Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte16e21
         (536 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_0650 + 30872350-30872736,30873388-30873639,30873723-308738...    28   5.4  

>01_06_0650 +
           30872350-30872736,30873388-30873639,30873723-30873818,
           30874005-30874173,30874452-30874552,30874910-30875002,
           30876018-30876089,30876509-30876628,30876709-30876759,
           30877621-30877809,30878099-30878266
          Length = 565

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 20/57 (35%), Positives = 25/57 (43%), Gaps = 3/57 (5%)
 Frame = +2

Query: 2   QETYSRLVLNIGISDTKPLDPEGLRII---TRTIPICTLIPLDKSRDGILNFSCTSI 163
           +E+   L   IGI D  P DPE L I+      +P+   I LD   D       TSI
Sbjct: 106 KESEIELYARIGIDDDTPEDPEVLNIVEILKLNVPMAMKIALDGLLDSNYKTRDTSI 162


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,574,883
Number of Sequences: 37544
Number of extensions: 253309
Number of successful extensions: 537
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 526
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 537
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1186491600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)