHS 531
S + S +P H VARS PP S S+R +D SHS
Sbjct: 389 SVNPSISPAHGVARSSTLPPSNSNMVSTRINRQQSSDLHSSSHS 432
>BC111533-1|AAI11534.1| 1441|Homo sapiens nuclear receptor
coactivator 1 protein.
Length = 1441
Score = 31.1 bits (67), Expect = 3.1
Identities = 17/44 (38%), Positives = 21/44 (47%)
Frame = +1
Query: 400 STSTSTAPRHDVARSGRGPPPRSAAASSRCRWTCRADASCRSHS 531
S + S +P H VARS PP S S+R +D SHS
Sbjct: 389 SVNPSISPAHGVARSSTLPPSNSNMVSTRINRQQSSDLHSSSHS 432
>AJ000882-1|CAA04372.1| 1399|Homo sapiens steroid receptor
coactivator 1e protein.
Length = 1399
Score = 31.1 bits (67), Expect = 3.1
Identities = 17/44 (38%), Positives = 21/44 (47%)
Frame = +1
Query: 400 STSTSTAPRHDVARSGRGPPPRSAAASSRCRWTCRADASCRSHS 531
S + S +P H VARS PP S S+R +D SHS
Sbjct: 389 SVNPSISPAHGVARSSTLPPSNSNMVSTRINRQQSSDLHSSSHS 432
>AJ000881-1|CAA04371.1| 1441|Homo sapiens steroid receptor
coactivator protein.
Length = 1441
Score = 31.1 bits (67), Expect = 3.1
Identities = 17/44 (38%), Positives = 21/44 (47%)
Frame = +1
Query: 400 STSTSTAPRHDVARSGRGPPPRSAAASSRCRWTCRADASCRSHS 531
S + S +P H VARS PP S S+R +D SHS
Sbjct: 389 SVNPSISPAHGVARSSTLPPSNSNMVSTRINRQQSSDLHSSSHS 432
>AC013459-1|AAX93184.1| 1441|Homo sapiens unknown protein.
Length = 1441
Score = 31.1 bits (67), Expect = 3.1
Identities = 17/44 (38%), Positives = 21/44 (47%)
Frame = +1
Query: 400 STSTSTAPRHDVARSGRGPPPRSAAASSRCRWTCRADASCRSHS 531
S + S +P H VARS PP S S+R +D SHS
Sbjct: 389 SVNPSISPAHGVARSSTLPPSNSNMVSTRINRQQSSDLHSSSHS 432
>Z15025-1|CAA78744.1| 1870|Homo sapiens Bat2 protein.
Length = 1870
Score = 30.7 bits (66), Expect = 4.1
Identities = 15/49 (30%), Positives = 20/49 (40%)
Frame = +1
Query: 376 PPSAGLCSSTSTSTAPRHDVARSGRGPPPRSAAASSRCRWTCRADASCR 522
PP T + +RSG GPPP + + RW R +S R
Sbjct: 884 PPKEETAQLTGPEAGRKLPASRSGAGPPPPRRESRTETRWGPRPGSSRR 932
>M33518-1|AAA35586.1| 2142|Homo sapiens protein ( Human
HLA-B-associated transcript 2 (BAT2) gene, 3' end. ).
Length = 2142
Score = 30.7 bits (66), Expect = 4.1
Identities = 15/49 (30%), Positives = 20/49 (40%)
Frame = +1
Query: 376 PPSAGLCSSTSTSTAPRHDVARSGRGPPPRSAAASSRCRWTCRADASCR 522
PP T + +RSG GPPP + + RW R +S R
Sbjct: 873 PPKEETAQLTGPEAGRKLPASRSGAGPPPPRRESRTETRWGPRPGSSRR 921
>M33509-1|AAA35585.1| 2142|Homo sapiens protein ( Human
HLA-B-associated transcript 2 (BAT2) mRNA, complete cds.
).
Length = 2142
Score = 30.7 bits (66), Expect = 4.1
Identities = 15/49 (30%), Positives = 20/49 (40%)
Frame = +1
Query: 376 PPSAGLCSSTSTSTAPRHDVARSGRGPPPRSAAASSRCRWTCRADASCR 522
PP T + +RSG GPPP + + RW R +S R
Sbjct: 873 PPKEETAQLTGPEAGRKLPASRSGAGPPPPRRESRTETRWGPRPGSSRR 921
>AK126761-1|BAC86677.1| 134|Homo sapiens protein ( Homo sapiens
cDNA FLJ44808 fis, clone BRACE3044090. ).
Length = 134
Score = 30.3 bits (65), Expect = 5.4
Identities = 15/27 (55%), Positives = 15/27 (55%)
Frame = -1
Query: 377 GQRPASAQLVQQHGGAPHRQRPRGLLL 297
G PASA G HR RPRGLLL
Sbjct: 87 GDLPASASQSAGIAGVSHRARPRGLLL 113
>D87073-1|BAA13242.2| 1696|Homo sapiens KIAA0236 protein.
Length = 1696
Score = 29.9 bits (64), Expect = 7.2
Identities = 15/55 (27%), Positives = 22/55 (40%)
Frame = +1
Query: 373 CPPSAGLCSSTSTSTAPRHDVARSGRGPPPRSAAASSRCRWTCRADASCRSHSRI 537
CP +A ++ RH A RGP P C +TC+ + H R+
Sbjct: 1149 CPFTAPAATALRLHQKRRHPTAAPARGPRPHLQCGD--CGFTCKQSRCMQQHRRL 1201
>BC075791-1|AAH75791.1| 388|Homo sapiens homeobox A13 protein.
Length = 388
Score = 29.5 bits (63), Expect = 9.5
Identities = 15/55 (27%), Positives = 23/55 (41%)
Frame = +1
Query: 367 GRCPPSAGLCSSTSTSTAPRHDVARSGRGPPPRSAAASSRCRWTCRADASCRSHS 531
G PPSA ++ + + A A S GP P A + + A+ +S S
Sbjct: 110 GEAPPSAAAAAAAAAAAAAAAAAASSSGGPGPAGPAGAEAAKQCSPCSAAAQSSS 164
>AB084276-1|BAC07172.1| 211|Homo sapiens prepro-Neuropeptide W
polypeptide protein.
Length = 211
Score = 29.5 bits (63), Expect = 9.5
Identities = 21/64 (32%), Positives = 28/64 (43%)
Frame = +1
Query: 367 GRCPPSAGLCSSTSTSTAPRHDVARSGRGPPPRSAAASSRCRWTCRADASCRSHSRIPWL 546
G P S STA R + A RGPP R+A +S W + S R+ L
Sbjct: 8 GSPPASCAPVPGRPNSTA-RPNPAEPVRGPPRRAAVDASALAWRPGERGAPASRPRLALL 66
Query: 547 MLVL 558
+L+L
Sbjct: 67 LLLL 70
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 62,028,694
Number of Sequences: 237096
Number of extensions: 1128372
Number of successful extensions: 4035
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 3780
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4025
length of database: 76,859,062
effective HSP length: 86
effective length of database: 56,468,806
effective search space used: 6324506272
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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