Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte16e20
(734 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_06_0318 + 33103467-33104232,33104332-33105548 33 0.24
02_02_0520 + 11152718-11153600,11153736-11153917,11154160-111542... 33 0.24
12_02_1286 - 27555143-27555191,27555290-27555511,27555911-275561... 31 0.95
05_05_0348 + 24271764-24271898,24273055-24273144,24273205-242733... 30 1.7
12_02_1212 - 27043723-27044241,27044483-27044850,27045513-27045753 30 2.2
01_05_0734 + 24735939-24736790 30 2.2
07_01_1193 - 11318111-11318318,11318790-11318884,11320097-113201... 29 2.9
02_05_1278 - 35416451-35416458,35416777-35416969,35416970-354170... 29 5.1
07_03_1248 - 25165929-25166891,25169159-25169473 28 6.7
07_03_0541 + 19254455-19254666,19255053-19255207,19255420-192554... 28 6.7
01_06_0554 + 30179641-30179658,30179725-30180126,30180580-301808... 28 6.7
09_02_0293 - 7015641-7015647,7015731-7015841,7015932-7016105,701... 28 8.8
06_03_0742 + 24027506-24027721,24028835-24029004,24029893-240300... 28 8.8
01_05_0758 + 24954701-24954793,24954907-24955086,24955676-249558... 28 8.8
>03_06_0318 + 33103467-33104232,33104332-33105548
Length = 660
Score = 33.1 bits (72), Expect = 0.24
Identities = 21/78 (26%), Positives = 41/78 (52%)
Frame = -3
Query: 582 QGLWRMAAAANFTVDELASLKVELQHYESRLLKLRHLQADHVSNSEKYNTKVAGAGEKMN 403
+ L +MAA E+ K +L+ +S + ++R A +S SE+ T ++ ++
Sbjct: 434 EDLQKMAAMVQELEAEIEGYKTKLRD-QSLVNEIR--DAMRISRSEECETSMSRTARSLS 490
Query: 402 HFEDQEQTIKKHSRKVEK 349
FED++ I KH +K+ +
Sbjct: 491 LFEDEKAYISKHLKKLRQ 508
>02_02_0520 +
11152718-11153600,11153736-11153917,11154160-11154249,
11154343-11154627,11154776-11154994,11155112-11155339
Length = 628
Score = 33.1 bits (72), Expect = 0.24
Identities = 21/84 (25%), Positives = 39/84 (46%), Gaps = 3/84 (3%)
Frame = -3
Query: 543 VDELASLKVELQHYESRLLKLRHLQADHVSNSEKYNTKVAGAGEK---MNHFEDQEQTIK 373
+DE L++E+Q RLL ++H++ + V ++ + EK M + E QT+
Sbjct: 402 LDEKQKLELEIQQLRGRLLVVQHMEGEGVDVKKRTDELTEELNEKIEEMEYMEGLNQTLI 461
Query: 372 KHSRKVEKMHADIETRILERHTEL 301
RK D + ++ +EL
Sbjct: 462 IKERKTNDELQDAKKALISGLSEL 485
>12_02_1286 - 27555143-27555191,27555290-27555511,27555911-27556162,
27556683-27557062,27557202-27557311,27557864-27558033,
27558236-27558444,27558528-27558617,27559125-27559264,
27559356-27559463,27559626-27559716,27560736-27560852,
27561497-27561767,27561892-27562193,27562400-27562469,
27563464-27563702,27564613-27564846,27564943-27565179,
27565276-27565734
Length = 1249
Score = 31.1 bits (67), Expect = 0.95
Identities = 28/103 (27%), Positives = 49/103 (47%), Gaps = 14/103 (13%)
Frame = -3
Query: 567 MAAAANFTVDELA-SLKVELQHYESRLLKL---RHLQADHVSNSEKY----------NTK 430
MAA +N D + S K + YES + +L R LQ ++ SEK N +
Sbjct: 696 MAARSNKWDDSIIESWKKKKNQYESEMSELGSPRELQRKELAVSEKITGLEKKLHYLNVE 755
Query: 429 VAGAGEKMNHFEDQEQTIKKHSRKVEKMHADIETRILERHTEL 301
EK+ E ++ I++ ++E + ++ETRI ++ E+
Sbjct: 756 ENNLREKLRRLESEKSNIEEEIDRLEPVKEELETRIGKKEREV 798
>05_05_0348 + 24271764-24271898,24273055-24273144,24273205-24273303,
24273725-24273826,24273912-24274088,24274193-24274398,
24274491-24274575,24274641-24274798,24274873-24274948,
24275117-24275245,24275313-24275457,24275561-24275691,
24276183-24276335,24276447-24276636,24277006-24277139,
24277248-24277406,24277659-24277964,24278040-24278216,
24278446-24278529,24278592-24278822,24278913-24279002,
24279090-24279211,24279293-24279448,24279477-24279635,
24279705-24279765,24280004-24280138,24280384-24280471,
24280548-24280620,24280883-24280994,24281691-24281711
Length = 1327
Score = 30.3 bits (65), Expect = 1.7
Identities = 30/125 (24%), Positives = 56/125 (44%), Gaps = 1/125 (0%)
Frame = -3
Query: 720 NEIXKDYLHQANMIREKHRDLREGYDKLQRITAKGPYNKEFIEPKVQGLWRMAAAANFTV 541
N++ K + Q N +REK D ++GY L+ AK + E + K + + M A ++
Sbjct: 782 NDLNK-LVDQLNRLREKINDAKKGYRALE--DAKSRFEMELAKAKKE-VESMNAQFSYNE 837
Query: 540 DELASLKVELQHYESRLLKLRHLQADHVSNSEKYNTKVAGAGEKM-NHFEDQEQTIKKHS 364
L SLK + ++ L D +S + ++A K+ + + +Q I+
Sbjct: 838 KRLDSLKAASHPKADEVRRMEELD-DIISAEQAELNRLAKCSSKLKDQASELQQKIENAG 896
Query: 363 RKVEK 349
+V K
Sbjct: 897 GQVLK 901
>12_02_1212 - 27043723-27044241,27044483-27044850,27045513-27045753
Length = 375
Score = 29.9 bits (64), Expect = 2.2
Identities = 17/52 (32%), Positives = 23/52 (44%)
Frame = -3
Query: 480 RHLQADHVSNSEKYNTKVAGAGEKMNHFEDQEQTIKKHSRKVEKMHADIETR 325
RHLQ H + S A + ++H D E T + HS + ADI R
Sbjct: 265 RHLQ--HYAGSASMAAAAANIVDVIDHSSDAETTTRSHSHSQSHLVADIRHR 314
>01_05_0734 + 24735939-24736790
Length = 283
Score = 29.9 bits (64), Expect = 2.2
Identities = 18/42 (42%), Positives = 23/42 (54%)
Frame = -3
Query: 678 REKHRDLREGYDKLQRITAKGPYNKEFIEPKVQGLWRMAAAA 553
R K R+LRE K R A G +++ E V G W+ AAAA
Sbjct: 225 RRKARELREAAAKATR--APGGPSRQAFEAVVGGAWKKAAAA 264
>07_01_1193 -
11318111-11318318,11318790-11318884,11320097-11320150,
11320311-11320648,11323419-11323704
Length = 326
Score = 29.5 bits (63), Expect = 2.9
Identities = 20/80 (25%), Positives = 42/80 (52%)
Frame = -3
Query: 555 ANFTVDELASLKVELQHYESRLLKLRHLQADHVSNSEKYNTKVAGAGEKMNHFEDQEQTI 376
AN + +E+ L++ELQ E + +++ L+A+ S SEK + + E + E +
Sbjct: 122 ANTSREEVEKLQIELQGKEDKSKEVKKLRAELASLSEKMKKLKSESEEHERQRLEAEAHV 181
Query: 375 KKHSRKVEKMHADIETRILE 316
++ E++ + + R+LE
Sbjct: 182 NALQKQSEELLLEYD-RLLE 200
>02_05_1278 -
35416451-35416458,35416777-35416969,35416970-35417056,
35417851-35417892,35418542-35418617,35418954-35421589
Length = 1013
Score = 28.7 bits (61), Expect = 5.1
Identities = 14/24 (58%), Positives = 16/24 (66%)
Frame = +2
Query: 542 TVKFAAAAIRHRPCTLGSINSLLY 613
T AAAAIR RP S+N+LLY
Sbjct: 58 TSGLAAAAIRFRPADPASLNALLY 81
>07_03_1248 - 25165929-25166891,25169159-25169473
Length = 425
Score = 28.3 bits (60), Expect = 6.7
Identities = 17/73 (23%), Positives = 25/73 (34%)
Frame = -3
Query: 561 AAANFTVDELASLKVELQHYESRLLKLRHLQADHVSNSEKYNTKVAGAGEKMNHFEDQEQ 382
A+ N D+ + L HY+ LL HL V + K+ G N
Sbjct: 173 ASPNSNYDQDLFGSISLPHYQDMLLNQNHLSVHRVEPAHDQLEKIKDDGSNDNADSSHSN 232
Query: 381 TIKKHSRKVEKMH 343
++ S V H
Sbjct: 233 YVQDSSGSVSLQH 245
>07_03_0541 +
19254455-19254666,19255053-19255207,19255420-19255496,
19255572-19255679
Length = 183
Score = 28.3 bits (60), Expect = 6.7
Identities = 21/88 (23%), Positives = 44/88 (50%)
Frame = -3
Query: 588 KVQGLWRMAAAANFTVDELASLKVELQHYESRLLKLRHLQADHVSNSEKYNTKVAGAGEK 409
+VQG + A + + ++A+LK E+Q ++RH + H+ + + K G E
Sbjct: 35 QVQGFTQDLARSAVDLQQVAALKAEIQ-------EIRH-ETQHLRSGIEVEKK--GYAES 84
Query: 408 MNHFEDQEQTIKKHSRKVEKMHADIETR 325
++ ++ + + +VEK+ A+ E R
Sbjct: 85 YEQGQEMQKKLISVASEVEKLRAEAEKR 112
>01_06_0554 +
30179641-30179658,30179725-30180126,30180580-30180892,
30180966-30181358,30181442-30182427
Length = 703
Score = 28.3 bits (60), Expect = 6.7
Identities = 19/73 (26%), Positives = 30/73 (41%)
Frame = -3
Query: 540 DELASLKVELQHYESRLLKLRHLQADHVSNSEKYNTKVAGAGEKMNHFEDQEQTIKKHSR 361
DE+ L+ L+ + + KL H A+H S +K + E M +E +K
Sbjct: 607 DEITGLQQSLEMKKDEMQKLAHQVAEHESVFQKSLMERLRIKEVMKGYEQTLAEVKVQLT 666
Query: 360 KVEKMHADIETRI 322
E DIE +
Sbjct: 667 STEVGSIDIEALV 679
>09_02_0293 -
7015641-7015647,7015731-7015841,7015932-7016105,
7016210-7016855,7017106-7017235
Length = 355
Score = 27.9 bits (59), Expect = 8.8
Identities = 14/52 (26%), Positives = 28/52 (53%)
Frame = -3
Query: 642 KLQRITAKGPYNKEFIEPKVQGLWRMAAAANFTVDELASLKVELQHYESRLL 487
++QR +G ++ FI+P+ + + T D L L ++ QHY++ +L
Sbjct: 261 EIQRARRRGVFDTRFIDPRKVNVTMLDQYPQATEDNLVHL-LKAQHYKTFIL 311
>06_03_0742 + 24027506-24027721,24028835-24029004,24029893-24030052,
24030162-24030455,24031490-24031717,24031827-24032006,
24032079-24032238,24032591-24032617,24033426-24033613,
24034269-24034532,24035123-24035218,24035311-24035399,
24035473-24035620,24035842-24036051,24036141-24036440,
24037906-24038248,24038747-24038952,24039071-24039273,
24040021-24040117,24040148-24040222,24040328-24040602,
24041116-24041256,24041469-24042339,24042481-24042520,
24042605-24043050
Length = 1808
Score = 27.9 bits (59), Expect = 8.8
Identities = 16/56 (28%), Positives = 33/56 (58%)
Frame = +1
Query: 100 HFLYNGIQF*SHFKSVQIQIFNLFLSIIAKRFILSIFNIGNAINYQ*FYDLLTVID 267
H+ G+ F H+ ++Q Q ++ L+ IA+R S+F + +N++ F+ L+ +D
Sbjct: 1623 HYESTGLNFEVHY-ALQEQP-HILLAQIAQRTARSVFVKASGVNFEVFHKLVDYLD 1676
>01_05_0758 +
24954701-24954793,24954907-24955086,24955676-24955870,
24955982-24956089,24956211-24956288,24956383-24956464,
24956624-24956783,24956877-24957179,24957295-24957513,
24957598-24958057,24958175-24958240,24958332-24958511
Length = 707
Score = 27.9 bits (59), Expect = 8.8
Identities = 20/73 (27%), Positives = 31/73 (42%), Gaps = 1/73 (1%)
Frame = -3
Query: 642 KLQRITAKGPYNKEFIEPKVQGLWRMAAAANFTVDELASLKVELQHY-ESRLLKLRHLQA 466
K++ + K P NK+ I K + + + +N LKV+L Y E +
Sbjct: 152 KIKVVVRKRPLNKKEISKKEEDIIDIEQQSNSLTVHETKLKVDLTEYVEKHEFVFDAVLD 211
Query: 465 DHVSNSEKYNTKV 427
+ VSN E Y V
Sbjct: 212 EDVSNDEVYRETV 224
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,967,630
Number of Sequences: 37544
Number of extensions: 312428
Number of successful extensions: 838
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 808
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 837
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1933531792
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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