Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte16e20
(734 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
M63959-1|AAA51553.1| 357|Homo sapiens alpha-2-macroglobulin rec... 71 3e-12
BC112067-1|AAI12068.1| 357|Homo sapiens low density lipoprotein... 71 3e-12
BC105074-1|AAI05075.1| 357|Homo sapiens low density lipoprotein... 71 3e-12
AL590235-1|CAM21451.1| 357|Homo sapiens low density lipoprotein... 71 3e-12
AK222504-1|BAD96224.1| 357|Homo sapiens low density lipoprotein... 71 3e-12
AF035767-1|AAC67373.1| 357|Homo sapiens lipoprotein receptor as... 71 3e-12
AK222527-1|BAD96247.1| 357|Homo sapiens low density lipoprotein... 70 8e-12
AB023217-1|BAA76844.2| 1956|Homo sapiens KIAA1000 protein protein. 38 0.049
X58677-1|CAA41528.1| 608|Homo sapiens hemidesmosomal plaque pr... 34 0.46
M63618-1|AAA35606.1| 2095|Homo sapiens bullous pemphigoid antige... 34 0.46
M22942-1|AAA35538.1| 664|Homo sapiens protein ( Human bullous p... 34 0.46
L11690-1|AAA52288.1| 2649|Homo sapiens bullous pemphigoid antige... 34 0.46
AL096710-6|CAI22047.1| 2649|Homo sapiens dystonin protein. 34 0.46
AK025690-1|BAB15219.1| 746|Homo sapiens protein ( Homo sapiens ... 33 1.1
AL031283-3|CAI21424.1| 316|Homo sapiens forkhead-associated (FH... 32 2.5
AL031283-1|CAI21423.1| 445|Homo sapiens forkhead-associated (FH... 32 2.5
BC028423-1|AAH28423.1| 1022|Homo sapiens PMFBP1 protein protein. 31 3.2
AY154468-1|AAO18164.1| 1043|Homo sapiens NALP13 protein. 31 4.3
AF034802-1|AAC26103.1| 1005|Homo sapiens liprin-beta1 protein. 31 4.3
AK093104-1|BAC04058.1| 371|Homo sapiens protein ( Homo sapiens ... 31 5.7
AF362887-1|AAK51964.1| 142|Homo sapiens tropomyosin 4-anaplasti... 31 5.7
BC146604-1|AAI46605.1| 974|Homo sapiens C14orf49 protein protein. 30 9.9
BC115701-1|AAI15702.1| 828|Homo sapiens SLMAP protein protein. 30 9.9
BC028119-1|AAH28119.1| 391|Homo sapiens testis expressed 9 prot... 30 9.9
AY358410-1|AAQ88776.1| 296|Homo sapiens SLAP protein. 30 9.9
AL590431-10|CAH71268.1| 247|Homo sapiens tropomyosin 3 protein. 30 9.9
AK131436-1|BAD18582.1| 904|Homo sapiens protein ( Homo sapiens ... 30 9.9
AK124200-1|BAC85803.1| 506|Homo sapiens protein ( Homo sapiens ... 30 9.9
AK098471-1|BAC05312.1| 489|Homo sapiens protein ( Homo sapiens ... 30 9.9
>M63959-1|AAA51553.1| 357|Homo sapiens alpha-2-macroglobulin
receptor-associated protein protein.
Length = 357
Score = 71.3 bits (167), Expect = 3e-12
Identities = 43/148 (29%), Positives = 84/148 (56%), Gaps = 8/148 (5%)
Frame = -3
Query: 720 NEIXKDYLHQANM-IREKHRDLREGYDKLQRITAKGPYNK-EFIEPKVQGLWRMAAAANF 547
++I LH + ++EK R + +G D+L+R++ +G + EF EP+V LW +A +AN
Sbjct: 210 SDIKGSVLHSRHTELKEKLRSINQGLDRLRRVSHQGYSTEAEFEEPRVIDLWDLAQSANL 269
Query: 546 TVDELASLKVELQHYESRLLKLRHLQAD-HVSNSEKYNTKVAGAGEKMNHFEDQEQTIKK 370
T EL + + EL+H+E+++ K H Q +++ + + + G GE+++ ++ ++
Sbjct: 270 TDKELEAFREELKHFEAKIEKHNHYQKQLEIAHEKLRHAESVGDGERVSRSREKHALLEG 329
Query: 369 HSRK----VEKMHADIETRILE-RHTEL 301
+++ V+K D+ RI RH EL
Sbjct: 330 RTKELGYTVKKHLQDLSGRISRARHNEL 357
>BC112067-1|AAI12068.1| 357|Homo sapiens low density lipoprotein
receptor-related protein associated protein 1 protein.
Length = 357
Score = 71.3 bits (167), Expect = 3e-12
Identities = 43/148 (29%), Positives = 84/148 (56%), Gaps = 8/148 (5%)
Frame = -3
Query: 720 NEIXKDYLHQANM-IREKHRDLREGYDKLQRITAKGPYNK-EFIEPKVQGLWRMAAAANF 547
++I LH + ++EK R + +G D+L+R++ +G + EF EP+V LW +A +AN
Sbjct: 210 SDIKGSVLHSRHTELKEKLRSINQGLDRLRRVSHQGYSTEAEFEEPRVIDLWDLAQSANL 269
Query: 546 TVDELASLKVELQHYESRLLKLRHLQAD-HVSNSEKYNTKVAGAGEKMNHFEDQEQTIKK 370
T EL + + EL+H+E+++ K H Q +++ + + + G GE+++ ++ ++
Sbjct: 270 TDKELEAFREELKHFEAKIEKHNHYQKQLEIAHEKLRHAESVGDGERVSRSREKHALLEG 329
Query: 369 HSRK----VEKMHADIETRILE-RHTEL 301
+++ V+K D+ RI RH EL
Sbjct: 330 RTKELGYTVKKHLQDLSGRISRARHNEL 357
>BC105074-1|AAI05075.1| 357|Homo sapiens low density lipoprotein
receptor-related protein associated protein 1 protein.
Length = 357
Score = 71.3 bits (167), Expect = 3e-12
Identities = 43/148 (29%), Positives = 84/148 (56%), Gaps = 8/148 (5%)
Frame = -3
Query: 720 NEIXKDYLHQANM-IREKHRDLREGYDKLQRITAKGPYNK-EFIEPKVQGLWRMAAAANF 547
++I LH + ++EK R + +G D+L+R++ +G + EF EP+V LW +A +AN
Sbjct: 210 SDIKGSVLHSRHTELKEKLRSINQGLDRLRRVSHQGYSTEAEFEEPRVIDLWDLAQSANL 269
Query: 546 TVDELASLKVELQHYESRLLKLRHLQAD-HVSNSEKYNTKVAGAGEKMNHFEDQEQTIKK 370
T EL + + EL+H+E+++ K H Q +++ + + + G GE+++ ++ ++
Sbjct: 270 TDKELEAFREELKHFEAKIEKHNHYQKQLEIAHEKLRHAESVGDGERVSRSREKHALLEG 329
Query: 369 HSRK----VEKMHADIETRILE-RHTEL 301
+++ V+K D+ RI RH EL
Sbjct: 330 RTKELGYTVKKHLQDLSGRISRARHNEL 357
>AL590235-1|CAM21451.1| 357|Homo sapiens low density lipoprotein
receptor-related protein associated protein 1 protein.
Length = 357
Score = 71.3 bits (167), Expect = 3e-12
Identities = 43/148 (29%), Positives = 84/148 (56%), Gaps = 8/148 (5%)
Frame = -3
Query: 720 NEIXKDYLHQANM-IREKHRDLREGYDKLQRITAKGPYNK-EFIEPKVQGLWRMAAAANF 547
++I LH + ++EK R + +G D+L+R++ +G + EF EP+V LW +A +AN
Sbjct: 210 SDIKGSVLHSRHTELKEKLRSINQGLDRLRRVSHQGYSTEAEFEEPRVIDLWDLAQSANL 269
Query: 546 TVDELASLKVELQHYESRLLKLRHLQAD-HVSNSEKYNTKVAGAGEKMNHFEDQEQTIKK 370
T EL + + EL+H+E+++ K H Q +++ + + + G GE+++ ++ ++
Sbjct: 270 TDKELEAFREELKHFEAKIEKHNHYQKQLEIAHEKLRHAESVGDGERVSRSREKHALLEG 329
Query: 369 HSRK----VEKMHADIETRILE-RHTEL 301
+++ V+K D+ RI RH EL
Sbjct: 330 RTKELGYTVKKHLQDLSGRISRARHNEL 357
>AK222504-1|BAD96224.1| 357|Homo sapiens low density lipoprotein
receptor-related protein associated protein 1 variant
protein.
Length = 357
Score = 71.3 bits (167), Expect = 3e-12
Identities = 43/148 (29%), Positives = 84/148 (56%), Gaps = 8/148 (5%)
Frame = -3
Query: 720 NEIXKDYLHQANM-IREKHRDLREGYDKLQRITAKGPYNK-EFIEPKVQGLWRMAAAANF 547
++I LH + ++EK R + +G D+L+R++ +G + EF EP+V LW +A +AN
Sbjct: 210 SDIKGSVLHSRHTELKEKLRSINQGLDRLRRVSHQGYSTEAEFEEPRVIDLWDLAQSANL 269
Query: 546 TVDELASLKVELQHYESRLLKLRHLQAD-HVSNSEKYNTKVAGAGEKMNHFEDQEQTIKK 370
T EL + + EL+H+E+++ K H Q +++ + + + G GE+++ ++ ++
Sbjct: 270 TDKELEAFREELKHFEAKIEKHNHYQKQLEIAHEKLRHAESVGDGERVSRSREKHALLEG 329
Query: 369 HSRK----VEKMHADIETRILE-RHTEL 301
+++ V+K D+ RI RH EL
Sbjct: 330 RTKELGYTVKKHLQDLSGRISRARHNEL 357
>AF035767-1|AAC67373.1| 357|Homo sapiens lipoprotein receptor
associated protein protein.
Length = 357
Score = 71.3 bits (167), Expect = 3e-12
Identities = 43/148 (29%), Positives = 84/148 (56%), Gaps = 8/148 (5%)
Frame = -3
Query: 720 NEIXKDYLHQANM-IREKHRDLREGYDKLQRITAKGPYNK-EFIEPKVQGLWRMAAAANF 547
++I LH + ++EK R + +G D+L+R++ +G + EF EP+V LW +A +AN
Sbjct: 210 SDIKGSVLHSRHTELKEKLRSINQGLDRLRRVSHQGYSTEAEFEEPRVIDLWDLAQSANL 269
Query: 546 TVDELASLKVELQHYESRLLKLRHLQAD-HVSNSEKYNTKVAGAGEKMNHFEDQEQTIKK 370
T EL + + EL+H+E+++ K H Q +++ + + + G GE+++ ++ ++
Sbjct: 270 TDKELEAFREELKHFEAKIEKHNHYQKQLEIAHEKLRHAESVGDGERVSRSREKHALLEG 329
Query: 369 HSRK----VEKMHADIETRILE-RHTEL 301
+++ V+K D+ RI RH EL
Sbjct: 330 RTKELGYTVKKHLQDLSGRISRARHNEL 357
>AK222527-1|BAD96247.1| 357|Homo sapiens low density lipoprotein
receptor-related protein associated protein 1 variant
protein.
Length = 357
Score = 70.1 bits (164), Expect = 8e-12
Identities = 43/148 (29%), Positives = 83/148 (56%), Gaps = 8/148 (5%)
Frame = -3
Query: 720 NEIXKDYLHQANM-IREKHRDLREGYDKLQRITAKGPYNK-EFIEPKVQGLWRMAAAANF 547
++I LH + ++EK R + +G D+L+R++ +G + EF EP+V LW +A +AN
Sbjct: 210 SDIKGSVLHSRHTELKEKLRSINQGLDRLRRVSHQGYSTEAEFEEPRVIDLWDLAQSANL 269
Query: 546 TVDELASLKVELQHYESRLLKLRHLQAD-HVSNSEKYNTKVAGAGEKMNHFEDQEQTIKK 370
T EL + + EL+H+E+++ K H Q +++ + + + G GE+++ ++ ++
Sbjct: 270 TDKELEAFREELKHFEAKIEKHNHYQKQLEIAHEKLRHAESVGDGERVSRSREKHALLEG 329
Query: 369 HSRK----VEKMHADIETRILE-RHTEL 301
+++ V K D+ RI RH EL
Sbjct: 330 RTKELGYTVMKHLQDLSGRISRARHNEL 357
>AB023217-1|BAA76844.2| 1956|Homo sapiens KIAA1000 protein protein.
Length = 1956
Score = 37.5 bits (83), Expect = 0.049
Identities = 25/134 (18%), Positives = 60/134 (44%), Gaps = 1/134 (0%)
Frame = -3
Query: 729 EQXNEIXKDYLHQANMIREKHRDLREGYDKLQRITAKGPYNKEFIEPKVQGLWRMAAAAN 550
E+ EI + + + ++ +L++ D L+ + K K E KV+ L N
Sbjct: 949 EEEEEINSELTARGRKLEDECFELKKEIDDLETMLVKSEKEKRTTEHKVKNLTEEVEFLN 1008
Query: 549 FTVDELASLKVELQHYESRLLKLRHLQADHVSNSEKYNTKVAGAGEKMNHFEDQEQTIKK 370
+ +L +Q + L H++ + +S+ K N K+ +++ +QE+ +
Sbjct: 1009 EDISKLNRAAKVVQEAHQQTLDDLHMEEEKLSSLSKANLKLEQQVDELEGALEQERKARM 1068
Query: 369 H-SRKVEKMHADIE 331
+ R++ K+ +++
Sbjct: 1069 NCERELHKLEGNLK 1082
Score = 30.7 bits (66), Expect = 5.7
Identities = 34/139 (24%), Positives = 57/139 (41%), Gaps = 8/139 (5%)
Frame = -3
Query: 699 LHQANMIREKHRDLREGYDKLQRITAKGPYNKEF----IEPKVQGLWRMAAAANFTVDEL 532
LH+ + +R+ E + QR A+ KE + KV+ + A TV EL
Sbjct: 1074 LHKLEGNLKLNRESMENLESSQRHLAEELRKKELELSQMNSKVENEKGLVAQLQKTVKEL 1133
Query: 531 AS----LKVELQHYESRLLKLRHLQADHVSNSEKYNTKVAGAGEKMNHFEDQEQTIKKHS 364
+ LK +L+ + K+ +AD + N ++ G Q + KK
Sbjct: 1134 QTQIKDLKEKLEAERTTRAKMERERADLTQDLADLNERLEEVGGSSLA---QLEITKKQE 1190
Query: 363 RKVEKMHADIETRILERHT 307
K++K+H D+E L T
Sbjct: 1191 TKIQKLHRDMEEATLHFET 1209
>X58677-1|CAA41528.1| 608|Homo sapiens hemidesmosomal plaque
protein protein.
Length = 608
Score = 34.3 bits (75), Expect = 0.46
Identities = 16/71 (22%), Positives = 38/71 (53%), Gaps = 1/71 (1%)
Frame = -3
Query: 534 LASLKVELQHYESRLLKLRHLQADHVSNSEKYNTK-VAGAGEKMNHFEDQEQTIKKHSRK 358
+ L+ +LQ Y ++ + +H++A+H +K + +A E N + +Q IK+H +
Sbjct: 206 IKELERQLQQYREQMQQGQHMEANHYQKCQKLEDELIAQKREVENLKQKMDQQIKEHEHQ 265
Query: 357 VEKMHADIETR 325
+ + +I+ +
Sbjct: 266 LVLLQCEIQKK 276
>M63618-1|AAA35606.1| 2095|Homo sapiens bullous pemphigoid antigen
protein.
Length = 2095
Score = 34.3 bits (75), Expect = 0.46
Identities = 16/71 (22%), Positives = 38/71 (53%), Gaps = 1/71 (1%)
Frame = -3
Query: 534 LASLKVELQHYESRLLKLRHLQADHVSNSEKYNTK-VAGAGEKMNHFEDQEQTIKKHSRK 358
+ L+ +LQ Y ++ + +H++A+H +K + +A E N + +Q IK+H +
Sbjct: 1246 IKELERQLQQYREQMQQGQHMEANHYQKCQKLEDELIAQKREVENLKQKMDQQIKEHEHQ 1305
Query: 357 VEKMHADIETR 325
+ + +I+ +
Sbjct: 1306 LVLLQCEIQKK 1316
>M22942-1|AAA35538.1| 664|Homo sapiens protein ( Human bullous
pemphigoid antigen mRNA, 3' end. ).
Length = 664
Score = 34.3 bits (75), Expect = 0.46
Identities = 16/71 (22%), Positives = 38/71 (53%), Gaps = 1/71 (1%)
Frame = -3
Query: 534 LASLKVELQHYESRLLKLRHLQADHVSNSEKYNTK-VAGAGEKMNHFEDQEQTIKKHSRK 358
+ L+ +LQ Y ++ + +H++A+H +K + +A E N + +Q IK+H +
Sbjct: 79 IKELERQLQQYREQMQQGQHMEANHYQKCQKLEDELIAQKREVENLKQKMDQQIKEHEHQ 138
Query: 357 VEKMHADIETR 325
+ + +I+ +
Sbjct: 139 LVLLQCEIQKK 149
>L11690-1|AAA52288.1| 2649|Homo sapiens bullous pemphigoid antigen
protein.
Length = 2649
Score = 34.3 bits (75), Expect = 0.46
Identities = 16/71 (22%), Positives = 38/71 (53%), Gaps = 1/71 (1%)
Frame = -3
Query: 534 LASLKVELQHYESRLLKLRHLQADHVSNSEKYNTK-VAGAGEKMNHFEDQEQTIKKHSRK 358
+ L+ +LQ Y ++ + +H++A+H +K + +A E N + +Q IK+H +
Sbjct: 1800 IKELERQLQQYREQMQQGQHMEANHYQKCQKLEDELIAQKREVENLKQKMDQQIKEHEHQ 1859
Query: 357 VEKMHADIETR 325
+ + +I+ +
Sbjct: 1860 LVLLQCEIQKK 1870
>AL096710-6|CAI22047.1| 2649|Homo sapiens dystonin protein.
Length = 2649
Score = 34.3 bits (75), Expect = 0.46
Identities = 16/71 (22%), Positives = 38/71 (53%), Gaps = 1/71 (1%)
Frame = -3
Query: 534 LASLKVELQHYESRLLKLRHLQADHVSNSEKYNTK-VAGAGEKMNHFEDQEQTIKKHSRK 358
+ L+ +LQ Y ++ + +H++A+H +K + +A E N + +Q IK+H +
Sbjct: 1800 IKELERQLQQYREQMQQGQHMEANHYQKCQKLEDELIAQKREVENLKQKMDQQIKEHEHQ 1859
Query: 357 VEKMHADIETR 325
+ + +I+ +
Sbjct: 1860 LVLLQCEIQKK 1870
>AK025690-1|BAB15219.1| 746|Homo sapiens protein ( Homo sapiens
cDNA: FLJ22037 fis, clone HEP08868. ).
Length = 746
Score = 33.1 bits (72), Expect = 1.1
Identities = 26/112 (23%), Positives = 51/112 (45%)
Frame = -3
Query: 663 DLREGYDKLQRITAKGPYNKEFIEPKVQGLWRMAAAANFTVDELASLKVELQHYESRLLK 484
DL+ + L+ AK K+ ++ KV+ L + ++ +L K L+ + L
Sbjct: 141 DLKRDLEGLETTLAKTEKEKQALDHKVRTLTGDLSLREDSITKLQKEKRALEELHQKTLD 200
Query: 483 LRHLQADHVSNSEKYNTKVAGAGEKMNHFEDQEQTIKKHSRKVEKMHADIET 328
+ D V++ K N+K++ +++ ED + KK +VEK E+
Sbjct: 201 DLQAEEDKVNHLTKNNSKLS---TQIHELEDNWEQEKKIRAEVEKARRKAES 249
>AL031283-3|CAI21424.1| 316|Homo sapiens forkhead-associated (FHA)
phosphopeptide binding domain 1 protein.
Length = 316
Score = 31.9 bits (69), Expect = 2.5
Identities = 24/129 (18%), Positives = 55/129 (42%), Gaps = 4/129 (3%)
Frame = -3
Query: 675 EKHRDLREGYDKLQRITAKGPYNKEFIEPKVQGLWRMAAAANFTVDELASLKVELQHYES 496
+ HR+LRE +K ++ + E K++ R + + K +L+H+ S
Sbjct: 108 DAHRELREAQEKELKLCKTQIQDMEKEMKKLRAELRKSCTEQSVISRTLREKSKLEHFRS 167
Query: 495 RLLKLRHLQA----DHVSNSEKYNTKVAGAGEKMNHFEDQEQTIKKHSRKVEKMHADIET 328
+++K + +A D ++ K+ E +F+ ++ T++K ++ +
Sbjct: 168 QVIKATYGRAKPFRDKPVTDQQLIEKITQVTEDNINFQQKKWTLQKETQLSNSKQEETTE 227
Query: 327 RILERHTEL 301
I + T L
Sbjct: 228 NIEKLRTSL 236
>AL031283-1|CAI21423.1| 445|Homo sapiens forkhead-associated (FHA)
phosphopeptide binding domain 1 protein.
Length = 445
Score = 31.9 bits (69), Expect = 2.5
Identities = 24/129 (18%), Positives = 55/129 (42%), Gaps = 4/129 (3%)
Frame = -3
Query: 675 EKHRDLREGYDKLQRITAKGPYNKEFIEPKVQGLWRMAAAANFTVDELASLKVELQHYES 496
+ HR+LRE +K ++ + E K++ R + + K +L+H+ S
Sbjct: 129 DAHRELREAQEKELKLCKTQIQDMEKEMKKLRAELRKSCTEQSVISRTLREKSKLEHFRS 188
Query: 495 RLLKLRHLQA----DHVSNSEKYNTKVAGAGEKMNHFEDQEQTIKKHSRKVEKMHADIET 328
+++K + +A D ++ K+ E +F+ ++ T++K ++ +
Sbjct: 189 QVIKATYGRAKPFRDKPVTDQQLIEKITQVTEDNINFQQKKWTLQKETQLSNSKQEETTE 248
Query: 327 RILERHTEL 301
I + T L
Sbjct: 249 NIEKLRTSL 257
>BC028423-1|AAH28423.1| 1022|Homo sapiens PMFBP1 protein protein.
Length = 1022
Score = 31.5 bits (68), Expect = 3.2
Identities = 18/80 (22%), Positives = 43/80 (53%), Gaps = 1/80 (1%)
Frame = -3
Query: 537 ELASLKVELQHYESRLLKLRHLQADHVSNSEKYNTKVAGAGEKMNH-FEDQEQTIKKHSR 361
E S+K +L+ KL + + + S+++ + G E + F+ +++T+K++SR
Sbjct: 602 EQGSIKCKLEEDLQEATKLLEDKREQLKKSKEHEKLMEGELEALRQEFKKKDKTLKENSR 661
Query: 360 KVEKMHADIETRILERHTEL 301
K+E+ + ++ + T+L
Sbjct: 662 KLEEENENLRAELQCCSTQL 681
>AY154468-1|AAO18164.1| 1043|Homo sapiens NALP13 protein.
Length = 1043
Score = 31.1 bits (67), Expect = 4.3
Identities = 26/90 (28%), Positives = 40/90 (44%), Gaps = 9/90 (10%)
Frame = -3
Query: 543 VDELASLKVELQHYESRLLK---LRHLQADHVSNSEKYNTKVAGA--GEKMNHFEDQEQT 379
++EL EL ES L+ LR H S E + K+ G +N ED+E
Sbjct: 613 MEELLKWGEELGKAESASLQFHILRLFHCLHESQEEDFTKKMLGRIFEVDLNILEDEELQ 672
Query: 378 IK----KHSRKVEKMHADIETRILERHTEL 301
KH +++ K+ + + ILER E+
Sbjct: 673 ASSFCLKHCKRLNKLRLSVSSHILERDLEI 702
>AF034802-1|AAC26103.1| 1005|Homo sapiens liprin-beta1 protein.
Length = 1005
Score = 31.1 bits (67), Expect = 4.3
Identities = 24/74 (32%), Positives = 42/74 (56%), Gaps = 1/74 (1%)
Frame = -3
Query: 546 TVDELASLKVELQHYESRLLKLRHLQADHVSNSEKYNTKVAGAG-EKMNHFEDQEQTIKK 370
T DELASLK +L+ ES + +L+ EK K+ G G E ++ E+ ++ +K+
Sbjct: 231 TKDELASLKEQLEEKESEVKRLQ----------EKLVCKMKGEGVEIVDRDENFKKKLKE 280
Query: 369 HSRKVEKMHADIET 328
+ +V+KM +E+
Sbjct: 281 KNIEVQKMKKAVES 294
>AK093104-1|BAC04058.1| 371|Homo sapiens protein ( Homo sapiens
cDNA FLJ35785 fis, clone TESTI2005603, moderately
similar to Homo sapiens 88-kDa Golgi protein (GM88)
mRNA. ).
Length = 371
Score = 30.7 bits (66), Expect = 5.7
Identities = 14/64 (21%), Positives = 33/64 (51%)
Frame = -3
Query: 522 KVELQHYESRLLKLRHLQADHVSNSEKYNTKVAGAGEKMNHFEDQEQTIKKHSRKVEKMH 343
+VELQH L ++ V N+++ + G E++ +QE+ ++K ++++ H
Sbjct: 224 EVELQHLRKELERVAGALQAQVKNNQRISLLNRGQEERI---REQEERLRKQEERIQEQH 280
Query: 342 ADIE 331
++
Sbjct: 281 KSLQ 284
>AF362887-1|AAK51964.1| 142|Homo sapiens tropomyosin 4-anaplastic
lymphoma kinase fusion protein minor isoform protein.
Length = 142
Score = 30.7 bits (66), Expect = 5.7
Identities = 18/75 (24%), Positives = 35/75 (46%)
Frame = -3
Query: 525 LKVELQHYESRLLKLRHLQADHVSNSEKYNTKVAGAGEKMNHFEDQEQTIKKHSRKVEKM 346
L+ EL++ + L L + +KY ++ +K+ E + + ++ K+EK
Sbjct: 48 LEEELKNVTNNLKSLEAASEKYSEKEDKYEEEIKLLSDKLKEAETRAEFAERTVAKLEKT 107
Query: 345 HADIETRILERHTEL 301
D+E L +H EL
Sbjct: 108 IDDLEV-YLRKHQEL 121
>BC146604-1|AAI46605.1| 974|Homo sapiens C14orf49 protein protein.
Length = 974
Score = 29.9 bits (64), Expect = 9.9
Identities = 22/64 (34%), Positives = 30/64 (46%)
Frame = -3
Query: 663 DLREGYDKLQRITAKGPYNKEFIEPKVQGLWRMAAAANFTVDELASLKVELQHYESRLLK 484
DLR KLQ + A+ P + E L R+ A T DEL L+ + Y+S+L
Sbjct: 836 DLRTRKSKLQELEARVPEGQHLFE----NLLRLGPARG-TSDELEDLRYQWMLYKSKLKD 890
Query: 483 LRHL 472
HL
Sbjct: 891 SGHL 894
>BC115701-1|AAI15702.1| 828|Homo sapiens SLMAP protein protein.
Length = 828
Score = 29.9 bits (64), Expect = 9.9
Identities = 22/93 (23%), Positives = 41/93 (44%), Gaps = 11/93 (11%)
Frame = -3
Query: 729 EQXNEIXKDYLHQANMIREKHRDLREGYDKLQRITAKGPYNKEFIEPKVQGLWR------ 568
E+ E+ Y N I++ L+ K + I KG K+ ++ K+ +
Sbjct: 298 EELRELANKYNGAVNEIKDLSDKLKVAEGKQEEIQQKGQAEKKELQHKIDEMEEKEQELQ 357
Query: 567 -----MAAAANFTVDELASLKVELQHYESRLLK 484
+ A +FT + L +L+V L+H + + LK
Sbjct: 358 AKIEALQADNDFTNERLTALQVRLEHLQEKTLK 390
>BC028119-1|AAH28119.1| 391|Homo sapiens testis expressed 9
protein.
Length = 391
Score = 29.9 bits (64), Expect = 9.9
Identities = 16/74 (21%), Positives = 39/74 (52%), Gaps = 3/74 (4%)
Frame = -3
Query: 540 DELASLKVELQHYESRLLKLRHLQADHVSNSEKYNTKVAGAGEKMNHFEDQEQTIKK--- 370
DE+ +LK +++++E ++ + S EKY T A +K + + Q ++++
Sbjct: 220 DEIQNLKSQVKNFEEDFMRQQRTINMQQSQVEKYKTLFEEANKKYDGLQQQLSSVERELE 279
Query: 369 HSRKVEKMHADIET 328
+ R+++K A ++
Sbjct: 280 NKRRLQKQAASSQS 293
>AY358410-1|AAQ88776.1| 296|Homo sapiens SLAP protein.
Length = 296
Score = 29.9 bits (64), Expect = 9.9
Identities = 22/93 (23%), Positives = 41/93 (44%), Gaps = 11/93 (11%)
Frame = -3
Query: 729 EQXNEIXKDYLHQANMIREKHRDLREGYDKLQRITAKGPYNKEFIEPKVQGLWR------ 568
E+ E+ Y N I++ L+ K + I KG K+ ++ K+ +
Sbjct: 166 EELRELANKYNGAVNEIKDLSDKLKVAEGKQEEIQQKGQAEKKELQHKIDEMEEKEQELQ 225
Query: 567 -----MAAAANFTVDELASLKVELQHYESRLLK 484
+ A +FT + L +L+V L+H + + LK
Sbjct: 226 AKIEALQADNDFTNERLTALQVRLEHLQEKTLK 258
>AL590431-10|CAH71268.1| 247|Homo sapiens tropomyosin 3 protein.
Length = 247
Score = 29.9 bits (64), Expect = 9.9
Identities = 18/85 (21%), Positives = 37/85 (43%)
Frame = -3
Query: 576 LWRMAAAANFTVDELASLKVELQHYESRLLKLRHLQADHVSNSEKYNTKVAGAGEKMNHF 397
L R A + + L+ EL++ + L L + +KY ++ +K+
Sbjct: 140 LERTEERAELAESKCSELEEELKNVTNNLKSLEAQAEKYSQKEDKYEEEIKILTDKLKEA 199
Query: 396 EDQEQTIKKHSRKVEKMHADIETRI 322
E + + ++ K+EK D+E R+
Sbjct: 200 ETRAEFAERSVAKLEKTIDDLEERL 224
>AK131436-1|BAD18582.1| 904|Homo sapiens protein ( Homo sapiens
cDNA FLJ16564 fis, clone SYNOV4005889. ).
Length = 904
Score = 29.9 bits (64), Expect = 9.9
Identities = 22/64 (34%), Positives = 30/64 (46%)
Frame = -3
Query: 663 DLREGYDKLQRITAKGPYNKEFIEPKVQGLWRMAAAANFTVDELASLKVELQHYESRLLK 484
DLR KLQ + A+ P + E L R+ A T DEL L+ + Y+S+L
Sbjct: 766 DLRTRKSKLQELEARVPEGQHLFE----NLLRLGPARG-TSDELEDLRYQWMLYKSKLKD 820
Query: 483 LRHL 472
HL
Sbjct: 821 SGHL 824
>AK124200-1|BAC85803.1| 506|Homo sapiens protein ( Homo sapiens
cDNA FLJ42206 fis, clone THYMU2035735, highly similar
to Oryctolagus cuniculus sarcolemmal associated
protein-3 mRNA. ).
Length = 506
Score = 29.9 bits (64), Expect = 9.9
Identities = 22/93 (23%), Positives = 41/93 (44%), Gaps = 11/93 (11%)
Frame = -3
Query: 729 EQXNEIXKDYLHQANMIREKHRDLREGYDKLQRITAKGPYNKEFIEPKVQGLWR------ 568
E+ E+ Y N I++ L+ K + I KG K+ ++ K+ +
Sbjct: 298 EELRELANKYNGAVNEIKDLSDKLKVAEGKQEEIQQKGQAEKKELQHKIDEMEEKEQELQ 357
Query: 567 -----MAAAANFTVDELASLKVELQHYESRLLK 484
+ A +FT + L +L+V L+H + + LK
Sbjct: 358 AKIEALQADNDFTNERLTALQVRLEHLQEKTLK 390
>AK098471-1|BAC05312.1| 489|Homo sapiens protein ( Homo sapiens
cDNA FLJ25605 fis, clone JTH14272. ).
Length = 489
Score = 29.9 bits (64), Expect = 9.9
Identities = 22/64 (34%), Positives = 30/64 (46%)
Frame = -3
Query: 663 DLREGYDKLQRITAKGPYNKEFIEPKVQGLWRMAAAANFTVDELASLKVELQHYESRLLK 484
DLR KLQ + A+ P + E L R+ A T DEL L+ + Y+S+L
Sbjct: 351 DLRTRKSKLQELEARVPEGQHLFE----NLLRLGPARG-TSDELEDLRYQWMLYKSKLKD 405
Query: 483 LRHL 472
HL
Sbjct: 406 SGHL 409
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 92,608,022
Number of Sequences: 237096
Number of extensions: 1810133
Number of successful extensions: 4040
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 3869
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4031
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8735159784
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -