Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte16e22
(772 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
L07540-1|AAB09784.1| 340|Homo sapiens replication factor C, 36-... 288 2e-77
BC013961-1|AAH13961.1| 340|Homo sapiens replication factor C (a... 288 2e-77
BC001866-1|AAH01866.1| 340|Homo sapiens replication factor C (a... 288 2e-77
AY254323-1|AAO63493.1| 340|Homo sapiens replication factor C (a... 288 2e-77
CR407651-1|CAG28579.1| 340|Homo sapiens RFC5 protein. 285 1e-76
AB208992-1|BAD92229.1| 351|Homo sapiens replication factor C 5 ... 279 6e-75
M87339-1|AAB09785.1| 363|Homo sapiens replication factor C, 37-... 124 4e-28
CR536561-1|CAG38798.1| 363|Homo sapiens RFC4 protein. 124 4e-28
BT006987-1|AAP35633.1| 363|Homo sapiens replication factor C (a... 124 4e-28
BC024022-1|AAH24022.1| 363|Homo sapiens replication factor C (a... 124 4e-28
BC017452-1|AAH17452.1| 363|Homo sapiens replication factor C (a... 124 4e-28
AF538718-1|AAM97933.1| 363|Homo sapiens replication factor C (a... 124 4e-28
M87338-1|AAB09786.1| 354|Homo sapiens replication factor C, 40-... 118 2e-26
AF045555-4|AAC04860.1| 354|Homo sapiens replication factor C su... 118 2e-26
AC005081-1|AAP22334.1| 354|Homo sapiens unknown protein. 118 2e-26
BT007058-1|AAP35707.1| 320|Homo sapiens replication factor C (a... 107 6e-23
BC002813-1|AAH02813.1| 320|Homo sapiens replication factor C (a... 107 6e-23
AF483622-1|AAL82503.1| 320|Homo sapiens replication factor C (a... 107 6e-23
AC005081-2|AAP22335.1| 320|Homo sapiens unknown protein. 107 6e-23
L07541-1|AAB07268.1| 356|Homo sapiens replication factor C, 38-... 66 1e-10
BT019668-1|AAV38474.1| 356|Homo sapiens replication factor C (a... 66 1e-10
BC000149-1|AAH00149.1| 356|Homo sapiens replication factor C (a... 66 1e-10
AL139081-1|CAH70947.1| 356|Homo sapiens replication factor C (a... 66 1e-10
AF484446-1|AAL82505.1| 356|Homo sapiens replication factor C (a... 66 1e-10
AK222572-1|BAD96292.1| 356|Homo sapiens replication factor C 3 ... 66 2e-10
Z22642-1|CAA80355.1| 1147|Homo sapiens PO-GA protein. 40 0.007
L23320-1|AAA16121.1| 1148|Homo sapiens replication factor C larg... 40 0.007
BC051786-1|AAH51786.1| 1148|Homo sapiens RFC1 protein protein. 40 0.007
BC051751-1|AAH51751.1| 1147|Homo sapiens replication factor C (a... 40 0.007
BC035297-1|AAH35297.1| 1148|Homo sapiens replication factor C (a... 40 0.007
AY600371-1|AAS94325.1| 1147|Homo sapiens replication factor C (a... 40 0.007
AF040250-1|AAB99788.1| 1147|Homo sapiens DNA binding protein pro... 40 0.007
BC018184-1|AAH18184.1| 975|Homo sapiens CTF18, chromosome trans... 40 0.013
BC006437-1|AAH06437.1| 1016|Homo sapiens CHTF18 protein protein. 40 0.013
BC006278-1|AAH06278.2| 975|Homo sapiens CTF18, chromosome trans... 40 0.013
AK024476-1|BAB15766.1| 579|Homo sapiens FLJ00069 protein protein. 40 0.013
AE006465-2|AAK61256.1| 1184|Homo sapiens some homology with holl... 31 3.5
M22299-1|AAB02844.1| 570|Homo sapiens T-plastin polypeptide pro... 31 4.6
BC150494-1|AAI50495.1| 150|Homo sapiens Unknown (protein for IM... 31 4.6
BC056898-1|AAH56898.1| 630|Homo sapiens plastin 3 (T isoform) p... 31 4.6
BC039049-1|AAH39049.1| 630|Homo sapiens plastin 3 (T isoform) p... 31 4.6
BC008588-1|AAH08588.1| 409|Homo sapiens Similar to plastin 3 (T... 31 4.6
AL589842-1|CAI39884.1| 627|Homo sapiens plastin 3 (T isoform) p... 31 4.6
AK222801-1|BAD96521.1| 630|Homo sapiens plastin 3 variant protein. 31 4.6
BC060759-1|AAH60759.1| 1359|Homo sapiens MED23 protein protein. 31 6.0
AL121575-7|CAB92072.1| 1368|Homo sapiens cofactor required for S... 31 6.0
AL121575-6|CAI23321.1| 1374|Homo sapiens cofactor required for S... 31 6.0
AL121575-5|CAI23320.1| 1364|Homo sapiens cofactor required for S... 31 6.0
AL121575-4|CAI23319.1| 1365|Homo sapiens cofactor required for S... 31 6.0
AF135022-1|AAD30202.1| 1364|Homo sapiens mediator protein. 31 6.0
AF105332-1|AAD31729.1| 1368|Homo sapiens vitamin D3 receptor int... 31 6.0
AB033042-1|BAA86530.1| 1421|Homo sapiens KIAA1216 protein protein. 31 6.0
>L07540-1|AAB09784.1| 340|Homo sapiens replication factor C, 36-kDa
subunit protein.
Length = 340
Score = 288 bits (706), Expect = 2e-77
Identities = 133/222 (59%), Positives = 174/222 (78%)
Frame = -2
Query: 750 KQDLNLIILDEADAMTNDAQNALRRIIEKYTENVRFCIICNYLGKIIPALQSRCTRFRFA 571
K+ L+ILDEADAMT DAQNALRR+IEK+TEN RFC+ICNYL KIIPALQSRCTRFRF
Sbjct: 116 KKGFKLVILDEADAMTQDAQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFG 175
Query: 570 PLKQDQIVPRLQEIVTTEGVKMSEGGMKALLTLSGGDMRKVLNTLQSTWLAYRDVTEDNV 391
PL + +VPRL+ +V E V +SE GMKAL+TLS GDMR+ LN LQST +A+ VTE+ V
Sbjct: 176 PLTPELMVPRLEHVVEEEKVDISEDGMKALVTLSSGDMRRALNILQSTNMAFGKVTEETV 235
Query: 390 YTCVGHPLRADIDSILNWLLNENDFSACFKSIQDLKIAKGLALSDILAEVHTIIQRVKLP 211
YTC GHPL++DI +IL+W+LN+ DF+ +++I +LK KGLAL DIL E+H + RV P
Sbjct: 236 YTCTGHPLKSDIANILDWMLNQ-DFTTAYRNITELKTLKGLALHDILTEIHLFVHRVDFP 294
Query: 210 PEVLVSLLIKMSDAEARLASGSSERVELAALIASFQIARDQV 85
V + LL KM+D E RL+ G++E+++L++LIA+FQ+ RD +
Sbjct: 295 SSVRIHLLTKMADIEYRLSVGTNEKIQLSSLIAAFQVTRDLI 336
>BC013961-1|AAH13961.1| 340|Homo sapiens replication factor C
(activator 1) 5, 36.5kDa protein.
Length = 340
Score = 288 bits (706), Expect = 2e-77
Identities = 133/222 (59%), Positives = 174/222 (78%)
Frame = -2
Query: 750 KQDLNLIILDEADAMTNDAQNALRRIIEKYTENVRFCIICNYLGKIIPALQSRCTRFRFA 571
K+ L+ILDEADAMT DAQNALRR+IEK+TEN RFC+ICNYL KIIPALQSRCTRFRF
Sbjct: 116 KKGFKLVILDEADAMTQDAQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFG 175
Query: 570 PLKQDQIVPRLQEIVTTEGVKMSEGGMKALLTLSGGDMRKVLNTLQSTWLAYRDVTEDNV 391
PL + +VPRL+ +V E V +SE GMKAL+TLS GDMR+ LN LQST +A+ VTE+ V
Sbjct: 176 PLTPELMVPRLEHVVEEEKVDISEDGMKALVTLSSGDMRRALNILQSTNMAFGKVTEETV 235
Query: 390 YTCVGHPLRADIDSILNWLLNENDFSACFKSIQDLKIAKGLALSDILAEVHTIIQRVKLP 211
YTC GHPL++DI +IL+W+LN+ DF+ +++I +LK KGLAL DIL E+H + RV P
Sbjct: 236 YTCTGHPLKSDIANILDWMLNQ-DFTTAYRNITELKTLKGLALHDILTEIHLFVHRVDFP 294
Query: 210 PEVLVSLLIKMSDAEARLASGSSERVELAALIASFQIARDQV 85
V + LL KM+D E RL+ G++E+++L++LIA+FQ+ RD +
Sbjct: 295 SSVRIHLLTKMADIEYRLSVGTNEKIQLSSLIAAFQVTRDLI 336
>BC001866-1|AAH01866.1| 340|Homo sapiens replication factor C
(activator 1) 5, 36.5kDa protein.
Length = 340
Score = 288 bits (706), Expect = 2e-77
Identities = 133/222 (59%), Positives = 174/222 (78%)
Frame = -2
Query: 750 KQDLNLIILDEADAMTNDAQNALRRIIEKYTENVRFCIICNYLGKIIPALQSRCTRFRFA 571
K+ L+ILDEADAMT DAQNALRR+IEK+TEN RFC+ICNYL KIIPALQSRCTRFRF
Sbjct: 116 KKGFKLVILDEADAMTQDAQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFG 175
Query: 570 PLKQDQIVPRLQEIVTTEGVKMSEGGMKALLTLSGGDMRKVLNTLQSTWLAYRDVTEDNV 391
PL + +VPRL+ +V E V +SE GMKAL+TLS GDMR+ LN LQST +A+ VTE+ V
Sbjct: 176 PLTPELMVPRLEHVVEEEKVDISEDGMKALVTLSSGDMRRALNILQSTNMAFGKVTEETV 235
Query: 390 YTCVGHPLRADIDSILNWLLNENDFSACFKSIQDLKIAKGLALSDILAEVHTIIQRVKLP 211
YTC GHPL++DI +IL+W+LN+ DF+ +++I +LK KGLAL DIL E+H + RV P
Sbjct: 236 YTCTGHPLKSDIANILDWMLNQ-DFTTAYRNITELKTLKGLALHDILTEIHLFVHRVDFP 294
Query: 210 PEVLVSLLIKMSDAEARLASGSSERVELAALIASFQIARDQV 85
V + LL KM+D E RL+ G++E+++L++LIA+FQ+ RD +
Sbjct: 295 SSVRIHLLTKMADIEYRLSVGTNEKIQLSSLIAAFQVTRDLI 336
>AY254323-1|AAO63493.1| 340|Homo sapiens replication factor C
(activator 1) 5, 36.5kDa protein.
Length = 340
Score = 288 bits (706), Expect = 2e-77
Identities = 133/222 (59%), Positives = 174/222 (78%)
Frame = -2
Query: 750 KQDLNLIILDEADAMTNDAQNALRRIIEKYTENVRFCIICNYLGKIIPALQSRCTRFRFA 571
K+ L+ILDEADAMT DAQNALRR+IEK+TEN RFC+ICNYL KIIPALQSRCTRFRF
Sbjct: 116 KKGFKLVILDEADAMTQDAQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFG 175
Query: 570 PLKQDQIVPRLQEIVTTEGVKMSEGGMKALLTLSGGDMRKVLNTLQSTWLAYRDVTEDNV 391
PL + +VPRL+ +V E V +SE GMKAL+TLS GDMR+ LN LQST +A+ VTE+ V
Sbjct: 176 PLTPELMVPRLEHVVEEEKVDISEDGMKALVTLSSGDMRRALNILQSTNMAFGKVTEETV 235
Query: 390 YTCVGHPLRADIDSILNWLLNENDFSACFKSIQDLKIAKGLALSDILAEVHTIIQRVKLP 211
YTC GHPL++DI +IL+W+LN+ DF+ +++I +LK KGLAL DIL E+H + RV P
Sbjct: 236 YTCTGHPLKSDIANILDWMLNQ-DFTTAYRNITELKTLKGLALHDILTEIHLFVHRVDFP 294
Query: 210 PEVLVSLLIKMSDAEARLASGSSERVELAALIASFQIARDQV 85
V + LL KM+D E RL+ G++E+++L++LIA+FQ+ RD +
Sbjct: 295 SSVRIHLLTKMADIEYRLSVGTNEKIQLSSLIAAFQVTRDLI 336
>CR407651-1|CAG28579.1| 340|Homo sapiens RFC5 protein.
Length = 340
Score = 285 bits (699), Expect = 1e-76
Identities = 132/222 (59%), Positives = 173/222 (77%)
Frame = -2
Query: 750 KQDLNLIILDEADAMTNDAQNALRRIIEKYTENVRFCIICNYLGKIIPALQSRCTRFRFA 571
K+ L+ILDEADAMT DAQNALR +IEK+TEN RFC+ICNYL KIIPALQSRCTRFRF
Sbjct: 116 KKGFKLVILDEADAMTQDAQNALRGVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFG 175
Query: 570 PLKQDQIVPRLQEIVTTEGVKMSEGGMKALLTLSGGDMRKVLNTLQSTWLAYRDVTEDNV 391
PL + +VPRL+ +V E V +SE GMKAL+TLS GDMR+ LN LQST +A+ VTE+ V
Sbjct: 176 PLTPELMVPRLEHVVEEEKVDISEDGMKALVTLSSGDMRRALNILQSTNMAFGKVTEETV 235
Query: 390 YTCVGHPLRADIDSILNWLLNENDFSACFKSIQDLKIAKGLALSDILAEVHTIIQRVKLP 211
YTC GHPL++DI +IL+W+LN+ DF+ +++I +LK KGLAL DIL E+H + RV P
Sbjct: 236 YTCTGHPLKSDIANILDWMLNQ-DFTTAYRNITELKTLKGLALHDILTEIHLFVHRVDFP 294
Query: 210 PEVLVSLLIKMSDAEARLASGSSERVELAALIASFQIARDQV 85
V + LL KM+D E RL+ G++E+++L++LIA+FQ+ RD +
Sbjct: 295 SSVRIHLLTKMADIEYRLSVGTNEKIQLSSLIAAFQVTRDLI 336
>AB208992-1|BAD92229.1| 351|Homo sapiens replication factor C 5
isoform 1 variant protein.
Length = 351
Score = 279 bits (685), Expect = 6e-75
Identities = 132/222 (59%), Positives = 171/222 (77%)
Frame = -2
Query: 750 KQDLNLIILDEADAMTNDAQNALRRIIEKYTENVRFCIICNYLGKIIPALQSRCTRFRFA 571
K+ L+ILDEADAMT DAQNALRR+IEK+TEN RFC+ICNYL KIIPALQSRCTRFRF
Sbjct: 130 KKGFKLVILDEADAMTQDAQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFG 189
Query: 570 PLKQDQIVPRLQEIVTTEGVKMSEGGMKALLTLSGGDMRKVLNTLQSTWLAYRDVTEDNV 391
PL + +VPRL+ +V E V +SE GMKAL+TLS GDMR+ LN LQST +A+ VTE+ V
Sbjct: 190 PLTPELMVPRLEHVVEEEKVDISEDGMKALVTLSSGDMRRALNILQSTNMAFGKVTEETV 249
Query: 390 YTCVGHPLRADIDSILNWLLNENDFSACFKSIQDLKIAKGLALSDILAEVHTIIQRVKLP 211
YTC GHPL++DI +IL+W+LN+ DF+ ++ LK KGLAL DIL E+H + RV P
Sbjct: 250 YTCTGHPLKSDIANILDWMLNQ-DFTTAYRK---LKTLKGLALHDILTEIHLFVHRVDFP 305
Query: 210 PEVLVSLLIKMSDAEARLASGSSERVELAALIASFQIARDQV 85
V + LL KM+D E RL+ G++E+++L++LIA+FQ+ RD +
Sbjct: 306 SSVRIHLLTKMADIEYRLSVGTNEKIQLSSLIAAFQVTRDLI 347
>M87339-1|AAB09785.1| 363|Homo sapiens replication factor C, 37-kDa
subunit protein.
Length = 363
Score = 124 bits (299), Expect = 4e-28
Identities = 72/211 (34%), Positives = 118/211 (55%), Gaps = 2/211 (0%)
Frame = -2
Query: 735 LIILDEADAMTNDAQNALRRIIEKYTENVRFCIICNYLGKIIPALQSRCTRFRFAPLKQD 556
++ILDEAD+MT+ AQ ALRR +EK ++ RFC+ICNY+ +II L SRC++FRF PL
Sbjct: 146 IVILDEADSMTSAAQAALRRTMEKESKTTRFCLICNYVSRIIEPLTSRCSKFRFKPLSDK 205
Query: 555 QIVPRLQEIVTTEGVKMSEGGMKALLTLSGGDMRKVLNTLQST--WLAYRDVTEDNVYTC 382
RL +I E VK+S+ G+ L+ +S GD+RK + LQS +++TE +
Sbjct: 206 IQQQRLLDIAKKENVKISDEGIAYLVKVSEGDLRKAITFLQSATRLTGGKEITEKVITDI 265
Query: 381 VGHPLRADIDSILNWLLNENDFSACFKSIQDLKIAKGLALSDILAEVHTIIQRVKLPPEV 202
G ID + F ++DL I +G A + ++ ++H ++ L +
Sbjct: 266 AGVIPAEKIDGVFA-ACQSGSFDKLEAVVKDL-IDEGHAATQLVNQLHDVVVENNLSDKQ 323
Query: 201 LVSLLIKMSDAEARLASGSSERVELAALIAS 109
+ K+++ + LA G+ E ++L +L A+
Sbjct: 324 KSIITEKLAEVDKCLADGADEHLQLISLCAT 354
>CR536561-1|CAG38798.1| 363|Homo sapiens RFC4 protein.
Length = 363
Score = 124 bits (299), Expect = 4e-28
Identities = 72/211 (34%), Positives = 118/211 (55%), Gaps = 2/211 (0%)
Frame = -2
Query: 735 LIILDEADAMTNDAQNALRRIIEKYTENVRFCIICNYLGKIIPALQSRCTRFRFAPLKQD 556
++ILDEAD+MT+ AQ ALRR +EK ++ RFC+ICNY+ +II L SRC++FRF PL
Sbjct: 146 IVILDEADSMTSAAQAALRRTMEKESKTTRFCLICNYVSRIIEPLTSRCSKFRFKPLSDK 205
Query: 555 QIVPRLQEIVTTEGVKMSEGGMKALLTLSGGDMRKVLNTLQST--WLAYRDVTEDNVYTC 382
RL +I E VK+S+ G+ L+ +S GD+RK + LQS +++TE +
Sbjct: 206 IQQQRLLDIAKKENVKISDEGIAYLVKVSEGDLRKAITFLQSATRLTGGKEITEKVITDI 265
Query: 381 VGHPLRADIDSILNWLLNENDFSACFKSIQDLKIAKGLALSDILAEVHTIIQRVKLPPEV 202
G ID + F ++DL I +G A + ++ ++H ++ L +
Sbjct: 266 AGVIPAEKIDGVFA-ACQSGSFDKLEAVVKDL-IDEGHAATQLVNQLHDVVVENNLSDKQ 323
Query: 201 LVSLLIKMSDAEARLASGSSERVELAALIAS 109
+ K+++ + LA G+ E ++L +L A+
Sbjct: 324 KSIITEKLAEVDKCLADGADEHLQLISLCAT 354
>BT006987-1|AAP35633.1| 363|Homo sapiens replication factor C
(activator 1) 4, 37kDa protein.
Length = 363
Score = 124 bits (299), Expect = 4e-28
Identities = 72/211 (34%), Positives = 118/211 (55%), Gaps = 2/211 (0%)
Frame = -2
Query: 735 LIILDEADAMTNDAQNALRRIIEKYTENVRFCIICNYLGKIIPALQSRCTRFRFAPLKQD 556
++ILDEAD+MT+ AQ ALRR +EK ++ RFC+ICNY+ +II L SRC++FRF PL
Sbjct: 146 IVILDEADSMTSAAQAALRRTMEKESKTTRFCLICNYVSRIIEPLTSRCSKFRFKPLSDK 205
Query: 555 QIVPRLQEIVTTEGVKMSEGGMKALLTLSGGDMRKVLNTLQST--WLAYRDVTEDNVYTC 382
RL +I E VK+S+ G+ L+ +S GD+RK + LQS +++TE +
Sbjct: 206 IQQQRLLDIAKKENVKISDEGIAYLVKVSEGDLRKAITFLQSATRLTGGKEITEKVITDI 265
Query: 381 VGHPLRADIDSILNWLLNENDFSACFKSIQDLKIAKGLALSDILAEVHTIIQRVKLPPEV 202
G ID + F ++DL I +G A + ++ ++H ++ L +
Sbjct: 266 AGVIPAEKIDGVFA-ACQSGSFDKLEAVVKDL-IDEGHAATQLVNQLHDVVVENNLSDKQ 323
Query: 201 LVSLLIKMSDAEARLASGSSERVELAALIAS 109
+ K+++ + LA G+ E ++L +L A+
Sbjct: 324 KSIITEKLAEVDKCLADGADEHLQLISLCAT 354
>BC024022-1|AAH24022.1| 363|Homo sapiens replication factor C
(activator 1) 4, 37kDa protein.
Length = 363
Score = 124 bits (299), Expect = 4e-28
Identities = 72/211 (34%), Positives = 118/211 (55%), Gaps = 2/211 (0%)
Frame = -2
Query: 735 LIILDEADAMTNDAQNALRRIIEKYTENVRFCIICNYLGKIIPALQSRCTRFRFAPLKQD 556
++ILDEAD+MT+ AQ ALRR +EK ++ RFC+ICNY+ +II L SRC++FRF PL
Sbjct: 146 IVILDEADSMTSAAQAALRRTMEKESKTTRFCLICNYVSRIIEPLTSRCSKFRFKPLSDK 205
Query: 555 QIVPRLQEIVTTEGVKMSEGGMKALLTLSGGDMRKVLNTLQST--WLAYRDVTEDNVYTC 382
RL +I E VK+S+ G+ L+ +S GD+RK + LQS +++TE +
Sbjct: 206 IQQQRLLDIAKKENVKISDEGIAYLVKVSEGDLRKAITFLQSATRLTGGKEITEKVITDI 265
Query: 381 VGHPLRADIDSILNWLLNENDFSACFKSIQDLKIAKGLALSDILAEVHTIIQRVKLPPEV 202
G ID + F ++DL I +G A + ++ ++H ++ L +
Sbjct: 266 AGVIPAEKIDGVFA-ACQSGSFDKLEAVVKDL-IDEGHAATQLVNQLHDVVVENNLSDKQ 323
Query: 201 LVSLLIKMSDAEARLASGSSERVELAALIAS 109
+ K+++ + LA G+ E ++L +L A+
Sbjct: 324 KSIITEKLAEVDKCLADGADEHLQLISLCAT 354
>BC017452-1|AAH17452.1| 363|Homo sapiens replication factor C
(activator 1) 4, 37kDa protein.
Length = 363
Score = 124 bits (299), Expect = 4e-28
Identities = 72/211 (34%), Positives = 118/211 (55%), Gaps = 2/211 (0%)
Frame = -2
Query: 735 LIILDEADAMTNDAQNALRRIIEKYTENVRFCIICNYLGKIIPALQSRCTRFRFAPLKQD 556
++ILDEAD+MT+ AQ ALRR +EK ++ RFC+ICNY+ +II L SRC++FRF PL
Sbjct: 146 IVILDEADSMTSAAQAALRRTMEKESKTTRFCLICNYVSRIIEPLTSRCSKFRFKPLSDK 205
Query: 555 QIVPRLQEIVTTEGVKMSEGGMKALLTLSGGDMRKVLNTLQST--WLAYRDVTEDNVYTC 382
RL +I E VK+S+ G+ L+ +S GD+RK + LQS +++TE +
Sbjct: 206 IQQQRLLDIAKKENVKISDEGIAYLVKVSEGDLRKAITFLQSATRLTGGKEITEKVITDI 265
Query: 381 VGHPLRADIDSILNWLLNENDFSACFKSIQDLKIAKGLALSDILAEVHTIIQRVKLPPEV 202
G ID + F ++DL I +G A + ++ ++H ++ L +
Sbjct: 266 AGVIPAEKIDGVFA-ACQSGSFDKLEAVVKDL-IDEGHAATQLVNQLHDVVVENNLSDKQ 323
Query: 201 LVSLLIKMSDAEARLASGSSERVELAALIAS 109
+ K+++ + LA G+ E ++L +L A+
Sbjct: 324 KSIITEKLAEVDKCLADGADEHLQLISLCAT 354
>AF538718-1|AAM97933.1| 363|Homo sapiens replication factor C
(activator 1) 4 (37kD) protein.
Length = 363
Score = 124 bits (299), Expect = 4e-28
Identities = 72/211 (34%), Positives = 118/211 (55%), Gaps = 2/211 (0%)
Frame = -2
Query: 735 LIILDEADAMTNDAQNALRRIIEKYTENVRFCIICNYLGKIIPALQSRCTRFRFAPLKQD 556
++ILDEAD+MT+ AQ ALRR +EK ++ RFC+ICNY+ +II L SRC++FRF PL
Sbjct: 146 IVILDEADSMTSAAQAALRRTMEKESKTTRFCLICNYVSRIIEPLTSRCSKFRFKPLSDK 205
Query: 555 QIVPRLQEIVTTEGVKMSEGGMKALLTLSGGDMRKVLNTLQST--WLAYRDVTEDNVYTC 382
RL +I E VK+S+ G+ L+ +S GD+RK + LQS +++TE +
Sbjct: 206 IQQQRLLDIAKKENVKISDEGIAYLVKVSEGDLRKAITFLQSATRLTGGKEITEKVITDI 265
Query: 381 VGHPLRADIDSILNWLLNENDFSACFKSIQDLKIAKGLALSDILAEVHTIIQRVKLPPEV 202
G ID + F ++DL I +G A + ++ ++H ++ L +
Sbjct: 266 AGVIPAEKIDGVFA-ACQSGSFDKLEAVVKDL-IDEGHAATQLVNQLHDVVVENNLSDKQ 323
Query: 201 LVSLLIKMSDAEARLASGSSERVELAALIAS 109
+ K+++ + LA G+ E ++L +L A+
Sbjct: 324 KSIITEKLAEVDKCLADGADEHLQLISLCAT 354
>M87338-1|AAB09786.1| 354|Homo sapiens replication factor C, 40-kDa
subunit protein.
Length = 354
Score = 118 bits (285), Expect = 2e-26
Identities = 63/208 (30%), Positives = 113/208 (54%)
Frame = -2
Query: 735 LIILDEADAMTNDAQNALRRIIEKYTENVRFCIICNYLGKIIPALQSRCTRFRFAPLKQD 556
+IILDEAD+MT+ AQ ALRR +E Y++ RF + CN KII +QSRC R+ L
Sbjct: 137 IIILDEADSMTDGAQQALRRTMEIYSKTTRFALACNASDKIIEPIQSRCAVLRYTKLTDA 196
Query: 555 QIVPRLQEIVTTEGVKMSEGGMKALLTLSGGDMRKVLNTLQSTWLAYRDVTEDNVYTCVG 376
QI+ RL ++ E V ++ G++A++ + GDMR+ LN LQST+ + + +NV+
Sbjct: 197 QILTRLMNVIEKERVPYTDDGLEAIIFTAQGDMRQALNNLQSTFSGFGFINSENVFKVCD 256
Query: 375 HPLRADIDSILNWLLNENDFSACFKSIQDLKIAKGLALSDILAEVHTIIQRVKLPPEVLV 196
P + ++ +N N +K + L G + DI+ + + + ++ + +
Sbjct: 257 EPHPLLVKEMIQHCVNAN-IDEAYKILAHL-WHLGYSPEDIIGNIFRVCKTFQMAEYLKL 314
Query: 195 SLLIKMSDAEARLASGSSERVELAALIA 112
+ ++ ++A G + +++A L+A
Sbjct: 315 EFIKEIGYTHMKIAEGVNSLLQMAGLLA 342
>AF045555-4|AAC04860.1| 354|Homo sapiens replication factor C
subunit 2 protein.
Length = 354
Score = 118 bits (285), Expect = 2e-26
Identities = 63/208 (30%), Positives = 113/208 (54%)
Frame = -2
Query: 735 LIILDEADAMTNDAQNALRRIIEKYTENVRFCIICNYLGKIIPALQSRCTRFRFAPLKQD 556
+IILDEAD+MT+ AQ ALRR +E Y++ RF + CN KII +QSRC R+ L
Sbjct: 137 IIILDEADSMTDGAQQALRRTMEIYSKTTRFALACNASDKIIEPIQSRCAVLRYTKLTDA 196
Query: 555 QIVPRLQEIVTTEGVKMSEGGMKALLTLSGGDMRKVLNTLQSTWLAYRDVTEDNVYTCVG 376
QI+ RL ++ E V ++ G++A++ + GDMR+ LN LQST+ + + +NV+
Sbjct: 197 QILTRLMNVIEKERVPYTDDGLEAIIFTAQGDMRQALNNLQSTFSGFGFINSENVFKVCD 256
Query: 375 HPLRADIDSILNWLLNENDFSACFKSIQDLKIAKGLALSDILAEVHTIIQRVKLPPEVLV 196
P + ++ +N N +K + L G + DI+ + + + ++ + +
Sbjct: 257 EPHPLLVKEMIQHCVNAN-IDEAYKILAHL-WHLGYSPEDIIGNIFRVCKTFQMAEYLKL 314
Query: 195 SLLIKMSDAEARLASGSSERVELAALIA 112
+ ++ ++A G + +++A L+A
Sbjct: 315 EFIKEIGYTHMKIAEGVNSLLQMAGLLA 342
>AC005081-1|AAP22334.1| 354|Homo sapiens unknown protein.
Length = 354
Score = 118 bits (285), Expect = 2e-26
Identities = 63/208 (30%), Positives = 113/208 (54%)
Frame = -2
Query: 735 LIILDEADAMTNDAQNALRRIIEKYTENVRFCIICNYLGKIIPALQSRCTRFRFAPLKQD 556
+IILDEAD+MT+ AQ ALRR +E Y++ RF + CN KII +QSRC R+ L
Sbjct: 137 IIILDEADSMTDGAQQALRRTMEIYSKTTRFALACNASDKIIEPIQSRCAVLRYTKLTDA 196
Query: 555 QIVPRLQEIVTTEGVKMSEGGMKALLTLSGGDMRKVLNTLQSTWLAYRDVTEDNVYTCVG 376
QI+ RL ++ E V ++ G++A++ + GDMR+ LN LQST+ + + +NV+
Sbjct: 197 QILTRLMNVIEKERVPYTDDGLEAIIFTAQGDMRQALNNLQSTFSGFGFINSENVFKVCD 256
Query: 375 HPLRADIDSILNWLLNENDFSACFKSIQDLKIAKGLALSDILAEVHTIIQRVKLPPEVLV 196
P + ++ +N N +K + L G + DI+ + + + ++ + +
Sbjct: 257 EPHPLLVKEMIQHCVNAN-IDEAYKILAHL-WHLGYSPEDIIGNIFRVCKTFQMAEYLKL 314
Query: 195 SLLIKMSDAEARLASGSSERVELAALIA 112
+ ++ ++A G + +++A L+A
Sbjct: 315 EFIKEIGYTHMKIAEGVNSLLQMAGLLA 342
>BT007058-1|AAP35707.1| 320|Homo sapiens replication factor C
(activator 1) 2, 40kDa protein.
Length = 320
Score = 107 bits (256), Expect = 6e-23
Identities = 57/201 (28%), Positives = 106/201 (52%)
Frame = -2
Query: 714 DAMTNDAQNALRRIIEKYTENVRFCIICNYLGKIIPALQSRCTRFRFAPLKQDQIVPRLQ 535
D+MT+ AQ ALRR +E Y++ RF + CN KII +QSRC R+ L QI+ RL
Sbjct: 110 DSMTDGAQQALRRTMEIYSKTTRFALACNASDKIIEPIQSRCAVLRYTKLTDAQILTRLM 169
Query: 534 EIVTTEGVKMSEGGMKALLTLSGGDMRKVLNTLQSTWLAYRDVTEDNVYTCVGHPLRADI 355
++ E V ++ G++A++ + GDMR+ LN LQST+ + + +NV+ P +
Sbjct: 170 NVIEKERVPYTDDGLEAIIFTAQGDMRQALNNLQSTFSGFGFINSENVFKVCDEPHPLLV 229
Query: 354 DSILNWLLNENDFSACFKSIQDLKIAKGLALSDILAEVHTIIQRVKLPPEVLVSLLIKMS 175
++ +N N +K + L G + DI+ + + + ++ + + + ++
Sbjct: 230 KEMIQHCVNAN-IDEAYKILAHL-WHLGYSPEDIIGNIFRVCKTFQMAEYLKLEFIKEIG 287
Query: 174 DAEARLASGSSERVELAALIA 112
++A G + +++A L+A
Sbjct: 288 YTHMKIAEGVNSLLQMAGLLA 308
>BC002813-1|AAH02813.1| 320|Homo sapiens replication factor C
(activator 1) 2, 40kDa protein.
Length = 320
Score = 107 bits (256), Expect = 6e-23
Identities = 57/201 (28%), Positives = 106/201 (52%)
Frame = -2
Query: 714 DAMTNDAQNALRRIIEKYTENVRFCIICNYLGKIIPALQSRCTRFRFAPLKQDQIVPRLQ 535
D+MT+ AQ ALRR +E Y++ RF + CN KII +QSRC R+ L QI+ RL
Sbjct: 110 DSMTDGAQQALRRTMEIYSKTTRFALACNASDKIIEPIQSRCAVLRYTKLTDAQILTRLM 169
Query: 534 EIVTTEGVKMSEGGMKALLTLSGGDMRKVLNTLQSTWLAYRDVTEDNVYTCVGHPLRADI 355
++ E V ++ G++A++ + GDMR+ LN LQST+ + + +NV+ P +
Sbjct: 170 NVIEKERVPYTDDGLEAIIFTAQGDMRQALNNLQSTFSGFGFINSENVFKVCDEPHPLLV 229
Query: 354 DSILNWLLNENDFSACFKSIQDLKIAKGLALSDILAEVHTIIQRVKLPPEVLVSLLIKMS 175
++ +N N +K + L G + DI+ + + + ++ + + + ++
Sbjct: 230 KEMIQHCVNAN-IDEAYKILAHL-WHLGYSPEDIIGNIFRVCKTFQMAEYLKLEFIKEIG 287
Query: 174 DAEARLASGSSERVELAALIA 112
++A G + +++A L+A
Sbjct: 288 YTHMKIAEGVNSLLQMAGLLA 308
>AF483622-1|AAL82503.1| 320|Homo sapiens replication factor C
(activator 1) 2 (40kD) protein.
Length = 320
Score = 107 bits (256), Expect = 6e-23
Identities = 57/201 (28%), Positives = 106/201 (52%)
Frame = -2
Query: 714 DAMTNDAQNALRRIIEKYTENVRFCIICNYLGKIIPALQSRCTRFRFAPLKQDQIVPRLQ 535
D+MT+ AQ ALRR +E Y++ RF + CN KII +QSRC R+ L QI+ RL
Sbjct: 110 DSMTDGAQQALRRTMEIYSKTTRFALACNASDKIIEPIQSRCAVLRYTKLTDAQILTRLM 169
Query: 534 EIVTTEGVKMSEGGMKALLTLSGGDMRKVLNTLQSTWLAYRDVTEDNVYTCVGHPLRADI 355
++ E V ++ G++A++ + GDMR+ LN LQST+ + + +NV+ P +
Sbjct: 170 NVIEKERVPYTDDGLEAIIFTAQGDMRQALNNLQSTFSGFGFINSENVFKVCDEPHPLLV 229
Query: 354 DSILNWLLNENDFSACFKSIQDLKIAKGLALSDILAEVHTIIQRVKLPPEVLVSLLIKMS 175
++ +N N +K + L G + DI+ + + + ++ + + + ++
Sbjct: 230 KEMIQHCVNAN-IDEAYKILAHL-WHLGYSPEDIIGNIFRVCKTFQMAEYLKLEFIKEIG 287
Query: 174 DAEARLASGSSERVELAALIA 112
++A G + +++A L+A
Sbjct: 288 YTHMKIAEGVNSLLQMAGLLA 308
>AC005081-2|AAP22335.1| 320|Homo sapiens unknown protein.
Length = 320
Score = 107 bits (256), Expect = 6e-23
Identities = 57/201 (28%), Positives = 106/201 (52%)
Frame = -2
Query: 714 DAMTNDAQNALRRIIEKYTENVRFCIICNYLGKIIPALQSRCTRFRFAPLKQDQIVPRLQ 535
D+MT+ AQ ALRR +E Y++ RF + CN KII +QSRC R+ L QI+ RL
Sbjct: 110 DSMTDGAQQALRRTMEIYSKTTRFALACNASDKIIEPIQSRCAVLRYTKLTDAQILTRLM 169
Query: 534 EIVTTEGVKMSEGGMKALLTLSGGDMRKVLNTLQSTWLAYRDVTEDNVYTCVGHPLRADI 355
++ E V ++ G++A++ + GDMR+ LN LQST+ + + +NV+ P +
Sbjct: 170 NVIEKERVPYTDDGLEAIIFTAQGDMRQALNNLQSTFSGFGFINSENVFKVCDEPHPLLV 229
Query: 354 DSILNWLLNENDFSACFKSIQDLKIAKGLALSDILAEVHTIIQRVKLPPEVLVSLLIKMS 175
++ +N N +K + L G + DI+ + + + ++ + + + ++
Sbjct: 230 KEMIQHCVNAN-IDEAYKILAHL-WHLGYSPEDIIGNIFRVCKTFQMAEYLKLEFIKEIG 287
Query: 174 DAEARLASGSSERVELAALIA 112
++A G + +++A L+A
Sbjct: 288 YTHMKIAEGVNSLLQMAGLLA 308
>L07541-1|AAB07268.1| 356|Homo sapiens replication factor C, 38-kDa
subunit protein.
Length = 356
Score = 66.5 bits (155), Expect = 1e-10
Identities = 34/102 (33%), Positives = 52/102 (50%)
Frame = -2
Query: 750 KQDLNLIILDEADAMTNDAQNALRRIIEKYTENVRFCIICNYLGKIIPALQSRCTRFRFA 571
++D +++L E D +T DAQ+ALRR +EKY R + CN K+IP ++SRC R
Sbjct: 126 QRDFKVVLLTEVDKLTKDAQHALRRTMEKYMSTCRLILCCNSTSKVIPPIRSRCLAVRVP 185
Query: 570 PLKQDQIVPRLQEIVTTEGVKMSEGGMKALLTLSGGDMRKVL 445
+ I L + EG+ + L S ++RK L
Sbjct: 186 APSIEDICHVLSTVCKKEGLNLPSQLAHRLAEKSCRNLRKAL 227
>BT019668-1|AAV38474.1| 356|Homo sapiens replication factor C
(activator 1) 3, 38kDa protein.
Length = 356
Score = 66.5 bits (155), Expect = 1e-10
Identities = 34/102 (33%), Positives = 52/102 (50%)
Frame = -2
Query: 750 KQDLNLIILDEADAMTNDAQNALRRIIEKYTENVRFCIICNYLGKIIPALQSRCTRFRFA 571
++D +++L E D +T DAQ+ALRR +EKY R + CN K+IP ++SRC R
Sbjct: 126 QRDFKVVLLTEVDKLTKDAQHALRRTMEKYMSTCRLILCCNSTSKVIPPIRSRCLAVRVP 185
Query: 570 PLKQDQIVPRLQEIVTTEGVKMSEGGMKALLTLSGGDMRKVL 445
+ I L + EG+ + L S ++RK L
Sbjct: 186 APSIEDICHVLSTVCKKEGLNLPSQLAHRLAEKSCRNLRKAL 227
>BC000149-1|AAH00149.1| 356|Homo sapiens replication factor C
(activator 1) 3, 38kDa protein.
Length = 356
Score = 66.5 bits (155), Expect = 1e-10
Identities = 34/102 (33%), Positives = 52/102 (50%)
Frame = -2
Query: 750 KQDLNLIILDEADAMTNDAQNALRRIIEKYTENVRFCIICNYLGKIIPALQSRCTRFRFA 571
++D +++L E D +T DAQ+ALRR +EKY R + CN K+IP ++SRC R
Sbjct: 126 QRDFKVVLLTEVDKLTKDAQHALRRTMEKYMSTCRLILCCNSTSKVIPPIRSRCLAVRVP 185
Query: 570 PLKQDQIVPRLQEIVTTEGVKMSEGGMKALLTLSGGDMRKVL 445
+ I L + EG+ + L S ++RK L
Sbjct: 186 APSIEDICHVLSTVCKKEGLNLPSQLAHRLAEKSCRNLRKAL 227
>AL139081-1|CAH70947.1| 356|Homo sapiens replication factor C
(activator 1) 3, 38kDa protein.
Length = 356
Score = 66.5 bits (155), Expect = 1e-10
Identities = 34/102 (33%), Positives = 52/102 (50%)
Frame = -2
Query: 750 KQDLNLIILDEADAMTNDAQNALRRIIEKYTENVRFCIICNYLGKIIPALQSRCTRFRFA 571
++D +++L E D +T DAQ+ALRR +EKY R + CN K+IP ++SRC R
Sbjct: 126 QRDFKVVLLTEVDKLTKDAQHALRRTMEKYMSTCRLILCCNSTSKVIPPIRSRCLAVRVP 185
Query: 570 PLKQDQIVPRLQEIVTTEGVKMSEGGMKALLTLSGGDMRKVL 445
+ I L + EG+ + L S ++RK L
Sbjct: 186 APSIEDICHVLSTVCKKEGLNLPSQLAHRLAEKSCRNLRKAL 227
>AF484446-1|AAL82505.1| 356|Homo sapiens replication factor C
(activator 1) 3 (38kD) protein.
Length = 356
Score = 66.5 bits (155), Expect = 1e-10
Identities = 34/102 (33%), Positives = 52/102 (50%)
Frame = -2
Query: 750 KQDLNLIILDEADAMTNDAQNALRRIIEKYTENVRFCIICNYLGKIIPALQSRCTRFRFA 571
++D +++L E D +T DAQ+ALRR +EKY R + CN K+IP ++SRC R
Sbjct: 126 QRDFKVVLLTEVDKLTKDAQHALRRTMEKYMSTCRLILCCNSTSKVIPPIRSRCLAVRVP 185
Query: 570 PLKQDQIVPRLQEIVTTEGVKMSEGGMKALLTLSGGDMRKVL 445
+ I L + EG+ + L S ++RK L
Sbjct: 186 APSIEDICHVLSTVCKKEGLNLPSQLAHRLAEKSCRNLRKAL 227
>AK222572-1|BAD96292.1| 356|Homo sapiens replication factor C 3
isoform 1 variant protein.
Length = 356
Score = 65.7 bits (153), Expect = 2e-10
Identities = 34/102 (33%), Positives = 52/102 (50%)
Frame = -2
Query: 750 KQDLNLIILDEADAMTNDAQNALRRIIEKYTENVRFCIICNYLGKIIPALQSRCTRFRFA 571
++D +++L E D +T DAQ+ALRR +EKY R + CN K+IP ++SRC R
Sbjct: 126 QRDFKVVLLTEVDKLTKDAQHALRRTMEKYMSTCRLILCCNSTSKVIPPIRSRCLAVRVP 185
Query: 570 PLKQDQIVPRLQEIVTTEGVKMSEGGMKALLTLSGGDMRKVL 445
+ I L + EG+ + L S ++RK L
Sbjct: 186 APSIEGICHVLSTVCKKEGLNLPSQLAHRLAEKSCRNLRKAL 227
>Z22642-1|CAA80355.1| 1147|Homo sapiens PO-GA protein.
Length = 1147
Score = 40.3 bits (90), Expect = 0.007
Identities = 30/108 (27%), Positives = 53/108 (49%), Gaps = 3/108 (2%)
Frame = -2
Query: 732 IILDEADAMT-NDAQNALRRIIE--KYTENVRFCIICNYLGKIIPALQSRCTRFRFAPLK 562
+I+DE D M N+ + ++ +I K+T+ C+ + I +L C RF +
Sbjct: 716 LIMDEVDGMAGNEDRGGIQELIGLIKHTKIPIICMCNDRNHPKIRSLVHYCFDLRFQRPR 775
Query: 561 QDQIVPRLQEIVTTEGVKMSEGGMKALLTLSGGDMRKVLNTLQSTWLA 418
+QI + I EG+K+ M ++ + D+R+VL+ L S W A
Sbjct: 776 VEQIKGAMMSIAFKEGLKIPPPAMNEIILGANQDIRQVLHNL-SMWCA 822
>L23320-1|AAA16121.1| 1148|Homo sapiens replication factor C large
subunit protein.
Length = 1148
Score = 40.3 bits (90), Expect = 0.007
Identities = 30/108 (27%), Positives = 53/108 (49%), Gaps = 3/108 (2%)
Frame = -2
Query: 732 IILDEADAMT-NDAQNALRRIIE--KYTENVRFCIICNYLGKIIPALQSRCTRFRFAPLK 562
+I+DE D M N+ + ++ +I K+T+ C+ + I +L C RF +
Sbjct: 717 LIMDEVDGMAGNEDRGGIQELIGLIKHTKIPIICMCNDRNHPKIRSLVHYCFDLRFQRPR 776
Query: 561 QDQIVPRLQEIVTTEGVKMSEGGMKALLTLSGGDMRKVLNTLQSTWLA 418
+QI + I EG+K+ M ++ + D+R+VL+ L S W A
Sbjct: 777 VEQIKGAMMSIAFKEGLKIPPPAMNEIILGANQDIRQVLHNL-SMWCA 823
>BC051786-1|AAH51786.1| 1148|Homo sapiens RFC1 protein protein.
Length = 1148
Score = 40.3 bits (90), Expect = 0.007
Identities = 30/108 (27%), Positives = 53/108 (49%), Gaps = 3/108 (2%)
Frame = -2
Query: 732 IILDEADAMT-NDAQNALRRIIE--KYTENVRFCIICNYLGKIIPALQSRCTRFRFAPLK 562
+I+DE D M N+ + ++ +I K+T+ C+ + I +L C RF +
Sbjct: 717 LIMDEVDGMAGNEDRGGIQELIGLIKHTKIPIICMCNDRNHPKIRSLVHYCFDLRFQRPR 776
Query: 561 QDQIVPRLQEIVTTEGVKMSEGGMKALLTLSGGDMRKVLNTLQSTWLA 418
+QI + I EG+K+ M ++ + D+R+VL+ L S W A
Sbjct: 777 VEQIKGAMMSIAFKEGLKIPPPAMNEIILGANQDIRQVLHNL-SMWCA 823
>BC051751-1|AAH51751.1| 1147|Homo sapiens replication factor C
(activator 1) 1, 145kDa protein.
Length = 1147
Score = 40.3 bits (90), Expect = 0.007
Identities = 30/108 (27%), Positives = 53/108 (49%), Gaps = 3/108 (2%)
Frame = -2
Query: 732 IILDEADAMT-NDAQNALRRIIE--KYTENVRFCIICNYLGKIIPALQSRCTRFRFAPLK 562
+I+DE D M N+ + ++ +I K+T+ C+ + I +L C RF +
Sbjct: 716 LIMDEVDGMAGNEDRGGIQELIGLIKHTKIPIICMCNDRNHPKIRSLVHYCFDLRFQRPR 775
Query: 561 QDQIVPRLQEIVTTEGVKMSEGGMKALLTLSGGDMRKVLNTLQSTWLA 418
+QI + I EG+K+ M ++ + D+R+VL+ L S W A
Sbjct: 776 VEQIKGAMMSIAFKEGLKIPPPAMNEIILGANQDIRQVLHNL-SMWCA 822
>BC035297-1|AAH35297.1| 1148|Homo sapiens replication factor C
(activator 1) 1, 145kDa protein.
Length = 1148
Score = 40.3 bits (90), Expect = 0.007
Identities = 30/108 (27%), Positives = 53/108 (49%), Gaps = 3/108 (2%)
Frame = -2
Query: 732 IILDEADAMT-NDAQNALRRIIE--KYTENVRFCIICNYLGKIIPALQSRCTRFRFAPLK 562
+I+DE D M N+ + ++ +I K+T+ C+ + I +L C RF +
Sbjct: 717 LIMDEVDGMAGNEDRGGIQELIGLIKHTKIPIICMCNDRNHPKIRSLVHYCFDLRFQRPR 776
Query: 561 QDQIVPRLQEIVTTEGVKMSEGGMKALLTLSGGDMRKVLNTLQSTWLA 418
+QI + I EG+K+ M ++ + D+R+VL+ L S W A
Sbjct: 777 VEQIKGAMMSIAFKEGLKIPPPAMNEIILGANQDIRQVLHNL-SMWCA 823
>AY600371-1|AAS94325.1| 1147|Homo sapiens replication factor C
(activator 1) 1, 145kDa protein.
Length = 1147
Score = 40.3 bits (90), Expect = 0.007
Identities = 30/108 (27%), Positives = 53/108 (49%), Gaps = 3/108 (2%)
Frame = -2
Query: 732 IILDEADAMT-NDAQNALRRIIE--KYTENVRFCIICNYLGKIIPALQSRCTRFRFAPLK 562
+I+DE D M N+ + ++ +I K+T+ C+ + I +L C RF +
Sbjct: 716 LIMDEVDGMAGNEDRGGIQELIGLIKHTKIPIICMCNDRNHPKIRSLVHYCFDLRFQRPR 775
Query: 561 QDQIVPRLQEIVTTEGVKMSEGGMKALLTLSGGDMRKVLNTLQSTWLA 418
+QI + I EG+K+ M ++ + D+R+VL+ L S W A
Sbjct: 776 VEQIKGAMMSIAFKEGLKIPPPAMNEIILGANQDIRQVLHNL-SMWCA 822
>AF040250-1|AAB99788.1| 1147|Homo sapiens DNA binding protein protein.
Length = 1147
Score = 40.3 bits (90), Expect = 0.007
Identities = 30/108 (27%), Positives = 53/108 (49%), Gaps = 3/108 (2%)
Frame = -2
Query: 732 IILDEADAMT-NDAQNALRRIIE--KYTENVRFCIICNYLGKIIPALQSRCTRFRFAPLK 562
+I+DE D M N+ + ++ +I K+T+ C+ + I +L C RF +
Sbjct: 716 LIMDEVDGMAGNEDRGGIQELIGLIKHTKIPIICMCNDRNHPKIRSLVHYCFDLRFQRPR 775
Query: 561 QDQIVPRLQEIVTTEGVKMSEGGMKALLTLSGGDMRKVLNTLQSTWLA 418
+QI + I EG+K+ M ++ + D+R+VL+ L S W A
Sbjct: 776 VEQIKGAMMSIAFKEGLKIPPPAMNEIILGANQDIRQVLHNL-SMWCA 822
>BC018184-1|AAH18184.1| 975|Homo sapiens CTF18, chromosome
transmission fidelity factor 18 homolog (S. cerevisiae)
protein.
Length = 975
Score = 39.5 bits (88), Expect = 0.013
Identities = 20/70 (28%), Positives = 34/70 (48%)
Frame = -2
Query: 642 CIICNYLGKIIPALQSRCTRFRFAPLKQDQIVPRLQEIVTTEGVKMSEGGMKALLTLSGG 463
CI + + L+ + F P ++V RLQE+ +G++ G + AL +
Sbjct: 488 CICNDQFAPSLRQLKQQAFLLHFPPTLPSRLVQRLQEVSLRQGMRADPGVLAALCEKTDN 547
Query: 462 DMRKVLNTLQ 433
D+R +NTLQ
Sbjct: 548 DIRACINTLQ 557
>BC006437-1|AAH06437.1| 1016|Homo sapiens CHTF18 protein protein.
Length = 1016
Score = 39.5 bits (88), Expect = 0.013
Identities = 20/70 (28%), Positives = 34/70 (48%)
Frame = -2
Query: 642 CIICNYLGKIIPALQSRCTRFRFAPLKQDQIVPRLQEIVTTEGVKMSEGGMKALLTLSGG 463
CI + + L+ + F P ++V RLQE+ +G++ G + AL +
Sbjct: 529 CICNDQFAPSLRQLKQQAFLLHFPPTLPSRLVQRLQEVSLRQGMRADPGVLAALCEKTDN 588
Query: 462 DMRKVLNTLQ 433
D+R +NTLQ
Sbjct: 589 DIRACINTLQ 598
>BC006278-1|AAH06278.2| 975|Homo sapiens CTF18, chromosome
transmission fidelity factor 18 homolog (S. cerevisiae)
protein.
Length = 975
Score = 39.5 bits (88), Expect = 0.013
Identities = 20/70 (28%), Positives = 34/70 (48%)
Frame = -2
Query: 642 CIICNYLGKIIPALQSRCTRFRFAPLKQDQIVPRLQEIVTTEGVKMSEGGMKALLTLSGG 463
CI + + L+ + F P ++V RLQE+ +G++ G + AL +
Sbjct: 488 CICNDQFAPSLRQLKQQAFLLHFPPTLPSRLVQRLQEVSLRQGMRADPGVLAALCEKTDN 547
Query: 462 DMRKVLNTLQ 433
D+R +NTLQ
Sbjct: 548 DIRACINTLQ 557
>AK024476-1|BAB15766.1| 579|Homo sapiens FLJ00069 protein protein.
Length = 579
Score = 39.5 bits (88), Expect = 0.013
Identities = 20/70 (28%), Positives = 34/70 (48%)
Frame = -2
Query: 642 CIICNYLGKIIPALQSRCTRFRFAPLKQDQIVPRLQEIVTTEGVKMSEGGMKALLTLSGG 463
CI + + L+ + F P ++V RLQE+ +G++ G + AL +
Sbjct: 92 CICNDQFAPSLRQLKQQAFLLHFPPTLPSRLVQRLQEVSLRQGMRADPGVLAALCEKTDN 151
Query: 462 DMRKVLNTLQ 433
D+R +NTLQ
Sbjct: 152 DIRACINTLQ 161
>AE006465-2|AAK61256.1| 1184|Homo sapiens some homology with
holliday junction DNA helicase RUVB like protein.
Length = 1184
Score = 31.5 bits (68), Expect = 3.5
Identities = 20/70 (28%), Positives = 32/70 (45%)
Frame = -2
Query: 642 CIICNYLGKIIPALQSRCTRFRFAPLKQDQIVPRLQEIVTTEGVKMSEGGMKALLTLSGG 463
CI + + L+ + F P ++V RLQE G++ G + AL +
Sbjct: 683 CICNDQFAPSLRQLKQQAFLLHFPPTLPSRLVQRLQE-----GMRADPGVLAALCEKTDN 737
Query: 462 DMRKVLNTLQ 433
D+R +NTLQ
Sbjct: 738 DIRACINTLQ 747
>M22299-1|AAB02844.1| 570|Homo sapiens T-plastin polypeptide
protein.
Length = 570
Score = 31.1 bits (67), Expect = 4.6
Identities = 22/67 (32%), Positives = 34/67 (50%), Gaps = 3/67 (4%)
Frame = -2
Query: 441 TLQSTWLAYRDVTEDNVYTCVGHPLRADIDSILNWL---LNENDFSACFKSIQDLKIAKG 271
TL W R T NV +G +A+ D I+NW+ L+E S +S +D I+
Sbjct: 434 TLALVWQLMRRYTL-NVLEDLGDGQKANDDIIVNWVNRTLSEAGKSTSIQSFKDKTISSS 492
Query: 270 LALSDIL 250
LA+ D++
Sbjct: 493 LAVVDLI 499
>BC150494-1|AAI50495.1| 150|Homo sapiens Unknown (protein for
IMAGE:40134238) protein.
Length = 150
Score = 31.1 bits (67), Expect = 4.6
Identities = 22/67 (32%), Positives = 34/67 (50%), Gaps = 3/67 (4%)
Frame = -2
Query: 441 TLQSTWLAYRDVTEDNVYTCVGHPLRADIDSILNWL---LNENDFSACFKSIQDLKIAKG 271
TL W R T NV +G +A+ D I+NW+ L+E S +S +D I+
Sbjct: 14 TLALVWQLMRRYTL-NVLEDLGDGQKANDDIIVNWVNRTLSEAGKSTSIQSFKDKTISSS 72
Query: 270 LALSDIL 250
LA+ D++
Sbjct: 73 LAVVDLI 79
>BC056898-1|AAH56898.1| 630|Homo sapiens plastin 3 (T isoform)
protein.
Length = 630
Score = 31.1 bits (67), Expect = 4.6
Identities = 22/67 (32%), Positives = 34/67 (50%), Gaps = 3/67 (4%)
Frame = -2
Query: 441 TLQSTWLAYRDVTEDNVYTCVGHPLRADIDSILNWL---LNENDFSACFKSIQDLKIAKG 271
TL W R T NV +G +A+ D I+NW+ L+E S +S +D I+
Sbjct: 494 TLALVWQLMRRYTL-NVLEDLGDGQKANDDIIVNWVNRTLSEAGKSTSIQSFKDKTISSS 552
Query: 270 LALSDIL 250
LA+ D++
Sbjct: 553 LAVVDLI 559
>BC039049-1|AAH39049.1| 630|Homo sapiens plastin 3 (T isoform)
protein.
Length = 630
Score = 31.1 bits (67), Expect = 4.6
Identities = 22/67 (32%), Positives = 34/67 (50%), Gaps = 3/67 (4%)
Frame = -2
Query: 441 TLQSTWLAYRDVTEDNVYTCVGHPLRADIDSILNWL---LNENDFSACFKSIQDLKIAKG 271
TL W R T NV +G +A+ D I+NW+ L+E S +S +D I+
Sbjct: 494 TLALVWQLMRRYTL-NVLEDLGDGQKANDDIIVNWVNRTLSEAGKSTSIQSFKDKTISSS 552
Query: 270 LALSDIL 250
LA+ D++
Sbjct: 553 LAVVDLI 559
>BC008588-1|AAH08588.1| 409|Homo sapiens Similar to plastin 3 (T
isoform) protein.
Length = 409
Score = 31.1 bits (67), Expect = 4.6
Identities = 22/67 (32%), Positives = 34/67 (50%), Gaps = 3/67 (4%)
Frame = -2
Query: 441 TLQSTWLAYRDVTEDNVYTCVGHPLRADIDSILNWL---LNENDFSACFKSIQDLKIAKG 271
TL W R T NV +G +A+ D I+NW+ L+E S +S +D I+
Sbjct: 273 TLALVWQLMRRYTL-NVLEDLGDGQKANDDIIVNWVNRTLSEAGKSTSIQSFKDKTISSS 331
Query: 270 LALSDIL 250
LA+ D++
Sbjct: 332 LAVVDLI 338
>AL589842-1|CAI39884.1| 627|Homo sapiens plastin 3 (T isoform)
protein.
Length = 627
Score = 31.1 bits (67), Expect = 4.6
Identities = 22/67 (32%), Positives = 34/67 (50%), Gaps = 3/67 (4%)
Frame = -2
Query: 441 TLQSTWLAYRDVTEDNVYTCVGHPLRADIDSILNWL---LNENDFSACFKSIQDLKIAKG 271
TL W R T NV +G +A+ D I+NW+ L+E S +S +D I+
Sbjct: 491 TLALVWQLMRRYTL-NVLEDLGDGQKANDDIIVNWVNRTLSEAGKSTSIQSFKDKTISSS 549
Query: 270 LALSDIL 250
LA+ D++
Sbjct: 550 LAVVDLI 556
>AK222801-1|BAD96521.1| 630|Homo sapiens plastin 3 variant protein.
Length = 630
Score = 31.1 bits (67), Expect = 4.6
Identities = 22/67 (32%), Positives = 34/67 (50%), Gaps = 3/67 (4%)
Frame = -2
Query: 441 TLQSTWLAYRDVTEDNVYTCVGHPLRADIDSILNWL---LNENDFSACFKSIQDLKIAKG 271
TL W R T NV +G +A+ D I+NW+ L+E S +S +D I+
Sbjct: 494 TLALVWQLMRRYTL-NVLEDLGDGQKANDDIIVNWVNRTLSEAGKSTSIQSFKDKTISSS 552
Query: 270 LALSDIL 250
LA+ D++
Sbjct: 553 LAVVDLI 559
>BC060759-1|AAH60759.1| 1359|Homo sapiens MED23 protein protein.
Length = 1359
Score = 30.7 bits (66), Expect = 6.0
Identities = 20/87 (22%), Positives = 40/87 (45%)
Frame = -2
Query: 417 YRDVTEDNVYTCVGHPLRADIDSILNWLLNENDFSACFKSIQDLKIAKGLALSDILAEVH 238
Y V D + + + P + + DF+AC +S ++ + LAL+ + H
Sbjct: 1160 YWIVLHDRIVSVISSPSLTSETEWVGYPFRLFDFTACHQSYSEMSCSYTLALAHAVWH-H 1218
Query: 237 TIIQRVKLPPEVLVSLLIKMSDAEARL 157
+ I ++ L P+ L +L+ + E +L
Sbjct: 1219 SSIGQLSLIPKFLTEVLLPIVKTEFQL 1245
>AL121575-7|CAB92072.1| 1368|Homo sapiens cofactor required for Sp1
transcriptional activation, subunit 3, 130kDa protein.
Length = 1368
Score = 30.7 bits (66), Expect = 6.0
Identities = 20/87 (22%), Positives = 40/87 (45%)
Frame = -2
Query: 417 YRDVTEDNVYTCVGHPLRADIDSILNWLLNENDFSACFKSIQDLKIAKGLALSDILAEVH 238
Y V D + + + P + + DF+AC +S ++ + LAL+ + H
Sbjct: 1160 YWIVLHDRIVSVISSPSLTSETEWVGYPFRLFDFTACHQSYSEMSCSYTLALAHAVWH-H 1218
Query: 237 TIIQRVKLPPEVLVSLLIKMSDAEARL 157
+ I ++ L P+ L +L+ + E +L
Sbjct: 1219 SSIGQLSLIPKFLTEVLLPIVKTEFQL 1245
>AL121575-6|CAI23321.1| 1374|Homo sapiens cofactor required for Sp1
transcriptional activation, subunit 3, 130kDa protein.
Length = 1374
Score = 30.7 bits (66), Expect = 6.0
Identities = 20/87 (22%), Positives = 40/87 (45%)
Frame = -2
Query: 417 YRDVTEDNVYTCVGHPLRADIDSILNWLLNENDFSACFKSIQDLKIAKGLALSDILAEVH 238
Y V D + + + P + + DF+AC +S ++ + LAL+ + H
Sbjct: 1166 YWIVLHDRIVSVISSPSLTSETEWVGYPFRLFDFTACHQSYSEMSCSYTLALAHAVWH-H 1224
Query: 237 TIIQRVKLPPEVLVSLLIKMSDAEARL 157
+ I ++ L P+ L +L+ + E +L
Sbjct: 1225 SSIGQLSLIPKFLTEVLLPIVKTEFQL 1251
>AL121575-5|CAI23320.1| 1364|Homo sapiens cofactor required for Sp1
transcriptional activation, subunit 3, 130kDa protein.
Length = 1364
Score = 30.7 bits (66), Expect = 6.0
Identities = 20/87 (22%), Positives = 40/87 (45%)
Frame = -2
Query: 417 YRDVTEDNVYTCVGHPLRADIDSILNWLLNENDFSACFKSIQDLKIAKGLALSDILAEVH 238
Y V D + + + P + + DF+AC +S ++ + LAL+ + H
Sbjct: 1160 YWIVLHDRIVSVISSPSLTSETEWVGYPFRLFDFTACHQSYSEMSCSYTLALAHAVWH-H 1218
Query: 237 TIIQRVKLPPEVLVSLLIKMSDAEARL 157
+ I ++ L P+ L +L+ + E +L
Sbjct: 1219 SSIGQLSLIPKFLTEVLLPIVKTEFQL 1245
>AL121575-4|CAI23319.1| 1365|Homo sapiens cofactor required for Sp1
transcriptional activation, subunit 3, 130kDa protein.
Length = 1365
Score = 30.7 bits (66), Expect = 6.0
Identities = 20/87 (22%), Positives = 40/87 (45%)
Frame = -2
Query: 417 YRDVTEDNVYTCVGHPLRADIDSILNWLLNENDFSACFKSIQDLKIAKGLALSDILAEVH 238
Y V D + + + P + + DF+AC +S ++ + LAL+ + H
Sbjct: 1166 YWIVLHDRIVSVISSPSLTSETEWVGYPFRLFDFTACHQSYSEMSCSYTLALAHAVWH-H 1224
Query: 237 TIIQRVKLPPEVLVSLLIKMSDAEARL 157
+ I ++ L P+ L +L+ + E +L
Sbjct: 1225 SSIGQLSLIPKFLTEVLLPIVKTEFQL 1251
>AF135022-1|AAD30202.1| 1364|Homo sapiens mediator protein.
Length = 1364
Score = 30.7 bits (66), Expect = 6.0
Identities = 20/87 (22%), Positives = 40/87 (45%)
Frame = -2
Query: 417 YRDVTEDNVYTCVGHPLRADIDSILNWLLNENDFSACFKSIQDLKIAKGLALSDILAEVH 238
Y V D + + + P + + DF+AC +S ++ + LAL+ + H
Sbjct: 1160 YWIVLHDRIVSVISSPSLTSETEWVGYPFRLFDFTACHQSYSEMSCSYTLALAHAVWH-H 1218
Query: 237 TIIQRVKLPPEVLVSLLIKMSDAEARL 157
+ I ++ L P+ L +L+ + E +L
Sbjct: 1219 SSIGQLSLIPKFLTEVLLPIVKTEFQL 1245
>AF105332-1|AAD31729.1| 1368|Homo sapiens vitamin D3 receptor
interacting protein protein.
Length = 1368
Score = 30.7 bits (66), Expect = 6.0
Identities = 20/87 (22%), Positives = 40/87 (45%)
Frame = -2
Query: 417 YRDVTEDNVYTCVGHPLRADIDSILNWLLNENDFSACFKSIQDLKIAKGLALSDILAEVH 238
Y V D + + + P + + DF+AC +S ++ + LAL+ + H
Sbjct: 1160 YWIVLHDRIVSVISSPSLTSETEWVGYPFRLFDFTACHQSYSEMSCSYTLALAHAVWH-H 1218
Query: 237 TIIQRVKLPPEVLVSLLIKMSDAEARL 157
+ I ++ L P+ L +L+ + E +L
Sbjct: 1219 SSIGQLSLIPKFLTEVLLPIVKTEFQL 1245
>AB033042-1|BAA86530.1| 1421|Homo sapiens KIAA1216 protein protein.
Length = 1421
Score = 30.7 bits (66), Expect = 6.0
Identities = 20/87 (22%), Positives = 40/87 (45%)
Frame = -2
Query: 417 YRDVTEDNVYTCVGHPLRADIDSILNWLLNENDFSACFKSIQDLKIAKGLALSDILAEVH 238
Y V D + + + P + + DF+AC +S ++ + LAL+ + H
Sbjct: 1213 YWIVLHDRIVSVISSPSLTSETEWVGYPFRLFDFTACHQSYSEMSCSYTLALAHAVWH-H 1271
Query: 237 TIIQRVKLPPEVLVSLLIKMSDAEARL 157
+ I ++ L P+ L +L+ + E +L
Sbjct: 1272 SSIGQLSLIPKFLTEVLLPIVKTEFQL 1298
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 98,802,626
Number of Sequences: 237096
Number of extensions: 1956849
Number of successful extensions: 4161
Number of sequences better than 10.0: 52
Number of HSP's better than 10.0 without gapping: 3746
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4155
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 9311505506
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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