Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte16e22
(772 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC27E2.10c |rfc3|SPAPJ698.01c|DNA replication factor C complex... 203 2e-53
SPAC23D3.02 |rfc2||DNA replication factor C complex subunit Rfc2... 135 8e-33
SPAC1687.03c |rfc4||DNA replication factor C complex subunit Rfc... 112 6e-26
SPBC83.14c |rfc5||DNA replication factor C complex subunit Rfc5 ... 68 1e-12
SPBC23E6.07c |rfc1||DNA replication factor C complex subunit Rfc... 38 0.002
SPBC902.02c |ctf18|chl12|DNA replication factor C complex subuni... 33 0.045
SPAC23D3.13c |||guanyl-nucleotide exchange factor|Schizosaccharo... 31 0.24
SPCC550.11 |||karyopherin|Schizosaccharomyces pombe|chr 3|||Manual 26 6.9
SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein Ubr1|Sc... 25 9.1
SPAC22G7.08 |ppk8||serine/threonine protein kinase Ppk8 |Schizos... 25 9.1
>SPAC27E2.10c |rfc3|SPAPJ698.01c|DNA replication factor C complex
subunit Rfc3 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 342
Score = 203 bits (496), Expect = 2e-53
Identities = 100/215 (46%), Positives = 140/215 (65%)
Frame = -2
Query: 735 LIILDEADAMTNDAQNALRRIIEKYTENVRFCIICNYLGKIIPALQSRCTRFRFAPLKQD 556
+IILDEADAMT AQNALRR+IEKYT+NVRFCIICNY+ KI PA+QSRCTRFRF PL
Sbjct: 123 MIILDEADAMTLAAQNALRRVIEKYTKNVRFCIICNYINKISPAIQSRCTRFRFQPLPPK 182
Query: 555 QIVPRLQEIVTTEGVKMSEGGMKALLTLSGGDMRKVLNTLQSTWLAYRDVTEDNVYTCVG 376
+I + ++ +E + A+L LS GDMRK LN LQ+ AY + +Y CVG
Sbjct: 183 EIEKTVDHVIQSEHCNIDPDAKMAVLRLSKGDMRKALNILQACHAAYDHIDVSAIYNCVG 242
Query: 375 HPLRADIDSILNWLLNENDFSACFKSIQDLKIAKGLALSDILAEVHTIIQRVKLPPEVLV 196
HP +DID L ++N+ +F F +I +K KGLAL DIL + + +++ P +
Sbjct: 243 HPHPSDIDYFLKSIMND-EFVIAFNTISSIKQQKGLALQDILTCIFEALDELEIKPNAKI 301
Query: 195 SLLIKMSDAEARLASGSSERVELAALIASFQIARD 91
+L +++ E R++ G SE+++L+A+IAS + D
Sbjct: 302 FILDQLATIEHRMSFGCSEKIQLSAMIASIKTGVD 336
>SPAC23D3.02 |rfc2||DNA replication factor C complex subunit
Rfc2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 340
Score = 135 bits (326), Expect = 8e-33
Identities = 77/215 (35%), Positives = 124/215 (57%), Gaps = 3/215 (1%)
Frame = -2
Query: 735 LIILDEADAMTNDAQNALRRIIEKYTENVRFCIICNYLGKIIPALQSRCTRFRFAPLKQD 556
+IILDEAD+MT DAQ ALRR +E Y RFC+ICNY+ +II L SRC+++RF PL +
Sbjct: 126 IIILDEADSMTQDAQAALRRTMESYARITRFCLICNYMTRIIDPLSSRCSKYRFKPLDNE 185
Query: 555 QIVPRLQEIVTTEGVKMSEGGMKALLTLSGGDMRKVLNTLQSTWLAYR--DVTEDNVYTC 382
+V RL+ I + V M G + AL+ SGGDMRK + LQS ++ +T +V
Sbjct: 186 NMVKRLEFIAADQAVSMEPGVVNALVECSGGDMRKAITFLQSAANLHQGTPITISSVEEL 245
Query: 381 VGHPLRADIDSILNWLLNENDFSACFKSIQDLKIAKGLALSDILAEVHTIIQRVK-LPPE 205
G I S+L+ +N + +++ A+G + IL+++H ++ + + L
Sbjct: 246 AGAVPYNIIRSLLDTAYTKN--VSNIETLSRDVAAEGYSTGIILSQLHDVLLKEETLSSP 303
Query: 204 VLVSLLIKMSDAEARLASGSSERVELAALIASFQI 100
V + +K+S+ + RL G+ E ++L L++S +
Sbjct: 304 VKYKIFMKLSEVDKRLNDGADETLQLLDLLSSISV 338
>SPAC1687.03c |rfc4||DNA replication factor C complex subunit
Rfc4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 342
Score = 112 bits (269), Expect = 6e-26
Identities = 67/219 (30%), Positives = 113/219 (51%), Gaps = 1/219 (0%)
Frame = -2
Query: 735 LIILDEADAMTNDAQNALRRIIEKYTENVRFCIICNYLGKIIPALQSRCTRFRFAPLKQD 556
+IILDEAD+MT AQ ALRR +E Y+ RF + CN KII +QSRC R++ L
Sbjct: 122 IIILDEADSMTAGAQQALRRTMEIYSNTTRFALACNQSNKIIEPIQSRCAILRYSRLTDQ 181
Query: 555 QIVPRLQEIVTTEGVKMSEGGMKALLTLSGGDMRKVLNTLQSTWLAYRDVTEDNVYTCVG 376
Q++ RL I E V ++ G+ AL+ + GDMR+ +N LQST + V +NV+
Sbjct: 182 QVLQRLLNICKAEKVNYTDDGLAALIMTAEGDMRQAVNNLQSTVAGFGLVNGENVFRVAD 241
Query: 375 HPLRADIDSILNWLLNENDFSACFKSIQDLKIAKGLALSDILAEVHTIIQRVKLPPEV-L 199
P I ++L + + +Q + G + DI+ + +++ + PE
Sbjct: 242 QPSPVAIHAMLT-ACQSGNIDVALEKLQGI-WDLGFSAVDIVTNMFRVVKTMDSIPEFSR 299
Query: 198 VSLLIKMSDAEARLASGSSERVELAALIASFQIARDQVK 82
+ +L ++ + G ++L+ L+ ++A+ Q+K
Sbjct: 300 LEMLKEIGQTHMIILEGVQTLLQLSGLVC--RLAKSQMK 336
>SPBC83.14c |rfc5||DNA replication factor C complex subunit Rfc5
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 358
Score = 68.1 bits (159), Expect = 1e-12
Identities = 34/113 (30%), Positives = 64/113 (56%)
Frame = -2
Query: 768 QQGLYLKQDLNLIILDEADAMTNDAQNALRRIIEKYTENVRFCIICNYLGKIIPALQSRC 589
Q L K+ +++++ AD +T DAQ ALRR +EKY+ N+R +I N KII ++SR
Sbjct: 119 QVDLQAKKIFKVVVINVADELTRDAQAALRRTMEKYSNNIRLILIANSTSKIIEPIRSRT 178
Query: 588 TRFRFAPLKQDQIVPRLQEIVTTEGVKMSEGGMKALLTLSGGDMRKVLNTLQS 430
R A ++I+ + +I+T +G++ + + + ++RK + L++
Sbjct: 179 LMVRVAAPTPEEIILVMSKILTAQGLEAPDSLLNNIANNCDRNLRKAILLLET 231
>SPBC23E6.07c |rfc1||DNA replication factor C complex subunit
Rfc1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 934
Score = 37.5 bits (83), Expect = 0.002
Identities = 32/119 (26%), Positives = 56/119 (47%), Gaps = 5/119 (4%)
Frame = -2
Query: 735 LIILDEADAMTNDAQNA---LRRIIEKYTENVRFCIICNYLG--KIIPALQSRCTRFRFA 571
++I+DE D M++ + L II+K + ICN K+ P L RF
Sbjct: 483 VLIMDEIDGMSSGDRGGVGQLNMIIKK--SMIPIICICNDRAHPKLRP-LDRTTFDLRFR 539
Query: 570 PLKQDQIVPRLQEIVTTEGVKMSEGGMKALLTLSGGDMRKVLNTLQSTWLAYRDVTEDN 394
+ + R+ I EG+K+S + L+ + DMR+++N L + L+ ++T N
Sbjct: 540 RPDANSMRSRIMSIAYREGLKLSPQAVDQLVQGTQSDMRQIINLLSTYKLSCSEMTPQN 598
>SPBC902.02c |ctf18|chl12|DNA replication factor C complex subunit
Ctf18|Schizosaccharomyces pombe|chr 2|||Manual
Length = 960
Score = 33.1 bits (72), Expect = 0.045
Identities = 29/124 (23%), Positives = 56/124 (45%), Gaps = 2/124 (1%)
Frame = -2
Query: 756 YLKQDLNLIILDEADAMTNDAQNALRRIIEKYTENVRFCI-ICNYL-GKIIPALQSRCTR 583
+++ L+L+ DE + A N+ ++ +K+ + R I ICN L + L+
Sbjct: 491 FVRALLSLLESDEKATEYSQAGNSKKK--KKFKKLCRPIICICNDLYTPALRPLRPYAQI 548
Query: 582 FRFAPLKQDQIVPRLQEIVTTEGVKMSEGGMKALLTLSGGDMRKVLNTLQSTWLAYRDVT 403
F P Q +V RL+ I E + + + L + D+R +N+LQ L + +
Sbjct: 549 IYFRPPPQASLVGRLRTICRNENIAVDSRSLTLLTDIYNSDIRSCINSLQLLSLNNKRID 608
Query: 402 EDNV 391
+ +
Sbjct: 609 SETI 612
>SPAC23D3.13c |||guanyl-nucleotide exchange factor|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1616
Score = 30.7 bits (66), Expect = 0.24
Identities = 24/88 (27%), Positives = 42/88 (47%), Gaps = 1/88 (1%)
Frame = -2
Query: 474 LSGGDMRKVLNTLQSTWLAYRDVTEDNV-YTCVGHPLRADIDSILNWLLNENDFSACFKS 298
L+ D L+ + + + R + + NV T VG L ++ L + + +DFS + S
Sbjct: 946 LASLDTSNYLDLMDTLLVFCRQLEDANVSLTAVG--LFWNVSDTLKNMFSTSDFSCAYNS 1003
Query: 297 IQDLKIAKGLALSDILAEVHTIIQRVKL 214
++DL + +IL EV I+ V L
Sbjct: 1004 VEDLYAFTSMKSKEILPEVLWIMLLVHL 1031
>SPCC550.11 |||karyopherin|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1029
Score = 25.8 bits (54), Expect = 6.9
Identities = 17/43 (39%), Positives = 22/43 (51%)
Frame = +2
Query: 257 SLSANPFAIFKSCMDLKQAEKSFSFSNQLSMLSISARRGWPTQ 385
+LSA+P K+ + LKQ EK SF + L S PTQ
Sbjct: 10 TLSADPNTRTKAELSLKQLEKEPSFVLAVLQLLSSQEISLPTQ 52
>SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein
Ubr1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1958
Score = 25.4 bits (53), Expect = 9.1
Identities = 17/71 (23%), Positives = 35/71 (49%)
Frame = -2
Query: 702 NDAQNALRRIIEKYTENVRFCIICNYLGKIIPALQSRCTRFRFAPLKQDQIVPRLQEIVT 523
+D+Q + I+++ E + FC G+++P+L S T+ + D++ P L +
Sbjct: 1556 HDSQKRIGGSIQEF-EFISFCQQKRIFGRLLPSLDSPVTK----SITDDRVEPLLVKDTF 1610
Query: 522 TEGVKMSEGGM 490
E + S G+
Sbjct: 1611 REFAEASVSGL 1621
>SPAC22G7.08 |ppk8||serine/threonine protein kinase Ppk8
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 513
Score = 25.4 bits (53), Expect = 9.1
Identities = 16/61 (26%), Positives = 30/61 (49%)
Frame = -2
Query: 258 DILAEVHTIIQRVKLPPEVLVSLLIKMSDAEARLASGSSERVELAALIASFQIARDQVKL 79
DI+ + HTI+Q ++ P L + + K + + + ++ A + S IA +KL
Sbjct: 308 DIIYKRHTILQIIEYVPYDLFTFITKGHCSALKADQMFFQLLDGVAYMHSLGIAHRDIKL 367
Query: 78 D 76
D
Sbjct: 368 D 368
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,909,416
Number of Sequences: 5004
Number of extensions: 57364
Number of successful extensions: 166
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 165
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 165
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 371330890
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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