Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte16e22
(772 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
L23648-10|AAK95878.2| 368|Caenorhabditis elegans Hypothetical p... 226 2e-59
AF036699-3|AAB88360.1| 334|Caenorhabditis elegans Rfc (dna repl... 124 5e-29
U40935-3|AAA81689.1| 334|Caenorhabditis elegans Rfc (dna replic... 109 3e-24
Z70307-13|CAA94339.1| 354|Caenorhabditis elegans Hypothetical p... 68 6e-12
Z75532-2|CAA99812.1| 839|Caenorhabditis elegans Hypothetical pr... 42 6e-04
Z68879-1|CAA93081.1| 850|Caenorhabditis elegans Hypothetical pr... 40 0.003
Z70680-8|CAA94570.2| 349|Caenorhabditis elegans Hypothetical pr... 29 3.7
AL132865-14|CAB60610.1| 363|Caenorhabditis elegans Hypothetical... 29 3.7
Z79694-8|CAB01965.1| 872|Caenorhabditis elegans Hypothetical pr... 29 4.8
Z72506-9|CAA96622.1| 872|Caenorhabditis elegans Hypothetical pr... 29 4.8
Z69637-7|CAO78728.1| 433|Caenorhabditis elegans Hypothetical pr... 29 4.8
Z69637-1|CAA93467.1| 601|Caenorhabditis elegans Hypothetical pr... 29 4.8
X08068-1|CAA30857.1| 882|Caenorhabditis elegans paramyosin prot... 29 4.8
Z81058-7|CAB02920.1| 1011|Caenorhabditis elegans Hypothetical pr... 28 8.5
Z47070-8|CAA87345.1| 5198|Caenorhabditis elegans Hypothetical pr... 28 8.5
Z47068-9|CAA87336.1| 5198|Caenorhabditis elegans Hypothetical pr... 28 8.5
Z46794-12|CAA86778.2| 1468|Caenorhabditis elegans Hypothetical p... 28 8.5
Z46794-11|CAA86785.2| 1470|Caenorhabditis elegans Hypothetical p... 28 8.5
AF074901-1|AAC26792.1| 5198|Caenorhabditis elegans hemicentin pr... 28 8.5
>L23648-10|AAK95878.2| 368|Caenorhabditis elegans Hypothetical
protein F44B9.8 protein.
Length = 368
Score = 226 bits (552), Expect = 2e-59
Identities = 106/210 (50%), Positives = 146/210 (69%)
Frame = -2
Query: 735 LIILDEADAMTNDAQNALRRIIEKYTENVRFCIICNYLGKIIPALQSRCTRFRFAPLKQD 556
L+ILDEADAMT DAQNALRR+IEKYT+NVRFCIICNYL I+PA+QSRCTRFRFAPL Q
Sbjct: 139 LVILDEADAMTKDAQNALRRVIEKYTDNVRFCIICNYLASIVPAIQSRCTRFRFAPLDQK 198
Query: 555 QIVPRLQEIVTTEGVKMSEGGMKALLTLSGGDMRKVLNTLQSTWLAYRDVTEDNVYTCVG 376
IVPRL+ IV TE +KM+ G ALL +S GDMR V+NTLQST +++ V+E+ VY C+G
Sbjct: 199 LIVPRLEYIVETEQLKMTPDGKDALLIVSKGDMRTVINTLQSTAMSFDTVSENTVYQCIG 258
Query: 375 HPLRADIDSILNWLLNENDFSACFKSIQDLKIAKGLALSDILAEVHTIIQRVKLPPEVLV 196
P ++ ++ LLN+ C +IQ G AL D++ +H + + +P E +
Sbjct: 259 QPTPKEMKEVVKTLLNDPS-KKCMNTIQTKLFENGYALQDVITHLHDFVFTLDIPDEAMS 317
Query: 195 SLLIKMSDAEARLASGSSERVELAALIASF 106
+++ + + E L++G S +LAA++A+F
Sbjct: 318 AIITGLGEVEENLSTGCSNETQLAAVVAAF 347
>AF036699-3|AAB88360.1| 334|Caenorhabditis elegans Rfc (dna
replication factor) familyprotein 2 protein.
Length = 334
Score = 124 bits (300), Expect = 5e-29
Identities = 73/212 (34%), Positives = 119/212 (56%), Gaps = 4/212 (1%)
Frame = -2
Query: 735 LIILDEADAMTNDAQNALRRIIEKYTENVRFCIICNYLGKIIPALQSRCTRFRFAPLKQD 556
+IILDEAD+MT+ AQ ALRR +E YT+ RF + CN KII +QSRC R+ L
Sbjct: 111 IIILDEADSMTDGAQQALRRTMEMYTKTTRFALACNQSEKIIEPIQSRCALLRYTKLSPV 170
Query: 555 QIVPRLQEIVTTEGVKMSEGGMKALLTLSGGDMRKVLNTLQSTWLAYRDVTEDNVYTCVG 376
Q++ R++E+ E V +GG++A+L + GDMR+ LN LQ+T AY V ++NV
Sbjct: 171 QLLTRVKEVAKAEKVNYDDGGLEAILFTAQGDMRQALNNLQATVNAYELVNKENVLKVCD 230
Query: 375 HPLRADIDSILNWLLNENDFSACFKSIQDLKIAKGLALSDILAEVHTIIQRVKLPPEVLV 196
P + +L++ + F A K I + G + DI++ + +++ V+L V
Sbjct: 231 EPHPDLMIKMLHYCTDRKFFEAS-KIIHEFH-RLGFSSDDIVSTLFRVVKTVELSKNVSE 288
Query: 195 SL----LIKMSDAEARLASGSSERVELAALIA 112
L + +++ R+ G + +++L+ LIA
Sbjct: 289 QLRMEYIRQIAMCHMRIVQGLTSKLQLSRLIA 320
>U40935-3|AAA81689.1| 334|Caenorhabditis elegans Rfc (dna
replication factor) familyprotein 4 protein.
Length = 334
Score = 109 bits (261), Expect = 3e-24
Identities = 57/133 (42%), Positives = 82/133 (61%)
Frame = -2
Query: 741 LNLIILDEADAMTNDAQNALRRIIEKYTENVRFCIICNYLGKIIPALQSRCTRFRFAPLK 562
L +IILDE DAMT +AQ A+RR+IE +++ RF +ICNY+ ++IP + SRC +FRF L
Sbjct: 119 LKIIILDEVDAMTREAQAAMRRVIEDFSKTTRFILICNYVSRLIPPVVSRCAKFRFKSLP 178
Query: 561 QDQIVPRLQEIVTTEGVKMSEGGMKALLTLSGGDMRKVLNTLQSTWLAYRDVTEDNVYTC 382
+ V RL+ I EG MS+ +K ++ S GD+R+ + TLQS + +DN C
Sbjct: 179 AEIQVQRLRTICDAEGTPMSDDELKQVMEYSEGDLRRAVCTLQSLAPILKS-GDDNARNC 237
Query: 381 VGHPLRADIDSIL 343
LR DS+L
Sbjct: 238 Y---LRGSSDSLL 247
>Z70307-13|CAA94339.1| 354|Caenorhabditis elegans Hypothetical
protein C39E9.13 protein.
Length = 354
Score = 68.1 bits (159), Expect = 6e-12
Identities = 30/102 (29%), Positives = 57/102 (55%)
Frame = -2
Query: 750 KQDLNLIILDEADAMTNDAQNALRRIIEKYTENVRFCIICNYLGKIIPALQSRCTRFRFA 571
++ +++L EAD++T DAQ+ LRR +EKY N + + C L +II LQSRC
Sbjct: 128 QRSFKVVVLCEADSLTRDAQHGLRRTMEKYANNCKIVLSCESLSRIIEPLQSRCIIINVP 187
Query: 570 PLKQDQIVPRLQEIVTTEGVKMSEGGMKALLTLSGGDMRKVL 445
+ + L++++ E + E ++ ++ S G++R+ +
Sbjct: 188 APTDEDVTKVLRKVIERESFLLPENVLQKIVEKSEGNLRRAI 229
>Z75532-2|CAA99812.1| 839|Caenorhabditis elegans Hypothetical
protein C54G10.2 protein.
Length = 839
Score = 41.5 bits (93), Expect = 6e-04
Identities = 28/105 (26%), Positives = 54/105 (51%), Gaps = 3/105 (2%)
Frame = -2
Query: 738 NLIILDEADAMT-NDAQNALRRIIEKYTEN-VRFCIICN-YLGKIIPALQSRCTRFRFAP 568
+++I+DE D M+ N+ + + +I+ E+ + ICN I L + C RF
Sbjct: 414 HILIMDEVDGMSGNEDRAGISELIQIIKESKIPIICICNDRQHPKIRTLANYCYDLRFPK 473
Query: 567 LKQDQIVPRLQEIVTTEGVKMSEGGMKALLTLSGGDMRKVLNTLQ 433
+ + I R+ I + E +K+ + + ++ LSG D+R+ + LQ
Sbjct: 474 PRVETIRSRMMTICSQEKMKIGKEELDEIIELSGHDVRQTIYNLQ 518
>Z68879-1|CAA93081.1| 850|Caenorhabditis elegans Hypothetical
protein K08F4.1 protein.
Length = 850
Score = 39.5 bits (88), Expect = 0.003
Identities = 38/111 (34%), Positives = 53/111 (47%), Gaps = 6/111 (5%)
Frame = -2
Query: 732 IILDEADAMTNDAQNALRRIIEKYTEN-VRFCII--CNYLGKIIPALQS-RCTRF--RFA 571
+ILDE D D L R I+ + +R II CN L PAL+ R + +
Sbjct: 395 LILDEIDGTPIDTIRHLVRCIQATGKKAIRRPIIGICNNL--YTPALRDLRGVAWCVQLV 452
Query: 570 PLKQDQIVPRLQEIVTTEGVKMSEGGMKALLTLSGGDMRKVLNTLQSTWLA 418
KQD + RL+EI E ++ ++ L L DMR +NTLQ W+A
Sbjct: 453 ATKQDVLAKRLEEICDRERLRCDLSTLRKLCELCANDMRHSINTLQ--WVA 501
>Z70680-8|CAA94570.2| 349|Caenorhabditis elegans Hypothetical
protein C25G4.7 protein.
Length = 349
Score = 29.1 bits (62), Expect = 3.7
Identities = 13/36 (36%), Positives = 19/36 (52%)
Frame = -2
Query: 663 YTENVRFCIICNYLGKIIPALQSRCTRFRFAPLKQD 556
Y E + F NYLG+++ A + F FA L +D
Sbjct: 281 YVEKLLFMAHTNYLGRLLEACNATIISFHFADLCRD 316
>AL132865-14|CAB60610.1| 363|Caenorhabditis elegans Hypothetical
protein Y62E10A.17 protein.
Length = 363
Score = 29.1 bits (62), Expect = 3.7
Identities = 11/32 (34%), Positives = 20/32 (62%)
Frame = -2
Query: 381 VGHPLRADIDSILNWLLNENDFSACFKSIQDL 286
V H AD D+ L+ L+N+ DF+ C +++ +
Sbjct: 257 VAHEALADEDADLDALMNDKDFTECMSALESV 288
>Z79694-8|CAB01965.1| 872|Caenorhabditis elegans Hypothetical
protein F07A5.7 protein.
Length = 872
Score = 28.7 bits (61), Expect = 4.8
Identities = 22/68 (32%), Positives = 35/68 (51%), Gaps = 4/68 (5%)
Frame = -2
Query: 261 SDILAEVHTIIQRVKLP--PEVLVSLLIKMSDAEARLASGSSERVELAALIASFQIARDQ 88
+D+L EVH Q+V+L V +L ++ +A RL ER +L + + Q+ D
Sbjct: 212 NDLLKEVHD--QKVQLDNLQHVKYTLAQQLEEARRRLEDAERERSQLQSQLHQVQLELDS 269
Query: 87 VK--LDTE 70
V+ LD E
Sbjct: 270 VRTALDEE 277
>Z72506-9|CAA96622.1| 872|Caenorhabditis elegans Hypothetical
protein F07A5.7 protein.
Length = 872
Score = 28.7 bits (61), Expect = 4.8
Identities = 22/68 (32%), Positives = 35/68 (51%), Gaps = 4/68 (5%)
Frame = -2
Query: 261 SDILAEVHTIIQRVKLP--PEVLVSLLIKMSDAEARLASGSSERVELAALIASFQIARDQ 88
+D+L EVH Q+V+L V +L ++ +A RL ER +L + + Q+ D
Sbjct: 212 NDLLKEVHD--QKVQLDNLQHVKYTLAQQLEEARRRLEDAERERSQLQSQLHQVQLELDS 269
Query: 87 VK--LDTE 70
V+ LD E
Sbjct: 270 VRTALDEE 277
>Z69637-7|CAO78728.1| 433|Caenorhabditis elegans Hypothetical
protein F35G2.1b protein.
Length = 433
Score = 28.7 bits (61), Expect = 4.8
Identities = 13/31 (41%), Positives = 19/31 (61%)
Frame = -2
Query: 768 QQGLYLKQDLNLIILDEADAMTNDAQNALRR 676
QQ LY+++ N + D DA+TND + RR
Sbjct: 92 QQALYMQRYTNQTVKDIDDAITNDMEQGGRR 122
>Z69637-1|CAA93467.1| 601|Caenorhabditis elegans Hypothetical
protein F35G2.1a protein.
Length = 601
Score = 28.7 bits (61), Expect = 4.8
Identities = 13/31 (41%), Positives = 19/31 (61%)
Frame = -2
Query: 768 QQGLYLKQDLNLIILDEADAMTNDAQNALRR 676
QQ LY+++ N + D DA+TND + RR
Sbjct: 260 QQALYMQRYTNQTVKDIDDAITNDMEQGGRR 290
>X08068-1|CAA30857.1| 882|Caenorhabditis elegans paramyosin
protein.
Length = 882
Score = 28.7 bits (61), Expect = 4.8
Identities = 22/68 (32%), Positives = 35/68 (51%), Gaps = 4/68 (5%)
Frame = -2
Query: 261 SDILAEVHTIIQRVKLP--PEVLVSLLIKMSDAEARLASGSSERVELAALIASFQIARDQ 88
+D+L EVH Q+V+L V +L ++ +A RL ER +L + + Q+ D
Sbjct: 228 NDLLKEVHD--QKVQLDNLQHVKYTLAQQLEEARRRLEDAERERSQLQSQLHQVQLELDS 285
Query: 87 VK--LDTE 70
V+ LD E
Sbjct: 286 VRTALDEE 293
>Z81058-7|CAB02920.1| 1011|Caenorhabditis elegans Hypothetical
protein F11E6.7 protein.
Length = 1011
Score = 27.9 bits (59), Expect = 8.5
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = +2
Query: 494 PPSDIFTPSVVTISCNLGTI*SCLRGAKRNRVH 592
PP TPS++ + + T S + KRNRVH
Sbjct: 566 PPKTPRTPSILRVGKRMSTSSSPMTERKRNRVH 598
>Z47070-8|CAA87345.1| 5198|Caenorhabditis elegans Hypothetical protein
F15G9.4b protein.
Length = 5198
Score = 27.9 bits (59), Expect = 8.5
Identities = 18/65 (27%), Positives = 28/65 (43%)
Frame = -2
Query: 759 LYLKQDLNLIILDEADAMTNDAQNALRRIIEKYTENVRFCIICNYLGKIIPALQSRCTRF 580
++ K D ++ D + N++ L +EKY E V C+ N +GK Q
Sbjct: 4782 VWTKNDQKMLDDDAIYVLPNNSLVLLN--VEKYDEGVYKCVASNSIGKAFDDTQLNVYEG 4839
Query: 579 RFAPL 565
F PL
Sbjct: 4840 DFLPL 4844
>Z47068-9|CAA87336.1| 5198|Caenorhabditis elegans Hypothetical protein
F15G9.4b protein.
Length = 5198
Score = 27.9 bits (59), Expect = 8.5
Identities = 18/65 (27%), Positives = 28/65 (43%)
Frame = -2
Query: 759 LYLKQDLNLIILDEADAMTNDAQNALRRIIEKYTENVRFCIICNYLGKIIPALQSRCTRF 580
++ K D ++ D + N++ L +EKY E V C+ N +GK Q
Sbjct: 4782 VWTKNDQKMLDDDAIYVLPNNSLVLLN--VEKYDEGVYKCVASNSIGKAFDDTQLNVYEG 4839
Query: 579 RFAPL 565
F PL
Sbjct: 4840 DFLPL 4844
>Z46794-12|CAA86778.2| 1468|Caenorhabditis elegans Hypothetical
protein R06F6.8a protein.
Length = 1468
Score = 27.9 bits (59), Expect = 8.5
Identities = 11/34 (32%), Positives = 21/34 (61%)
Frame = +2
Query: 230 MIVWTSANISLSANPFAIFKSCMDLKQAEKSFSF 331
+ +W + ++ +P A+F+ C+ LKQ E + SF
Sbjct: 892 LALWRTL-FDVTGSPNALFEECLQLKQLENAASF 924
>Z46794-11|CAA86785.2| 1470|Caenorhabditis elegans Hypothetical
protein R06F6.8b protein.
Length = 1470
Score = 27.9 bits (59), Expect = 8.5
Identities = 11/34 (32%), Positives = 21/34 (61%)
Frame = +2
Query: 230 MIVWTSANISLSANPFAIFKSCMDLKQAEKSFSF 331
+ +W + ++ +P A+F+ C+ LKQ E + SF
Sbjct: 892 LALWRTL-FDVTGSPNALFEECLQLKQLENAASF 924
>AF074901-1|AAC26792.1| 5198|Caenorhabditis elegans hemicentin
precursor protein.
Length = 5198
Score = 27.9 bits (59), Expect = 8.5
Identities = 18/65 (27%), Positives = 28/65 (43%)
Frame = -2
Query: 759 LYLKQDLNLIILDEADAMTNDAQNALRRIIEKYTENVRFCIICNYLGKIIPALQSRCTRF 580
++ K D ++ D + N++ L +EKY E V C+ N +GK Q
Sbjct: 4782 VWTKNDQKMLDDDAIYVLPNNSLVLLN--VEKYDEGVYKCVASNSIGKAFDDTQLNVYEG 4839
Query: 579 RFAPL 565
F PL
Sbjct: 4840 DFLPL 4844
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,052,677
Number of Sequences: 27780
Number of extensions: 318527
Number of successful extensions: 854
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 812
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 854
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1851132448
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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