Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte16f01
(877 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|ch... 451 e-128
SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha 2|Schizosacchar... 444 e-125
SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces... 198 8e-52
SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|... 112 7e-26
SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo... 28 1.5
SPACUNK4.08 |||dipeptidyl aminopeptidase |Schizosaccharomyces po... 27 3.5
SPBC11C11.04c |alp1||tubulin specific chaperone cofactor D |Schi... 27 3.5
SPAC4G9.08c |rpc2||DNA-directed RNA polymerase III complex subun... 26 8.1
>SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 455
Score = 451 bits (1111), Expect = e-128
Identities = 203/251 (80%), Positives = 226/251 (90%)
Frame = -3
Query: 875 LTTHTTLEHSDAAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRFDGAL 696
LTTH TL++SD FMVDNEA YDICRRNLDIERPTY NLNRLI Q+VSSITASLRF G+L
Sbjct: 193 LTTHATLDNSDCTFMVDNEACYDICRRNLDIERPTYENLNRLIAQVVSSITASLRFAGSL 252
Query: 695 NVDLTEFQTNLVPYPRIHFPLVTYAPVISAEKAYHEQLSVAEITNACFEPANQMVKCDPR 516
NVDL EFQTNLVPYPRIHFPLVTY+P++SA KA+HE SV EITN CFEP NQMVKCDPR
Sbjct: 253 NVDLNEFQTNLVPYPRIHFPLVTYSPIVSAAKAFHESNSVQEITNQCFEPYNQMVKCDPR 312
Query: 515 HGKYMACCMLYRGDVVPKDVNAAIGTIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDL 336
G+YMA C+LYRGDV+P+DV AA+ +IK++RTIQFVDWCPTGFK+GI Y+PP VPG +
Sbjct: 313 TGRYMATCLLYRGDVIPRDVQAAVTSIKSRRTIQFVDWCPTGFKIGICYEPPQHVPGSGI 372
Query: 335 AKVQRAVCMLSNTTAIAEAWSRLNHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAAL 156
AKV RAVCMLSNTT+IAEAWSRL+HKFDLMY+KRAFVHWYVGEGMEEGEFSEAREDLAAL
Sbjct: 373 AKVNRAVCMLSNTTSIAEAWSRLDHKFDLMYSKRAFVHWYVGEGMEEGEFSEAREDLAAL 432
Query: 155 EKDYEEVGMDS 123
E+DYEEVG DS
Sbjct: 433 ERDYEEVGQDS 443
>SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha
2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 449
Score = 444 bits (1093), Expect = e-125
Identities = 200/251 (79%), Positives = 224/251 (89%)
Frame = -3
Query: 875 LTTHTTLEHSDAAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRFDGAL 696
LTTH TL+ +D FMVDNE+ YDICRRNLDIERP+Y NLNRLI Q+VSSITASLRF+G+L
Sbjct: 189 LTTHATLDLADCTFMVDNESCYDICRRNLDIERPSYENLNRLIAQVVSSITASLRFEGSL 248
Query: 695 NVDLTEFQTNLVPYPRIHFPLVTYAPVISAEKAYHEQLSVAEITNACFEPANQMVKCDPR 516
NVDL EFQTNLVPYPRIHFPLVTYAP++SA KA+HE SV EITN CFEP NQMVKCDPR
Sbjct: 249 NVDLAEFQTNLVPYPRIHFPLVTYAPIVSAAKAFHESNSVQEITNQCFEPYNQMVKCDPR 308
Query: 515 HGKYMACCMLYRGDVVPKDVNAAIGTIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDL 336
G+YMA C+LYRGDV+P+DV AA+ TIK KRTIQFVDWCPTGFK+GI +PP + G ++
Sbjct: 309 AGRYMATCLLYRGDVIPRDVQAAVTTIKAKRTIQFVDWCPTGFKIGICDRPPQHIEGSEI 368
Query: 335 AKVQRAVCMLSNTTAIAEAWSRLNHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAAL 156
AKV RAVCMLSNTT+IAEAWSRL+HKFDLMY+KRAFVHWYVGEGMEEGEFSEAREDLAAL
Sbjct: 369 AKVDRAVCMLSNTTSIAEAWSRLDHKFDLMYSKRAFVHWYVGEGMEEGEFSEAREDLAAL 428
Query: 155 EKDYEEVGMDS 123
E+DYEEVG DS
Sbjct: 429 ERDYEEVGQDS 439
>SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 448
Score = 198 bits (483), Expect = 8e-52
Identities = 96/253 (37%), Positives = 150/253 (59%), Gaps = 3/253 (1%)
Frame = -3
Query: 875 LTTHTTLEHSDAAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRFDGAL 696
L+ H +E+SD F +DNEA+ I L I+ P+Y +LN L+ +++ +T S RF G L
Sbjct: 187 LSMHQLVENSDETFCIDNEALSSIFANTLKIKSPSYDDLNHLVSAVMAGVTTSFRFPGEL 246
Query: 695 NVDLTEFQTNLVPYPRIHFPLVTYAPVISAEKAYHEQLSVAEITNACFEPANQMVKCDPR 516
N DL + N+VP+PR+HF +V +AP+ + + + +SV E+T F+ N MV DPR
Sbjct: 247 NSDLRKLAVNMVPFPRLHFFMVGFAPLAAIGSSSFQAVSVPELTQQMFDANNMMVAADPR 306
Query: 515 HGKYMACCMLYRGDVVPKDVNAAIGTIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDL 336
HG+Y+ L+RG V K+V+ I +++TK + FV+W P + PP DL
Sbjct: 307 HGRYLTVAALFRGKVSMKEVDEQIRSVQTKNSAYFVEWIPDNVLKAVCSVPPK-----DL 361
Query: 335 AKVQRAVCMLSNTTAIAEAWSRLNHKFDLMYAKRAFVHWYVGEGMEEGEFSEAR---EDL 165
+ + + N+T+I E + RL +F M+ ++AF+HWY GEGM+E EF+EA DL
Sbjct: 362 ---KMSATFIGNSTSIQEIFRRLGDQFSAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDL 418
Query: 164 AALEKDYEEVGMD 126
+ + Y+E G+D
Sbjct: 419 VSEYQQYQEAGID 431
>SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 446
Score = 112 bits (269), Expect = 7e-26
Identities = 66/244 (27%), Positives = 125/244 (51%), Gaps = 7/244 (2%)
Frame = -3
Query: 851 HSDAAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQ 672
++D+ ++DN A+ I L + PT+ N+L+ ++S+ T +LR+ G +N DL
Sbjct: 198 NADSVVVLDNAALAHIAADRLHTQNPTFHQQNQLVSTVMSASTTTLRYPGYMNNDLVSII 257
Query: 671 TNLVPYPRIHFPLVTYAPVIS---AEKAYHEQLSVAEITNACFEPANQMVKCDP-RHGKY 504
+L+P PR HF L +Y P + E + +V ++ P NQMV +P + +
Sbjct: 258 ASLIPSPRCHFLLTSYTPFTNQQVEEAKAIRKTTVLDVMRRLLLPKNQMVSVNPSKKSCF 317
Query: 503 MACCMLYRGDVVPKDVNAAIGTIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQ 324
++ + +G+ P DV+ ++ I+ +R F+ W P +V ++ + P + ++ +
Sbjct: 318 ISILDIIQGEADPADVHKSLLRIRERRYASFIPWGPASIQVALSKKSPYIKTNHRVSGL- 376
Query: 323 RAVCMLSNTTAIAEAWSRLNHKFDLMYAKRAFVHWYVGEGMEE---GEFSEAREDLAALE 153
ML+N T+IA + R ++D + + AF+ Y E + E EF +R+ +A L
Sbjct: 377 ----MLANHTSIASLFKRTLDQYDRLRKRNAFLEQYKKEAIFEDDLNEFDSSRDVVADLI 432
Query: 152 KDYE 141
+YE
Sbjct: 433 NEYE 436
>SPCC18.03 |||shuttle craft like transcriptional
regulator|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1077
Score = 28.3 bits (60), Expect = 1.5
Identities = 14/42 (33%), Positives = 18/42 (42%)
Frame = -3
Query: 569 ITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAI 444
+ ACFEP N C H K C L + KD N ++
Sbjct: 361 LCGACFEPINAKCYCG-LHSKTYPCSSLPSPSISKKDENGSV 401
>SPACUNK4.08 |||dipeptidyl aminopeptidase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 793
Score = 27.1 bits (57), Expect = 3.5
Identities = 18/63 (28%), Positives = 26/63 (41%)
Frame = -3
Query: 509 KYMACCMLYRGDVVPKDVNAAIGTIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAK 330
++ + Y + KDVN +G TI +W PTG ++ Y V D
Sbjct: 142 RHSSFAQYYLYNTETKDVNM-LGQDNEHWTISLAEWSPTGHQLSFVYNNDLYVRKND-GN 199
Query: 329 VQR 321
VQR
Sbjct: 200 VQR 202
>SPBC11C11.04c |alp1||tubulin specific chaperone cofactor D
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1107
Score = 27.1 bits (57), Expect = 3.5
Identities = 7/16 (43%), Positives = 11/16 (68%)
Frame = -1
Query: 49 LRSRVCFSLWLFFHCY 2
+R C+ +W F+HCY
Sbjct: 429 IRDASCYFVWSFYHCY 444
>SPAC4G9.08c |rpc2||DNA-directed RNA polymerase III complex subunit
Rpc2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1165
Score = 25.8 bits (54), Expect = 8.1
Identities = 17/64 (26%), Positives = 29/64 (45%), Gaps = 1/64 (1%)
Frame = +3
Query: 276 PRLCYGSSIGQHAHGALHLRQISTRYHSWWLIVYPHLESCRAPVYKLNGAFRFD-GANGG 452
PR Y ++G+ A GA+ Q+ +L+VYP + +L G + G N
Sbjct: 710 PRNTYQCAMGKQAIGAIAYNQLQRIDTLLYLMVYPQQPMVKTKTIELIGYDKLPAGQNAT 769
Query: 453 IYIL 464
+ I+
Sbjct: 770 VAIM 773
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,690,195
Number of Sequences: 5004
Number of extensions: 80343
Number of successful extensions: 239
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 228
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 237
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 438479610
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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