Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte16e22
         (772 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    31   0.016
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          26   0.45 
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     25   1.0  
AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex det...    23   4.2  
AJ555537-1|CAD88245.1|  210|Apis mellifera putative chemosensory...    22   7.3  

>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 30.7 bits (66), Expect = 0.016
 Identities = 14/41 (34%), Positives = 23/41 (56%)
 Frame = -2

Query: 198 VSLLIKMSDAEARLASGSSERVELAALIASFQIARDQVKLD 76
           V++L  + DA ARL +G   R ++  L+   Q  R+Q + D
Sbjct: 656 VTILALVRDATARLPNGEGTRADICQLLKDSQYIREQTESD 696


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 25.8 bits (54), Expect = 0.45
 Identities = 21/87 (24%), Positives = 33/87 (37%)
 Frame = -1

Query: 709 YDK*RSECTKENYREVHRECKVLHNMQLPG*NYSSITVAVYAISFCPSQARSNCAEITRN 530
           YD+ + E + ENY   H+E  +  + Q      +  T     +  C  Q  SN + IT  
Sbjct: 176 YDRYKEEESNENYNWEHKETHI--DWQPEDEECTEATAGAVVLETC--QRNSNNSTITAG 231

Query: 529 CHNGRCKNVRGRNEGASHLVRG*YEKG 449
             N    N    N   ++   G  + G
Sbjct: 232 NANTNASNNNNNNNNNNNNNNGANDNG 258


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 24.6 bits (51), Expect = 1.0
 Identities = 14/39 (35%), Positives = 21/39 (53%), Gaps = 5/39 (12%)
 Frame = -2

Query: 612 IPALQSRCTRFRFAPLKQDQI----VPRLQEI-VTTEGV 511
           +P + S C    + PLK+D      VP L+E+   TEG+
Sbjct: 185 VPTVTSACVGSAYTPLKEDHDDHYGVPTLEELGFDTEGL 223


>AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex
           determiner protein.
          Length = 418

 Score = 22.6 bits (46), Expect = 4.2
 Identities = 8/13 (61%), Positives = 12/13 (92%)
 Frame = +1

Query: 556 ILLERGKTKSRTP 594
           ++LER KTKS++P
Sbjct: 78  LVLERSKTKSKSP 90


>AJ555537-1|CAD88245.1|  210|Apis mellifera putative chemosensory
           receptor 2 protein.
          Length = 210

 Score = 21.8 bits (44), Expect = 7.3
 Identities = 12/31 (38%), Positives = 15/31 (48%)
 Frame = +1

Query: 436 KRIQNLSHITPGQGEKRLHSAL*HFYTFRCD 528
           K  + L  +TP QGE  L   L   Y+ R D
Sbjct: 39  KEQEPLPPVTPPQGENMLDMDLRGIYSNRTD 69


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 196,701
Number of Sequences: 438
Number of extensions: 3889
Number of successful extensions: 13
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24154023
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)