Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte16e21
         (536 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC12C2.01c ||SPBC17F3.03c|sequence orphan|Schizosaccharomyces ...    27   2.3  
SPCC576.17c |||membrane transporter|Schizosaccharomyces pombe|ch...    27   2.3  
SPCC1450.14c |ero12||ER oxidoreductin Ero1b|Schizosaccharomyces ...    26   3.1  
SPBC19F8.04c |||nuclease|Schizosaccharomyces pombe|chr 2|||Manual      26   3.1  
SPAC1F3.03 |||Lgl family protein|Schizosaccharomyces pombe|chr 1...    26   4.1  
SPCC1393.07c |mug4||sequence orphan|Schizosaccharomyces pombe|ch...    25   5.4  
SPAC56F8.12 |||conserved fungal protein|Schizosaccharomyces pomb...    25   9.5  
SPAC4G9.09c |arg11||N-acetyl-gamma-glutamyl-phosphate reductase/...    25   9.5  
SPAC31A2.15c |dcc1||DNA replication factor C complex subunit Dcc...    25   9.5  

>SPBC12C2.01c ||SPBC17F3.03c|sequence orphan|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 318

 Score = 26.6 bits (56), Expect = 2.3
 Identities = 15/35 (42%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
 Frame = +3

Query: 168 QTRKFTLFFLIKHLE--ALC*VFEI*TCFLFWILR 266
           + R  T F+L+KH+E  AL   +E+ T  L W LR
Sbjct: 210 KNRLRTSFYLLKHMELLALPASYELKTTLLEWFLR 244


>SPCC576.17c |||membrane transporter|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 525

 Score = 26.6 bits (56), Expect = 2.3
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = +2

Query: 389 FTCHHFVTSLPMSVKEIWHISTLLTLSGNGFGVL 490
           F   +F   +  SV E+WH+S+ ++L G    VL
Sbjct: 95  FWTPNFYPGVQDSVMELWHLSSQVSLLGQSMFVL 128


>SPCC1450.14c |ero12||ER oxidoreductin Ero1b|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 571

 Score = 26.2 bits (55), Expect = 3.1
 Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
 Frame = +2

Query: 140 LNFSCTSIVS-NEKVYPFFFD*TFRSFVLSFRNLNMF 247
           LN S + I + N +V P  FD T +S  + F  LN+F
Sbjct: 52  LNSSYSDIENLNSRVSPLLFDLTEKSDYMRFYRLNLF 88


>SPBC19F8.04c |||nuclease|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 230

 Score = 26.2 bits (55), Expect = 3.1
 Identities = 15/36 (41%), Positives = 22/36 (61%)
 Frame = +1

Query: 58  RPRRATNNNTDHTNMYLNST**ESRRYLEFFMYIDR 165
           R RR +N +T   N YLN++  E+R+Y   F Y+ R
Sbjct: 29  RFRRISNASTIPKN-YLNNSTVENRKYKTMFGYVTR 63


>SPAC1F3.03 |||Lgl family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1004

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 12/38 (31%), Positives = 18/38 (47%)
 Frame = +3

Query: 243 CFLFWILRITTVITIAPVQATMLQNWISIGDHSSCLQG 356
           CFL    R+    T+       +++ IS+  H SCL G
Sbjct: 431 CFLASDFRVIAFQTVTKKVWNQIEDTISVNSHYSCLFG 468


>SPCC1393.07c |mug4||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 845

 Score = 25.4 bits (53), Expect = 5.4
 Identities = 13/29 (44%), Positives = 19/29 (65%), Gaps = 2/29 (6%)
 Frame = +2

Query: 413 SLPMSVKEIWHISTLLTLS-GNG-FGVLL 493
           SLP+S   +W  S LL++  GNG F ++L
Sbjct: 522 SLPLSATYVWIASALLSVQPGNGSFNIML 550


>SPAC56F8.12 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 394

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 8/15 (53%), Positives = 12/15 (80%)
 Frame = +2

Query: 404 FVTSLPMSVKEIWHI 448
           F T+LP+S+  IWH+
Sbjct: 138 FQTALPISIAIIWHV 152


>SPAC4G9.09c |arg11||N-acetyl-gamma-glutamyl-phosphate
           reductase/acetylglutamate kinase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 885

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = +1

Query: 295 SKPRCYRTGFRSGTTPL 345
           S P CY TG + G TP+
Sbjct: 699 SNPGCYATGSQVGLTPI 715


>SPAC31A2.15c |dcc1||DNA replication factor C complex subunit Dcc1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 349

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = +2

Query: 131 DGILNFSCTSIVSNEKVYPFFF 196
           D +LN +C S +  E++Y F F
Sbjct: 86  DWVLNDTCYSFLEVERIYGFIF 107


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,253,169
Number of Sequences: 5004
Number of extensions: 44412
Number of successful extensions: 101
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 100
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 101
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 222442660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)