Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte16e22
(772 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY119188-1|AAM51048.1| 332|Drosophila melanogaster SD11293p pro... 285 3e-77
AF247499-1|AAF63387.1| 332|Drosophila melanogaster replication ... 285 3e-77
AE014134-1878|AAF52944.2| 332|Drosophila melanogaster CG5313-PA... 285 3e-77
U15967-1|AAB60241.1| 331|Drosophila melanogaster rfc40 protein. 127 1e-29
AY094829-1|AAM11182.1| 331|Drosophila melanogaster LD40483p pro... 127 1e-29
AE014296-772|AAF47843.1| 331|Drosophila melanogaster CG14999-PA... 127 1e-29
AY069598-1|AAL39743.1| 353|Drosophila melanogaster LD35209p pro... 118 9e-27
AE014298-2614|AAF48768.2| 353|Drosophila melanogaster CG8142-PA... 118 9e-27
AF160912-1|AAD46852.2| 395|Drosophila melanogaster LD06837p pro... 72 1e-12
AE014134-2037|AAF53076.2| 356|Drosophila melanogaster CG6258-PA... 72 1e-12
AY094968-1|AAM11321.1| 874|Drosophila melanogaster SD07712p pro... 31 1.7
AF287273-1|AAL02426.1| 993|Drosophila melanogaster DNA replicat... 31 1.7
AE014134-661|AAN10380.2| 993|Drosophila melanogaster CG33122-PA... 31 1.7
>AY119188-1|AAM51048.1| 332|Drosophila melanogaster SD11293p
protein.
Length = 332
Score = 285 bits (700), Expect = 3e-77
Identities = 134/220 (60%), Positives = 172/220 (78%)
Frame = -2
Query: 735 LIILDEADAMTNDAQNALRRIIEKYTENVRFCIICNYLGKIIPALQSRCTRFRFAPLKQD 556
LIILDEADAMTNDAQNALRRIIEKYT+NVRFC+ICNYL KIIPALQSRCTRFRFAPL QD
Sbjct: 112 LIILDEADAMTNDAQNALRRIIEKYTDNVRFCVICNYLSKIIPALQSRCTRFRFAPLSQD 171
Query: 555 QIVPRLQEIVTTEGVKMSEGGMKALLTLSGGDMRKVLNTLQSTWLAYRDVTEDNVYTCVG 376
Q++PRL++I+ E V+++E G +ALLTL+ GDMRKVLN LQST +A+ V EDNVY CVG
Sbjct: 172 QMMPRLEKIIEAEAVQITEDGKRALLTLAKGDMRKVLNVLQSTVMAFDTVNEDNVYMCVG 231
Query: 375 HPLRADIDSILNWLLNENDFSACFKSIQDLKIAKGLALSDILAEVHTIIQRVKLPPEVLV 196
+PLR DI+ IL LL+ + FK+++ K A+GLAL DI+ E+H + R++LP V+
Sbjct: 232 YPLRQDIEQILKALLSGSSLEDSFKTVESAKYARGLALEDIITELHLFVMRLELPMSVMN 291
Query: 195 SLLIKMSDAEARLASGSSERVELAALIASFQIARDQVKLD 76
L++K++ E RLA G +E + AAL+A+F I RD V ++
Sbjct: 292 KLIVKLAQIEERLAKGCTEVAQTAALVAAFFICRDMVSME 331
>AF247499-1|AAF63387.1| 332|Drosophila melanogaster replication
factor C subunit 3 protein.
Length = 332
Score = 285 bits (700), Expect = 3e-77
Identities = 134/220 (60%), Positives = 172/220 (78%)
Frame = -2
Query: 735 LIILDEADAMTNDAQNALRRIIEKYTENVRFCIICNYLGKIIPALQSRCTRFRFAPLKQD 556
LIILDEADAMTNDAQNALRRIIEKYT+NVRFC+ICNYL KIIPALQSRCTRFRFAPL QD
Sbjct: 112 LIILDEADAMTNDAQNALRRIIEKYTDNVRFCVICNYLSKIIPALQSRCTRFRFAPLSQD 171
Query: 555 QIVPRLQEIVTTEGVKMSEGGMKALLTLSGGDMRKVLNTLQSTWLAYRDVTEDNVYTCVG 376
Q++PRL++I+ E V+++E G +ALLTL+ GDMRKVLN LQST +A+ V EDNVY CVG
Sbjct: 172 QMMPRLEKIIEAEAVQITEDGKRALLTLAKGDMRKVLNVLQSTVMAFDTVNEDNVYMCVG 231
Query: 375 HPLRADIDSILNWLLNENDFSACFKSIQDLKIAKGLALSDILAEVHTIIQRVKLPPEVLV 196
+PLR DI+ IL LL+ + FK+++ K A+GLAL DI+ E+H + R++LP V+
Sbjct: 232 YPLRQDIEQILKALLSGSSLEDSFKTVESAKYARGLALEDIITELHLFVMRLELPMSVMN 291
Query: 195 SLLIKMSDAEARLASGSSERVELAALIASFQIARDQVKLD 76
L++K++ E RLA G +E + AAL+A+F I RD V ++
Sbjct: 292 KLIVKLAQIEERLAKGCTEVAQTAALVAAFFICRDMVSME 331
>AE014134-1878|AAF52944.2| 332|Drosophila melanogaster CG5313-PA
protein.
Length = 332
Score = 285 bits (700), Expect = 3e-77
Identities = 134/220 (60%), Positives = 172/220 (78%)
Frame = -2
Query: 735 LIILDEADAMTNDAQNALRRIIEKYTENVRFCIICNYLGKIIPALQSRCTRFRFAPLKQD 556
LIILDEADAMTNDAQNALRRIIEKYT+NVRFC+ICNYL KIIPALQSRCTRFRFAPL QD
Sbjct: 112 LIILDEADAMTNDAQNALRRIIEKYTDNVRFCVICNYLSKIIPALQSRCTRFRFAPLSQD 171
Query: 555 QIVPRLQEIVTTEGVKMSEGGMKALLTLSGGDMRKVLNTLQSTWLAYRDVTEDNVYTCVG 376
Q++PRL++I+ E V+++E G +ALLTL+ GDMRKVLN LQST +A+ V EDNVY CVG
Sbjct: 172 QMMPRLEKIIEAEAVQITEDGKRALLTLAKGDMRKVLNVLQSTVMAFDTVNEDNVYMCVG 231
Query: 375 HPLRADIDSILNWLLNENDFSACFKSIQDLKIAKGLALSDILAEVHTIIQRVKLPPEVLV 196
+PLR DI+ IL LL+ + FK+++ K A+GLAL DI+ E+H + R++LP V+
Sbjct: 232 YPLRQDIEQILKALLSGSSLEDSFKTVESAKYARGLALEDIITELHLFVMRLELPMSVMN 291
Query: 195 SLLIKMSDAEARLASGSSERVELAALIASFQIARDQVKLD 76
L++K++ E RLA G +E + AAL+A+F I RD V ++
Sbjct: 292 KLIVKLAQIEERLAKGCTEVAQTAALVAAFFICRDMVSME 331
>U15967-1|AAB60241.1| 331|Drosophila melanogaster rfc40 protein.
Length = 331
Score = 127 bits (307), Expect = 1e-29
Identities = 68/216 (31%), Positives = 118/216 (54%)
Frame = -2
Query: 735 LIILDEADAMTNDAQNALRRIIEKYTENVRFCIICNYLGKIIPALQSRCTRFRFAPLKQD 556
++ILDEAD+MT AQ ALRR +E Y+ RF + CN KII +QSRC RF L
Sbjct: 117 IVILDEADSMTEGAQQALRRTMEIYSSTTRFALACNTSEKIIEPIQSRCAMLRFTKLSDA 176
Query: 555 QIVPRLQEIVTTEGVKMSEGGMKALLTLSGGDMRKVLNTLQSTWLAYRDVTEDNVYTCVG 376
Q++ +L E+ E + +E G++A++ + GDMR+ LN LQST + D+T +NV+
Sbjct: 177 QVLAKLIEVAKWEKLNYTEDGLEAIVFTAQGDMRQGLNNLQSTAQGFGDITAENVFKVCD 236
Query: 375 HPLRADIDSILNWLLNENDFSACFKSIQDLKIAKGLALSDILAEVHTIIQRVKLPPEVLV 196
P ++ +++ ND +K + L G + DI+A + + +R+ + + +
Sbjct: 237 EPHPKLLEEMIHHCA-ANDIHKAYKILAKL-WKLGYSPEDIIANIFRVCKRINIDEHLKL 294
Query: 195 SLLIKMSDAEARLASGSSERVELAALIASFQIARDQ 88
+ ++ ++ G + ++L AL+A IA ++
Sbjct: 295 DFIREIGITHMKIIDGINSLLQLTALLAKLCIAAEK 330
>AY094829-1|AAM11182.1| 331|Drosophila melanogaster LD40483p
protein.
Length = 331
Score = 127 bits (307), Expect = 1e-29
Identities = 68/216 (31%), Positives = 118/216 (54%)
Frame = -2
Query: 735 LIILDEADAMTNDAQNALRRIIEKYTENVRFCIICNYLGKIIPALQSRCTRFRFAPLKQD 556
++ILDEAD+MT AQ ALRR +E Y+ RF + CN KII +QSRC RF L
Sbjct: 117 IVILDEADSMTEGAQQALRRTMEIYSSTTRFALACNTSEKIIEPIQSRCAMLRFTKLSDA 176
Query: 555 QIVPRLQEIVTTEGVKMSEGGMKALLTLSGGDMRKVLNTLQSTWLAYRDVTEDNVYTCVG 376
Q++ +L E+ E + +E G++A++ + GDMR+ LN LQST + D+T +NV+
Sbjct: 177 QVLAKLIEVAKWEKLNYTEDGLEAIVFTAQGDMRQGLNNLQSTAQGFGDITAENVFKVCD 236
Query: 375 HPLRADIDSILNWLLNENDFSACFKSIQDLKIAKGLALSDILAEVHTIIQRVKLPPEVLV 196
P ++ +++ ND +K + L G + DI+A + + +R+ + + +
Sbjct: 237 EPHPKLLEEMIHHCA-ANDIHKAYKILAKL-WKLGYSPEDIIANIFRVCKRINIDEHLKL 294
Query: 195 SLLIKMSDAEARLASGSSERVELAALIASFQIARDQ 88
+ ++ ++ G + ++L AL+A IA ++
Sbjct: 295 DFIREIGITHMKIIDGINSLLQLTALLAKLCIAAEK 330
>AE014296-772|AAF47843.1| 331|Drosophila melanogaster CG14999-PA
protein.
Length = 331
Score = 127 bits (307), Expect = 1e-29
Identities = 68/216 (31%), Positives = 118/216 (54%)
Frame = -2
Query: 735 LIILDEADAMTNDAQNALRRIIEKYTENVRFCIICNYLGKIIPALQSRCTRFRFAPLKQD 556
++ILDEAD+MT AQ ALRR +E Y+ RF + CN KII +QSRC RF L
Sbjct: 117 IVILDEADSMTEGAQQALRRTMEIYSSTTRFALACNTSEKIIEPIQSRCAMLRFTKLSDA 176
Query: 555 QIVPRLQEIVTTEGVKMSEGGMKALLTLSGGDMRKVLNTLQSTWLAYRDVTEDNVYTCVG 376
Q++ +L E+ E + +E G++A++ + GDMR+ LN LQST + D+T +NV+
Sbjct: 177 QVLAKLIEVAKWEKLNYTEDGLEAIVFTAQGDMRQGLNNLQSTAQGFGDITAENVFKVCD 236
Query: 375 HPLRADIDSILNWLLNENDFSACFKSIQDLKIAKGLALSDILAEVHTIIQRVKLPPEVLV 196
P ++ +++ ND +K + L G + DI+A + + +R+ + + +
Sbjct: 237 EPHPKLLEEMIHHCA-ANDIHKAYKILAKL-WKLGYSPEDIIANIFRVCKRINIDEHLKL 294
Query: 195 SLLIKMSDAEARLASGSSERVELAALIASFQIARDQ 88
+ ++ ++ G + ++L AL+A IA ++
Sbjct: 295 DFIREIGITHMKIIDGINSLLQLTALLAKLCIAAEK 330
>AY069598-1|AAL39743.1| 353|Drosophila melanogaster LD35209p
protein.
Length = 353
Score = 118 bits (284), Expect = 9e-27
Identities = 51/104 (49%), Positives = 79/104 (75%)
Frame = -2
Query: 735 LIILDEADAMTNDAQNALRRIIEKYTENVRFCIICNYLGKIIPALQSRCTRFRFAPLKQD 556
+IILDEAD+MT+ AQ+ALRR +EK + + RFC+ICNY+ +II + SRC++FRF L +D
Sbjct: 137 IIILDEADSMTHAAQSALRRTMEKESRSTRFCLICNYVSRIIVPITSRCSKFRFKALGED 196
Query: 555 QIVPRLQEIVTTEGVKMSEGGMKALLTLSGGDMRKVLNTLQSTW 424
+++ RL+ I EGVK+ + K+++ +SGGD+R+ + TLQS +
Sbjct: 197 KVIDRLKYICEMEGVKIEDDAYKSIVKISGGDLRRAITTLQSCY 240
>AE014298-2614|AAF48768.2| 353|Drosophila melanogaster CG8142-PA
protein.
Length = 353
Score = 118 bits (284), Expect = 9e-27
Identities = 51/104 (49%), Positives = 79/104 (75%)
Frame = -2
Query: 735 LIILDEADAMTNDAQNALRRIIEKYTENVRFCIICNYLGKIIPALQSRCTRFRFAPLKQD 556
+IILDEAD+MT+ AQ+ALRR +EK + + RFC+ICNY+ +II + SRC++FRF L +D
Sbjct: 137 IIILDEADSMTHAAQSALRRTMEKESRSTRFCLICNYVSRIIVPITSRCSKFRFKALGED 196
Query: 555 QIVPRLQEIVTTEGVKMSEGGMKALLTLSGGDMRKVLNTLQSTW 424
+++ RL+ I EGVK+ + K+++ +SGGD+R+ + TLQS +
Sbjct: 197 KVIDRLKYICEMEGVKIEDDAYKSIVKISGGDLRRAITTLQSCY 240
>AF160912-1|AAD46852.2| 395|Drosophila melanogaster LD06837p
protein.
Length = 395
Score = 71.7 bits (168), Expect = 1e-12
Identities = 38/111 (34%), Positives = 62/111 (55%)
Frame = -2
Query: 750 KQDLNLIILDEADAMTNDAQNALRRIIEKYTENVRFCIICNYLGKIIPALQSRCTRFRFA 571
+++ +I++ E D +T DAQ+ALRR +EKY R I N +IIPA++SRC R A
Sbjct: 165 QREFKVIVISEGDELTKDAQHALRRTMEKYVATCRIIISVNSTSRIIPAIRSRCLGIRVA 224
Query: 570 PLKQDQIVPRLQEIVTTEGVKMSEGGMKALLTLSGGDMRKVLNTLQSTWLA 418
+ +IV LQ EG+ + K ++ S ++R+ L L++ +A
Sbjct: 225 APNETEIVSILQNTCKREGLALPVELAKRVVDKSERNLRRALLMLEAAKVA 275
>AE014134-2037|AAF53076.2| 356|Drosophila melanogaster CG6258-PA
protein.
Length = 356
Score = 71.7 bits (168), Expect = 1e-12
Identities = 38/111 (34%), Positives = 62/111 (55%)
Frame = -2
Query: 750 KQDLNLIILDEADAMTNDAQNALRRIIEKYTENVRFCIICNYLGKIIPALQSRCTRFRFA 571
+++ +I++ E D +T DAQ+ALRR +EKY R I N +IIPA++SRC R A
Sbjct: 126 QREFKVIVISEGDELTKDAQHALRRTMEKYVATCRIIISVNSTSRIIPAIRSRCLGIRVA 185
Query: 570 PLKQDQIVPRLQEIVTTEGVKMSEGGMKALLTLSGGDMRKVLNTLQSTWLA 418
+ +IV LQ EG+ + K ++ S ++R+ L L++ +A
Sbjct: 186 APNETEIVSILQNTCKREGLALPVELAKRVVDKSERNLRRALLMLEAAKVA 236
>AY094968-1|AAM11321.1| 874|Drosophila melanogaster SD07712p
protein.
Length = 874
Score = 31.1 bits (67), Expect = 1.7
Identities = 15/48 (31%), Positives = 26/48 (54%)
Frame = -2
Query: 576 FAPLKQDQIVPRLQEIVTTEGVKMSEGGMKALLTLSGGDMRKVLNTLQ 433
F P+ ++ RL +I E +K G + AL SG D+R ++++Q
Sbjct: 434 FPPIDAARLAERLVKIAFKEQLKTDFGSLIALAEKSGNDVRSCISSMQ 481
>AF287273-1|AAL02426.1| 993|Drosophila melanogaster DNA replication
accessory factorCutlet protein.
Length = 993
Score = 31.1 bits (67), Expect = 1.7
Identities = 15/48 (31%), Positives = 26/48 (54%)
Frame = -2
Query: 576 FAPLKQDQIVPRLQEIVTTEGVKMSEGGMKALLTLSGGDMRKVLNTLQ 433
F P+ ++ RL +I E +K G + AL SG D+R ++++Q
Sbjct: 553 FPPIDAARLAERLVKIAFKEQLKTDFGSLIALAEKSGNDVRSCISSMQ 600
>AE014134-661|AAN10380.2| 993|Drosophila melanogaster CG33122-PA
protein.
Length = 993
Score = 31.1 bits (67), Expect = 1.7
Identities = 15/48 (31%), Positives = 26/48 (54%)
Frame = -2
Query: 576 FAPLKQDQIVPRLQEIVTTEGVKMSEGGMKALLTLSGGDMRKVLNTLQ 433
F P+ ++ RL +I E +K G + AL SG D+R ++++Q
Sbjct: 553 FPPIDAARLAERLVKIAFKEQLKTDFGSLIALAEKSGNDVRSCISSMQ 600
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 30,986,581
Number of Sequences: 53049
Number of extensions: 610816
Number of successful extensions: 1775
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1728
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1775
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3561257073
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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