Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte16e20
(734 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC162.08c |nup211||nuclear pore complex associated protein|Sch... 36 0.006
SPCC962.02c |bir1|cut17, pbh1, SPCP31B10.10c|survivin homolog|Sc... 31 0.23
SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyce... 30 0.30
SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces... 28 1.2
SPAC1687.23c |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 27 2.1
SPAC3A12.11c |cwf2|prp3|RNA-binding protein Cwf2|Schizosaccharom... 26 6.4
SPAC3C7.12 |tip1|noc1|CLIP170 family protein Tip1|Schizosaccharo... 26 6.4
SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces... 25 8.5
SPBC11B10.01 |alg2|SPBC32H8.14|mannosyltransferase complex subun... 25 8.5
>SPCC162.08c |nup211||nuclear pore complex associated
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1837
Score = 35.9 bits (79), Expect = 0.006
Identities = 30/138 (21%), Positives = 64/138 (46%)
Frame = -3
Query: 699 LHQANMIREKHRDLREGYDKLQRITAKGPYNKEFIEPKVQGLWRMAAAANFTVDELASLK 520
L +N++ + + G + + ++ Y K+ E Q + R+ + N ++E A+L+
Sbjct: 386 LKYSNLLNNSMKGFK-GQSSVSDLYSERLYYKQKYEQTCQEVERLQRSYNHVMEE-ANLQ 443
Query: 519 VELQHYESRLLKLRHLQADHVSNSEKYNTKVAGAGEKMNHFEDQEQTIKKHSRKVEKMHA 340
L + + + H+Q + V+ SE+Y + + + +E E K + E H
Sbjct: 444 HPL--VKEQFKRFAHMQREIVAMSEQYQKSLEDCQKAKSRYEQLETLFK--DKCTENKHY 499
Query: 339 DIETRILERHTEL*I*EL 286
+ ET+ L R ++ + EL
Sbjct: 500 EQETKDLARQVQVLLHEL 517
>SPCC962.02c |bir1|cut17, pbh1, SPCP31B10.10c|survivin
homolog|Schizosaccharomyces pombe|chr 3|||Manual
Length = 997
Score = 30.7 bits (66), Expect = 0.23
Identities = 16/54 (29%), Positives = 29/54 (53%), Gaps = 2/54 (3%)
Frame = -3
Query: 459 VSNSEKYNTKVAGAGEKMNHFEDQEQTIKKHSRKVEK--MHADIETRILERHTE 304
VS S++ ++ V+ G++ NH E Q +KVEK H +++ +E T+
Sbjct: 410 VSKSKEISSSVSSVGKEQNHTEKQVAIETPEQQKVEKEDEHLNLQGSFIEESTK 463
>SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2104
Score = 30.3 bits (65), Expect = 0.30
Identities = 38/144 (26%), Positives = 64/144 (44%), Gaps = 14/144 (9%)
Frame = -3
Query: 732 SEQXNEIXKDYL-----------HQANM---IREKHRDLREGYDKLQRITAKGPYNKEFI 595
S + E+ KDYL H +N+ I EK+ ++RE +KL R+ + +
Sbjct: 964 SSKYKELEKDYLNIMADYQHSSQHLSNLEKAINEKNLNIRELNEKLMRLDDELLLKQRSY 1023
Query: 594 EPKVQGLWRMAAAANFTVDELASLKVELQHYESRLLKLRHLQADHVSNSEKYNTKVAGAG 415
+ KVQ L +E ASLK + + YES+L L ++ S K ++
Sbjct: 1024 DTKVQELR----------EENASLKDQCRTYESQLASLVSKYSETESELNKKEAELVIFQ 1073
Query: 414 EKMNHFEDQEQTIKKHSRKVEKMH 343
+++ + DQ + K + EK H
Sbjct: 1074 KEITEYRDQ---LHKAFQNPEKTH 1094
Score = 26.2 bits (55), Expect = 4.8
Identities = 14/62 (22%), Positives = 29/62 (46%)
Frame = -3
Query: 486 KLRHLQADHVSNSEKYNTKVAGAGEKMNHFEDQEQTIKKHSRKVEKMHADIETRILERHT 307
KL L + + Y+TKV E+ +DQ +T + + +++ E+ + ++
Sbjct: 1008 KLMRLDDELLLKQRSYDTKVQELREENASLKDQCRTYESQLASLVSKYSETESELNKKEA 1067
Query: 306 EL 301
EL
Sbjct: 1068 EL 1069
>SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1526
Score = 28.3 bits (60), Expect = 1.2
Identities = 23/121 (19%), Positives = 52/121 (42%), Gaps = 3/121 (2%)
Frame = -3
Query: 681 IREKHRDLREGYDKLQRITAKGPYNKEFIEPKVQGLWRMAAAANFTVDELASLKVELQHY 502
+ +KHRDL ++ L R +A + + L ++ V+EL+ ++
Sbjct: 1194 LSKKHRDLTFNHESLLRQSASYKEKLSLASSENKDLSNKVSSLTKQVNELSPKASKVPEL 1253
Query: 501 ESRLLKLRH--LQADHVSNSEKYNTKVAGA-GEKMNHFEDQEQTIKKHSRKVEKMHADIE 331
E ++ L H Q EK +A E++ + + ++ +K + +K+ +++
Sbjct: 1254 ERKITNLMHEYSQLGKTFEDEKRKALIASRDNEELRSLKSELESKRKLEVEYQKVLEEVK 1313
Query: 330 T 328
T
Sbjct: 1314 T 1314
>SPAC1687.23c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 104
Score = 27.5 bits (58), Expect = 2.1
Identities = 13/27 (48%), Positives = 18/27 (66%), Gaps = 2/27 (7%)
Frame = +2
Query: 251 C*QSSMMVNNGKSS--QIYNSVCRSNI 325
C ++S VNNG + QIY S+C+S I
Sbjct: 39 CCRNSYTVNNGTFTGRQIYTSICKSRI 65
>SPAC3A12.11c |cwf2|prp3|RNA-binding protein
Cwf2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 388
Score = 25.8 bits (54), Expect = 6.4
Identities = 12/36 (33%), Positives = 18/36 (50%)
Frame = -3
Query: 432 KVAGAGEKMNHFEDQEQTIKKHSRKVEKMHADIETR 325
K+ GEK +E+ + +K RK + IETR
Sbjct: 22 KILVEGEKSKEYEETPRKVKIVKRKKQPARKQIETR 57
>SPAC3C7.12 |tip1|noc1|CLIP170 family protein
Tip1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 461
Score = 25.8 bits (54), Expect = 6.4
Identities = 20/93 (21%), Positives = 46/93 (49%)
Frame = -3
Query: 660 LREGYDKLQRITAKGPYNKEFIEPKVQGLWRMAAAANFTVDELASLKVELQHYESRLLKL 481
LRE +KLQ ++ + + +I + L R + ++L++ E ++ SR+ +L
Sbjct: 336 LREKVEKLQALSDEKDF---YISKLEKSLDRNDTTPVPSDEKLSNYAAEKENLVSRISEL 392
Query: 480 RHLQADHVSNSEKYNTKVAGAGEKMNHFEDQEQ 382
H N+E+ N +++ A ++ ++ E+
Sbjct: 393 EHTIEQLTINNERDNERMSPAEFELETTQEVEE 425
>SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1727
Score = 25.4 bits (53), Expect = 8.5
Identities = 26/137 (18%), Positives = 62/137 (45%), Gaps = 2/137 (1%)
Frame = -3
Query: 732 SEQXNEIXKDYLHQANMIREKHRDLREGYDKLQRITAKGPYNKEFIEPKVQG--LWRMAA 559
SE E +YL+ ++ E ++ LRE ++ + + + E ++ + L +
Sbjct: 1219 SESVGE-RSNYLNMVALLNESNKSLRENLERNEEVITELREKIETLKTDLANFRLNKEQL 1277
Query: 558 AANFTVDELASLKVELQHYESRLLKLRHLQADHVSNSEKYNTKVAGAGEKMNHFEDQEQT 379
+ ++ A K+E + E + RH Q +S + +T + A N +E
Sbjct: 1278 ESQLQTEKAAVKKLENSNEEYK----RHNQEILLSLNSSTSTS-SDASRLKNELVSKENL 1332
Query: 378 IKKHSRKVEKMHADIET 328
I++ ++++ + +++ET
Sbjct: 1333 IEELNQEIGHLKSELET 1349
>SPBC11B10.01 |alg2|SPBC32H8.14|mannosyltransferase complex subunit
Alg2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 511
Score = 25.4 bits (53), Expect = 8.5
Identities = 13/40 (32%), Positives = 20/40 (50%)
Frame = +1
Query: 556 GSCHSPQTLHFGFYKFFVVWTFSSNPL*FVISFSQISVLF 675
G+C T+ F K + T+SS L F++ +SV F
Sbjct: 460 GTCIIAATVPFAIIKLYFAQTYSSVKLGFMLGTCIVSVSF 499
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,769,926
Number of Sequences: 5004
Number of extensions: 53411
Number of successful extensions: 160
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 151
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 158
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 347244562
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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