Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte16e22
(772 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_0922 - 32742863-32742958,32743081-32743136,32743253-327433... 197 7e-51
12_01_0489 + 3872495-3872538,3872663-3872741,3872835-3872914,387... 124 8e-29
04_04_0840 + 28570642-28570809,28570919-28571025,28571137-285712... 121 7e-28
03_06_0267 - 32751431-32751489,32751600-32751645,32751886-327519... 65 7e-11
05_06_0166 + 26093618-26095381,26095820-26096039,26096345-260966... 55 7e-08
11_06_0143 + 20589574-20589684,20590256-20590873,20590943-205910... 48 6e-06
12_01_1073 + 11135853-11137388,11137627-11137846,11137990-111381... 47 1e-05
08_01_0139 + 1105857-1107008,1107124-1107328,1107583-1107768,110... 44 2e-04
04_03_0641 + 18261332-18262423 30 1.8
06_01_1087 + 8901950-8902102,8902960-8903996,8904438-8904586,890... 29 4.1
04_04_1542 - 34264994-34265331,34266195-34267029 29 4.1
04_04_0666 + 27086568-27086975,27087073-27087477,27088542-270886... 29 4.1
10_05_0004 + 7717748-7717798,7718107-7718317,7719424-7720079,772... 28 7.2
04_01_0226 + 2842897-2842921,2843049-2843155,2843426-2843494,285... 28 7.2
03_02_0326 + 7474352-7474448,7474913-7474977,7475105-7475191,747... 28 7.2
12_02_0953 - 24736642-24736673,24737104-24737188,24737267-247373... 28 9.5
>02_05_0922 -
32742863-32742958,32743081-32743136,32743253-32743382,
32743768-32743849,32744038-32744227,32744290-32744369,
32744769-32744985,32745740-32745923
Length = 344
Score = 197 bits (481), Expect = 7e-51
Identities = 100/189 (52%), Positives = 134/189 (70%), Gaps = 10/189 (5%)
Frame = -2
Query: 750 KQDLNLIILDEADAMTNDAQNALRR----------IIEKYTENVRFCIICNYLGKIIPAL 601
KQ + +++LDEADAMT DAQ ALRR +IEK+T + RF +ICN++ KIIPAL
Sbjct: 136 KQSVKMVLLDEADAMTKDAQFALRRATSSNLPHLTVIEKHTRSTRFALICNHVNKIIPAL 195
Query: 600 QSRCTRFRFAPLKQDQIVPRLQEIVTTEGVKMSEGGMKALLTLSGGDMRKVLNTLQSTWL 421
QSRCTRFRFAPL + RL+ I+ +EG+ + +GG+ AL+ LS GDMRK LN LQST +
Sbjct: 196 QSRCTRFRFAPLDGTHVRERLKHIIQSEGLDVDDGGLTALVRLSNGDMRKALNILQSTHM 255
Query: 420 AYRDVTEDNVYTCVGHPLRADIDSILNWLLNENDFSACFKSIQDLKIAKGLALSDILAEV 241
A + +TE+ VY C G+P+ DI+ I WLLNE+ FS FK I D+K+ KGLAL DI+ E+
Sbjct: 256 ASKQITEEAVYLCTGNPMPKDIEQIAYWLLNES-FSTSFKCISDMKMRKGLALVDIIREM 314
Query: 240 HTIIQRVKL 214
+ + R+KL
Sbjct: 315 PSDV-RIKL 322
>12_01_0489 +
3872495-3872538,3872663-3872741,3872835-3872914,
3873888-3874007,3874090-3874159,3874238-3874311,
3874393-3874513,3874600-3874662,3874748-3874807,
3875156-3875281,3875358-3875441,3875912-3876010
Length = 339
Score = 124 bits (299), Expect = 8e-29
Identities = 69/215 (32%), Positives = 112/215 (52%), Gaps = 1/215 (0%)
Frame = -2
Query: 768 QQGLYLKQDLNLIILDEADAMTNDAQNALRRIIEKYTENVRFCIICNYLGKIIPALQSRC 589
++G Y +IILDEAD+MT DAQNALRR +E Y++ RF ICNY+ +II L SRC
Sbjct: 106 RKGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRC 165
Query: 588 TRFRFAPLKQDQIVPRLQEIVTTEGVKMSEGGMKALLTLSGGDMRKVLNTLQSTWLAYRD 409
+FRF PL ++ + R+ I EG+ + + L T+S GD+R+ + LQS +
Sbjct: 166 AKFRFKPLSEEVMSNRILHICNEEGLSLDAQALATLSTISNGDLRRAITYLQSAARLFGS 225
Query: 408 VTEDNVYTCVGHPLRADIDSILNWLLNENDFSACFKSIQDLKIAKGLALSDILAE-VHTI 232
V + D+ L +F K + ++ IA G +S ++++ + I
Sbjct: 226 SISSTDLISVSGAIPEDVVKSLLASCKSGEFDVANKEVNNI-IADGYPVSQLISQFLDVI 284
Query: 231 IQRVKLPPEVLVSLLIKMSDAEARLASGSSERVEL 127
+ +P E + K+ +A+ L G+ E ++L
Sbjct: 285 VNADDIPDEQKARICKKLGEADKCLVDGADEYLQL 319
>04_04_0840 +
28570642-28570809,28570919-28571025,28571137-28571238,
28571786-28571981,28572691-28572819,28572869-28572895,
28572896-28573090,28573182-28573292
Length = 344
Score = 121 bits (291), Expect = 7e-28
Identities = 75/231 (32%), Positives = 123/231 (53%), Gaps = 13/231 (5%)
Frame = -2
Query: 735 LIILDEADAMTNDAQNALRRIIEKYTENVRFCIICNYLGKIIPALQSRCTRFRFAPLKQD 556
++ILDEAD+MT+ AQ ALRR +E Y+ RF + CN KII +QSRC RF+ L
Sbjct: 118 IVILDEADSMTSGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCAIVRFSRLSDQ 177
Query: 555 QIVPRLQEIVTTEGVKMSEGGMKALLTLSGGDMRKVLNTLQSTWLAYRDVTEDNVYTCV- 379
+I+ RL +V E V G++A++ + GDMR+ LN LQ+T +R V ++NV+ +
Sbjct: 178 EILGRLMIVVAAEKVPYVPEGLEAIIFTADGDMRQALNNLQATVSGFRFVNQENVFKLIV 237
Query: 378 ----------GHPLRADIDSILNWLLNENDFSAC--FKSIQDLKIAKGLALSDILAEVHT 235
HPL + +++ +L+ AC K + DL G + +DI+ +
Sbjct: 238 MLYWLQVCDQPHPLH--VKNMVKNVLDGKFDEACSALKQLYDL----GYSPTDIITTLFR 291
Query: 234 IIQRVKLPPEVLVSLLIKMSDAEARLASGSSERVELAALIASFQIARDQVK 82
+I+ + + + LL + A R+ G ++L+ L+A F + R+ K
Sbjct: 292 VIKNYDMAEYLKLELLKETGFAHMRICDGVGSFLQLSGLLAKFALVRETAK 342
>03_06_0267 -
32751431-32751489,32751600-32751645,32751886-32751960,
32752045-32752114,32752288-32752386,32752505-32752641,
32753040-32753221,32753314-32753482,32753824-32753856,
32753958-32754068,32754184-32754295,32755592-32755727,
32756264-32756291
Length = 418
Score = 64.9 bits (151), Expect = 7e-11
Identities = 31/102 (30%), Positives = 58/102 (56%)
Frame = -2
Query: 750 KQDLNLIILDEADAMTNDAQNALRRIIEKYTENVRFCIICNYLGKIIPALQSRCTRFRFA 571
K+ +++L+E D ++ +AQ++LRR +EKY+ + R + CN K+ A++SRC R
Sbjct: 192 KRAFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAVRSRCLNVRVN 251
Query: 570 PLKQDQIVPRLQEIVTTEGVKMSEGGMKALLTLSGGDMRKVL 445
+DQIV L+ I E +++ G + S ++R+ +
Sbjct: 252 APSEDQIVQVLEFIGKKENLQLPFGFAARIAAQSNRNLRRAI 293
>05_06_0166 +
26093618-26095381,26095820-26096039,26096345-26096674,
26097481-26098029,26098366-26098426,26099737-26099824,
26100240-26100299
Length = 1023
Score = 54.8 bits (126), Expect = 7e-08
Identities = 42/169 (24%), Positives = 83/169 (49%)
Frame = -2
Query: 735 LIILDEADAMTNDAQNALRRIIEKYTENVRFCIICNYLGKIIPALQSRCTRFRFAPLKQD 556
+ I+D+ + + D + + ++IE+ V F +I L + + SRC +F F LK+
Sbjct: 472 VFIVDDCNTLPPDTWSVISKVIERAPRRVVFILISPNLD-LPHIIVSRCQKFFFPKLKEC 530
Query: 555 QIVPRLQEIVTTEGVKMSEGGMKALLTLSGGDMRKVLNTLQSTWLAYRDVTEDNVYTCVG 376
IV LQ I T+EG+ + +K + + S G +R TL L + ++ V VG
Sbjct: 531 DIVNTLQWISTSEGLDVDRDALKLIASRSDGSLRDAEMTLDQLSLLGQRISMSLVQELVG 590
Query: 375 HPLRADIDSILNWLLNENDFSACFKSIQDLKIAKGLALSDILAEVHTII 229
+ +L+ L+ + + K+++D+ G+ +++++ TII
Sbjct: 591 LVSDDKLVDLLDLALSADTVNT-VKTLRDI-TETGVEPLALMSQLATII 637
>11_06_0143 +
20589574-20589684,20590256-20590873,20590943-20591010,
20591159-20591234,20591311-20591372,20591452-20591603,
20591889-20592052,20592129-20592317,20592417-20592538,
20592620-20592827,20593238-20593291,20593457-20593626,
20594265-20594355,20595405-20595529,20596372-20596444,
20596822-20596914,20597482-20597728,20598305-20598364,
20598461-20598590,20599008-20599014
Length = 939
Score = 48.4 bits (110), Expect = 6e-06
Identities = 33/123 (26%), Positives = 58/123 (47%), Gaps = 2/123 (1%)
Frame = -2
Query: 753 LKQDLNLIILDEADAMTNDAQNALRRIIE--KYTENVRFCIICNYLGKIIPALQSRCTRF 580
LK+ ++++DE D M+ + + +I K ++ CI + + + +L + C
Sbjct: 522 LKRPKAVLVMDEVDGMSAGDRGGVADLIASIKMSKIPIICICNDRYSQKLKSLVNYCLLL 581
Query: 579 RFAPLKQDQIVPRLQEIVTTEGVKMSEGGMKALLTLSGGDMRKVLNTLQSTWLAYRDVTE 400
F + Q+ RL EI EG++ E M+ L GD+R LN LQ L+ V
Sbjct: 582 NFRKPTKQQMGKRLMEIAKKEGLQAQENAMEELAERVHGDIRMALNHLQYMSLSQSVVKY 641
Query: 399 DNV 391
D++
Sbjct: 642 DDI 644
>12_01_1073 +
11135853-11137388,11137627-11137846,11137990-11138178,
11138257-11138457,11138547-11139246,11163479-11164106
Length = 1157
Score = 47.2 bits (107), Expect = 1e-05
Identities = 30/138 (21%), Positives = 63/138 (45%)
Frame = -2
Query: 735 LIILDEADAMTNDAQNALRRIIEKYTENVRFCIICNYLGKIIPALQSRCTRFRFAPLKQD 556
+ I+DE + DA +A+ + +++ + + +I + + + + C +F F +K
Sbjct: 395 VFIVDECHLLPEDAWSAILKSLDEPYRHAVYIMITSDIDSLPRTSITHCQKFHFPKIKVA 454
Query: 555 QIVPRLQEIVTTEGVKMSEGGMKALLTLSGGDMRKVLNTLQSTWLAYRDVTEDNVYTCVG 376
IV RL+ I EG++ G+ + S G +R L L + +T V+ VG
Sbjct: 455 DIVYRLERICIEEGLEFDHDGLYFISAKSNGSLRDAEIMLDQLSLLGKKITISLVHELVG 514
Query: 375 HPLRADIDSILNWLLNEN 322
++ +L+ L+ +
Sbjct: 515 SVSDDELIELLDLALSSD 532
>08_01_0139 +
1105857-1107008,1107124-1107328,1107583-1107768,
1107924-1108133,1108552-1109186
Length = 795
Score = 43.6 bits (98), Expect = 2e-04
Identities = 32/172 (18%), Positives = 77/172 (44%)
Frame = -2
Query: 735 LIILDEADAMTNDAQNALRRIIEKYTENVRFCIICNYLGKIIPALQSRCTRFRFAPLKQD 556
++I+D+ M + ++ +E ++ F +I + + K+ C +RF + +
Sbjct: 267 VLIVDDCQHMDKEGWYSVYSSLEGIPDSSIFVMITSDIDKLPSNSVGWCQSYRFCKVDEA 326
Query: 555 QIVPRLQEIVTTEGVKMSEGGMKALLTLSGGDMRKVLNTLQSTWLAYRDVTEDNVYTCVG 376
+I RL I EG++ ++ + + G +R + L L + +++ Y +G
Sbjct: 327 EIALRLSRICINEGMEFEAEALELIARKANGSIRDAVQMLDQLTLLGKRISKSVTYDLIG 386
Query: 375 HPLRADIDSILNWLLNENDFSACFKSIQDLKIAKGLALSDILAEVHTIIQRV 220
++ +LN L +D + + ++L +K L +LA++ +I +
Sbjct: 387 DVSDEELLDLLN-LAFSSDAATIVRRARELLSSKVDPL-QLLAQLANLIMDI 436
>04_03_0641 + 18261332-18262423
Length = 363
Score = 30.3 bits (65), Expect = 1.8
Identities = 13/43 (30%), Positives = 21/43 (48%)
Frame = -1
Query: 628 LPG*NYSSITVAVYAISFCPSQARSNCAEITRNCHNGRCKNVR 500
LP N +T+ Y CPS R +C ++ + CKN++
Sbjct: 41 LPHWNLQHLTIEYYLGQSCPSWLRPDCLKMLTSLKLSYCKNIQ 83
>06_01_1087 + 8901950-8902102,8902960-8903996,8904438-8904586,
8905437-8905690,8905785-8908799,8908889-8909001,
8909975-8910164,8910399-8910512,8910591-8910698,
8910941-8911073,8911206-8911408,8911626-8911826
Length = 1889
Score = 29.1 bits (62), Expect = 4.1
Identities = 15/46 (32%), Positives = 23/46 (50%)
Frame = -2
Query: 483 LLTLSGGDMRKVLNTLQSTWLAYRDVTEDNVYTCVGHPLRADIDSI 346
L L DMR L+ LQS W + + + N+ T V + ID++
Sbjct: 1256 LQQLYAPDMRDALDHLQSRWNSVQQANKQNMGTDVSEKSESSIDNL 1301
>04_04_1542 - 34264994-34265331,34266195-34267029
Length = 390
Score = 29.1 bits (62), Expect = 4.1
Identities = 19/51 (37%), Positives = 27/51 (52%)
Frame = -1
Query: 199 SVIAHKDVRR*SEVGERKQRAG*TCRAHRELPDR*GSSQTRHRSFVEKTLV 47
SV A +++ SE GE ++ +G A R R GSS R + V +TLV
Sbjct: 276 SVSAEEEMSGSSESGEEEEGSGGEPEAKRRRLSRLGSSVVRSATVVARTLV 326
>04_04_0666 +
27086568-27086975,27087073-27087477,27088542-27088635,
27088731-27088768,27088853-27088999,27089167-27089266,
27090001-27090953,27091512-27091569,27092904-27093022
Length = 773
Score = 29.1 bits (62), Expect = 4.1
Identities = 18/59 (30%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
Frame = -1
Query: 676 NYREVH-RECKVLHNMQLPG*NYSSITVAVYAISFCPSQARSNCAEITRNCHNGRCKNV 503
N R H R CKV H+ P S T+ + A ++C + A + E+ + H G K++
Sbjct: 234 NPRSGHGRSCKVFHDKAEPIFKVPSDTLIMQASTYCSALAGFH-MEVVKTTHAGHAKSL 291
>10_05_0004 +
7717748-7717798,7718107-7718317,7719424-7720079,
7721296-7721469,7721562-7721678,7722820-7722999,
7723244-7723290,7724068-7724401
Length = 589
Score = 28.3 bits (60), Expect = 7.2
Identities = 24/103 (23%), Positives = 43/103 (41%), Gaps = 2/103 (1%)
Frame = -2
Query: 729 ILDEADAMTNDAQNALRRIIEKYTENVRFCIICNYLGKIIPALQSRCTRFRFAPLKQDQI 550
+LDE + N A R++ ++ EN++ G+I+ LQ T + QI
Sbjct: 436 LLDEQEKEMNLAVEESRKLQKEAEENLKLKAFLVERGQIVDTLQGEMTVICEDVSQLKQI 495
Query: 549 VPRLQEIVTTEGVKMS--EGGMKALLTLSGGDMRKVLNTLQST 427
V + KMS +++ L SG + + ++ST
Sbjct: 496 VDERLSFCKLQRSKMSSLSSSLQSSLHKSGSSADRAIEAVEST 538
>04_01_0226 +
2842897-2842921,2843049-2843155,2843426-2843494,
2850676-2852745
Length = 756
Score = 28.3 bits (60), Expect = 7.2
Identities = 20/60 (33%), Positives = 27/60 (45%)
Frame = -2
Query: 567 LKQDQIVPRLQEIVTTEGVKMSEGGMKALLTLSGGDMRKVLNTLQSTWLAYRDVTEDNVY 388
LK + R EI V + EG + LL L+G RKVL W+AY+ +Y
Sbjct: 44 LKYTTVAGRSGEIARVTTVSLCEGVI--LLLLAGTRRRKVLVPKIILWIAYQLADSTAIY 101
>03_02_0326 +
7474352-7474448,7474913-7474977,7475105-7475191,
7475393-7475440,7476086-7476142,7476588-7476687,
7476875-7477185,7477298-7477667,7478745-7478876,
7479362-7479575,7479650-7479710,7480098-7480292
Length = 578
Score = 28.3 bits (60), Expect = 7.2
Identities = 15/51 (29%), Positives = 26/51 (50%)
Frame = -2
Query: 585 RFRFAPLKQDQIVPRLQEIVTTEGVKMSEGGMKALLTLSGGDMRKVLNTLQ 433
+ F P+ + I L I EG +++ + + T SGGD+R + +LQ
Sbjct: 255 KISFNPVTVNSIKKILVRICKQEGSDLTDDLVHQIATSSGGDIRHAIMSLQ 305
>12_02_0953 - 24736642-24736673,24737104-24737188,24737267-24737386,
24737484-24737549,24737629-24737799,24737901-24737999,
24738075-24738186,24738282-24738343,24738412-24738483,
24738583-24738681,24738764-24738997,24739104-24739178,
24739299-24739386,24739478-24739638,24739734-24739841,
24739934-24741922,24742007-24742279,24742957-24743295,
24743449-24745038,24745166-24745241,24745333-24745412,
24745614-24745679,24745761-24745830,24745899-24746134,
24746149-24746319,24746915-24747097,24747176-24747241,
24747326-24747389,24747472-24747530,24747612-24747699,
24747799-24747891,24747956-24748116,24748215-24748307,
24748405-24748518,24748654-24748773,24748852-24748935,
24749016-24749171,24749518-24750154,24752874-24752929
Length = 2815
Score = 27.9 bits (59), Expect = 9.5
Identities = 16/49 (32%), Positives = 25/49 (51%), Gaps = 2/49 (4%)
Frame = +2
Query: 287 KSCMDL--KQAEKSFSFSNQLSMLSISARRGWPTQV*TLSSVTSRYASH 427
++C++ K A + N+LS + S R G P V SS ++Y SH
Sbjct: 855 QACLEANKKLAREIADLQNELSNIHSSNREGHPNVVEKFSSALNQYDSH 903
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,489,410
Number of Sequences: 37544
Number of extensions: 359042
Number of successful extensions: 870
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 849
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 868
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2075009728
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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