Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte16f02
(596 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AB264313-1|BAF43600.1| 900|Apis mellifera ecdysone-induced prot... 23 2.3
AY569716-1|AAS86669.1| 406|Apis mellifera complementary sex det... 21 6.9
AF514804-1|AAM51823.1| 537|Apis mellifera neuronal nicotinic ac... 21 6.9
DQ325094-1|ABD14108.1| 175|Apis mellifera complementary sex det... 21 9.2
DQ325093-1|ABD14107.1| 175|Apis mellifera complementary sex det... 21 9.2
DQ325092-1|ABD14106.1| 175|Apis mellifera complementary sex det... 21 9.2
DQ325091-1|ABD14105.1| 175|Apis mellifera complementary sex det... 21 9.2
AY569710-1|AAS86663.1| 408|Apis mellifera complementary sex det... 21 9.2
AY569709-1|AAS86662.1| 408|Apis mellifera complementary sex det... 21 9.2
AY569708-1|AAS86661.1| 408|Apis mellifera complementary sex det... 21 9.2
AY569707-1|AAS86660.1| 408|Apis mellifera complementary sex det... 21 9.2
AY569706-1|AAS86659.1| 397|Apis mellifera complementary sex det... 21 9.2
AB022907-1|BAA86908.1| 615|Apis mellifera glucose oxidase protein. 21 9.2
>AB264313-1|BAF43600.1| 900|Apis mellifera ecdysone-induced protein
75 protein.
Length = 900
Score = 23.0 bits (47), Expect = 2.3
Identities = 9/20 (45%), Positives = 14/20 (70%)
Frame = +1
Query: 361 EAGRCPPSAGLCSSTSTSTA 420
+A +CP +A L SST ++ A
Sbjct: 688 QASQCPQTASLLSSTHSTLA 707
>AY569716-1|AAS86669.1| 406|Apis mellifera complementary sex
determiner protein.
Length = 406
Score = 21.4 bits (43), Expect = 6.9
Identities = 8/26 (30%), Positives = 14/26 (53%)
Frame = +1
Query: 1 INNNFNYNKLHRKLDPRSTCRIKVER 78
++NN+NYN + P I +E+
Sbjct: 318 LSNNYNYNNYNNNYKPLYYNIINIEQ 343
>AF514804-1|AAM51823.1| 537|Apis mellifera neuronal nicotinic
acetylcholine receptoralpha-3 protein.
Length = 537
Score = 21.4 bits (43), Expect = 6.9
Identities = 12/39 (30%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Frame = -2
Query: 547 LTMVYES-DFYTTRRPYRSTYSVTTPRHYVVVDRDPIAP 434
L +++++ Y TR P S +PR+Y+ + D I+P
Sbjct: 498 LGIIFQAPSLYDTREPVDQQLSGISPRNYMYPNID-ISP 535
>DQ325094-1|ABD14108.1| 175|Apis mellifera complementary sex
determiner protein.
Length = 175
Score = 21.0 bits (42), Expect = 9.2
Identities = 6/16 (37%), Positives = 10/16 (62%)
Frame = +1
Query: 1 INNNFNYNKLHRKLDP 48
++NN+NYN + P
Sbjct: 85 LSNNYNYNNYNNNYKP 100
>DQ325093-1|ABD14107.1| 175|Apis mellifera complementary sex
determiner protein.
Length = 175
Score = 21.0 bits (42), Expect = 9.2
Identities = 6/16 (37%), Positives = 10/16 (62%)
Frame = +1
Query: 1 INNNFNYNKLHRKLDP 48
++NN+NYN + P
Sbjct: 85 LSNNYNYNNYNNNYKP 100
>DQ325092-1|ABD14106.1| 175|Apis mellifera complementary sex
determiner protein.
Length = 175
Score = 21.0 bits (42), Expect = 9.2
Identities = 6/16 (37%), Positives = 10/16 (62%)
Frame = +1
Query: 1 INNNFNYNKLHRKLDP 48
++NN+NYN + P
Sbjct: 85 LSNNYNYNNYNNNYKP 100
>DQ325091-1|ABD14105.1| 175|Apis mellifera complementary sex
determiner protein.
Length = 175
Score = 21.0 bits (42), Expect = 9.2
Identities = 6/16 (37%), Positives = 10/16 (62%)
Frame = +1
Query: 1 INNNFNYNKLHRKLDP 48
++NN+NYN + P
Sbjct: 85 LSNNYNYNNYNNNYKP 100
>AY569710-1|AAS86663.1| 408|Apis mellifera complementary sex
determiner protein.
Length = 408
Score = 21.0 bits (42), Expect = 9.2
Identities = 6/16 (37%), Positives = 10/16 (62%)
Frame = +1
Query: 1 INNNFNYNKLHRKLDP 48
++NN+NYN + P
Sbjct: 318 LSNNYNYNNYNNNYKP 333
>AY569709-1|AAS86662.1| 408|Apis mellifera complementary sex
determiner protein.
Length = 408
Score = 21.0 bits (42), Expect = 9.2
Identities = 6/16 (37%), Positives = 10/16 (62%)
Frame = +1
Query: 1 INNNFNYNKLHRKLDP 48
++NN+NYN + P
Sbjct: 318 LSNNYNYNNYNNNYKP 333
>AY569708-1|AAS86661.1| 408|Apis mellifera complementary sex
determiner protein.
Length = 408
Score = 21.0 bits (42), Expect = 9.2
Identities = 6/16 (37%), Positives = 10/16 (62%)
Frame = +1
Query: 1 INNNFNYNKLHRKLDP 48
++NN+NYN + P
Sbjct: 318 LSNNYNYNNYNNNYKP 333
>AY569707-1|AAS86660.1| 408|Apis mellifera complementary sex
determiner protein.
Length = 408
Score = 21.0 bits (42), Expect = 9.2
Identities = 6/16 (37%), Positives = 10/16 (62%)
Frame = +1
Query: 1 INNNFNYNKLHRKLDP 48
++NN+NYN + P
Sbjct: 318 LSNNYNYNNYNNNYKP 333
>AY569706-1|AAS86659.1| 397|Apis mellifera complementary sex
determiner protein.
Length = 397
Score = 21.0 bits (42), Expect = 9.2
Identities = 6/16 (37%), Positives = 10/16 (62%)
Frame = +1
Query: 1 INNNFNYNKLHRKLDP 48
++NN+NYN + P
Sbjct: 307 LSNNYNYNNYNNNYKP 322
>AB022907-1|BAA86908.1| 615|Apis mellifera glucose oxidase protein.
Length = 615
Score = 21.0 bits (42), Expect = 9.2
Identities = 8/28 (28%), Positives = 13/28 (46%)
Frame = +1
Query: 178 DAKRDKSSDGKWCRRAGGRCWWTSRSSL 261
D K +++ C GG C+W +L
Sbjct: 123 DWKYYTTNESHACLSTGGSCYWPRGKNL 150
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 120,633
Number of Sequences: 438
Number of extensions: 2408
Number of successful extensions: 14
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17482179
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -