Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte16e20
(734 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z75527-4|CAA99779.2| 316|Caenorhabditis elegans Hypothetical pr... 53 2e-07
DQ178236-1|ABA18178.1| 316|Caenorhabditis elegans putative low ... 53 2e-07
AF016669-2|AAB66099.2| 455|Caenorhabditis elegans Hypothetical ... 32 0.37
U41278-4|AAK31513.3| 928|Caenorhabditis elegans Hypothetical pr... 31 1.1
U64862-5|AAQ91890.1| 2350|Caenorhabditis elegans Lin-5 (five) in... 30 2.0
U64862-4|AAZ32792.1| 2117|Caenorhabditis elegans Lin-5 (five) in... 30 2.0
U64862-3|AAM69078.1| 2396|Caenorhabditis elegans Lin-5 (five) in... 30 2.0
U64833-6|AAK95861.1| 350|Caenorhabditis elegans Hypothetical pr... 30 2.0
AL117202-20|CAB57898.4| 1205|Caenorhabditis elegans Hypothetical... 30 2.0
AL023847-1|CAA19545.1| 364|Caenorhabditis elegans Hypothetical ... 29 3.4
Z68159-6|CAA92287.5| 485|Caenorhabditis elegans Hypothetical pr... 29 4.5
AC006607-7|AAL00855.1| 789|Caenorhabditis elegans Hypothetical ... 29 4.5
Z46242-13|CAA86328.1| 135|Caenorhabditis elegans Hypothetical p... 28 6.0
U97550-1|AAK18983.2| 1065|Caenorhabditis elegans Hypothetical pr... 28 7.9
AC006607-11|AAN63459.1| 1080|Caenorhabditis elegans Hypothetical... 28 7.9
AC006607-10|AAN63458.1| 1114|Caenorhabditis elegans Hypothetical... 28 7.9
>Z75527-4|CAA99779.2| 316|Caenorhabditis elegans Hypothetical
protein C15C8.4 protein.
Length = 316
Score = 52.8 bits (121), Expect = 2e-07
Identities = 41/130 (31%), Positives = 71/130 (54%), Gaps = 3/130 (2%)
Frame = -3
Query: 681 IREKHRDLREGYDKLQRITAKGPYNKEFIEPKVQGLWRMAAA-ANFTVDELASLKVELQH 505
++ +R+L + D++ R ++ F EP+V+ LW++A T EL+ LK EL H
Sbjct: 192 LKAANRELNDHLDEVHRKVTSEEFSP-FNEPRVKRLWKLAQENEKLTPHELSVLKDELSH 250
Query: 504 YESRLLKLRHLQADHVSNSEKYNTKVAGAGEKMNHFEDQEQTIK--KHSRKVEKMHADIE 331
+ES+L K+ + VS ++ + + G +K +E+ E +IK K +RK K+ IE
Sbjct: 251 FESQLKKI-EFHKEEVSRLQE-DAEERGK-DKSQVYENLELSIKHEKLNRKARKLEKYIE 307
Query: 330 TRILERHTEL 301
+I+ H EL
Sbjct: 308 EKII-IHREL 316
>DQ178236-1|ABA18178.1| 316|Caenorhabditis elegans putative low
density lipoproteinreceptor associated protein (37.4 kD)
protein.
Length = 316
Score = 52.8 bits (121), Expect = 2e-07
Identities = 41/130 (31%), Positives = 71/130 (54%), Gaps = 3/130 (2%)
Frame = -3
Query: 681 IREKHRDLREGYDKLQRITAKGPYNKEFIEPKVQGLWRMAAA-ANFTVDELASLKVELQH 505
++ +R+L + D++ R ++ F EP+V+ LW++A T EL+ LK EL H
Sbjct: 192 LKAANRELNDHLDEVHRKVTSEEFSP-FNEPRVKRLWKLAQENEKLTPHELSVLKDELSH 250
Query: 504 YESRLLKLRHLQADHVSNSEKYNTKVAGAGEKMNHFEDQEQTIK--KHSRKVEKMHADIE 331
+ES+L K+ + VS ++ + + G +K +E+ E +IK K +RK K+ IE
Sbjct: 251 FESQLKKI-EFHKEEVSRLQE-DAEERGK-DKSQVYENLELSIKHEKLNRKARKLEKYIE 307
Query: 330 TRILERHTEL 301
+I+ H EL
Sbjct: 308 EKII-IHREL 316
>AF016669-2|AAB66099.2| 455|Caenorhabditis elegans Hypothetical
protein K10G6.4 protein.
Length = 455
Score = 32.3 bits (70), Expect = 0.37
Identities = 32/148 (21%), Positives = 68/148 (45%), Gaps = 5/148 (3%)
Frame = -3
Query: 729 EQXNEIXKDYLHQANMIREKHRDLREGYDKLQRITAKGPYNKEFIEPKVQGLWRMAAAAN 550
E+ + K++ H +EK + E +KLQ + + + + Q R
Sbjct: 37 EKFLSLSKEHEHLRKE-QEKWAEGAESREKLQELEGRSDELIKIMRQANQE--REVRYEK 93
Query: 549 FTVDELASLKVELQHYESRLLKLRHLQADHVSNSEKYNTKVAGAGEKMNHFEDQEQTIK- 373
F VD + L+ ELQ +++ KLR + + V +++ ++A KM+ ++ +E+ +
Sbjct: 94 FKVDTIEELQNELQDQNNQIDKLRIDRQELVKENDQLLEEIAEMSTKMDDYKRKEKAKEV 153
Query: 372 ----KHSRKVEKMHADIETRILERHTEL 301
K+ +K++ + + E R+ R L
Sbjct: 154 EMRMKYDQKLKDIVMNKEKRVSPRFEHL 181
>U41278-4|AAK31513.3| 928|Caenorhabditis elegans Hypothetical
protein F33G12.5 protein.
Length = 928
Score = 30.7 bits (66), Expect = 1.1
Identities = 34/141 (24%), Positives = 65/141 (46%), Gaps = 5/141 (3%)
Frame = -3
Query: 708 KDYLHQANMIREKHRDLREGYDKLQRITAKGPY----NKEFIEPKVQG-LWRMAAAANFT 544
K+ Q N I + +D++ L+++ A GP N+ +Q L + A +
Sbjct: 247 KETAAQENRISQLMKDIQMKDLYLKQLGATGPPGGIPNENTNYENLQRELENVKAEKSRL 306
Query: 543 VDELASLKVELQHYESRLLKLRHLQADHVSNSEKYNTKVAGAGEKMNHFEDQEQTIKKHS 364
+ E A+LK HY R L+ QA+ E + + + +++ H E+Q + +
Sbjct: 307 LVESATLKA---HYADREYALQQKQAEMALEIEHLHNQKFSSNDQVEHLENQLEIAQSEL 363
Query: 363 RKVEKMHADIETRILERHTEL 301
+K++ M+ D+ ERH E+
Sbjct: 364 QKLQ-MNMDVS----ERHDEI 379
>U64862-5|AAQ91890.1| 2350|Caenorhabditis elegans Lin-5 (five)
interacting proteinprotein 1, isoform d protein.
Length = 2350
Score = 29.9 bits (64), Expect = 2.0
Identities = 27/133 (20%), Positives = 64/133 (48%), Gaps = 1/133 (0%)
Frame = -3
Query: 696 HQANMIREKHRDLREGYDKLQRITAKGPYN-KEFIEPKVQGLWRMAAAANFTVDELASLK 520
H A ++ + R+ Y K + A+ ++ + +E +++G + DEL L+
Sbjct: 756 HLAEQQLKEIKIQRDDYQKQKDEHARHLFDIRHKLETEIKGRQDLEKNGARNNDELDKLR 815
Query: 519 VELQHYESRLLKLRHLQADHVSNSEKYNTKVAGAGEKMNHFEDQEQTIKKHSRKVEKMHA 340
+ YES++ LR ++++ +T + G K+ H E++ + S ++EK++
Sbjct: 816 QTISDYESQINLLRR-------HNDELDTTIKGHQGKITHLENE---LHSRSGEIEKLN- 864
Query: 339 DIETRILERHTEL 301
D+ R+ + ++
Sbjct: 865 DLNQRLQKEKQDI 877
>U64862-4|AAZ32792.1| 2117|Caenorhabditis elegans Lin-5 (five)
interacting proteinprotein 1, isoform b protein.
Length = 2117
Score = 29.9 bits (64), Expect = 2.0
Identities = 27/133 (20%), Positives = 64/133 (48%), Gaps = 1/133 (0%)
Frame = -3
Query: 696 HQANMIREKHRDLREGYDKLQRITAKGPYN-KEFIEPKVQGLWRMAAAANFTVDELASLK 520
H A ++ + R+ Y K + A+ ++ + +E +++G + DEL L+
Sbjct: 829 HLAEQQLKEIKIQRDDYQKQKDEHARHLFDIRHKLETEIKGRQDLEKNGARNNDELDKLR 888
Query: 519 VELQHYESRLLKLRHLQADHVSNSEKYNTKVAGAGEKMNHFEDQEQTIKKHSRKVEKMHA 340
+ YES++ LR ++++ +T + G K+ H E++ + S ++EK++
Sbjct: 889 QTISDYESQINLLRR-------HNDELDTTIKGHQGKITHLENE---LHSRSGEIEKLN- 937
Query: 339 DIETRILERHTEL 301
D+ R+ + ++
Sbjct: 938 DLNQRLQKEKQDI 950
>U64862-3|AAM69078.1| 2396|Caenorhabditis elegans Lin-5 (five)
interacting proteinprotein 1, isoform a protein.
Length = 2396
Score = 29.9 bits (64), Expect = 2.0
Identities = 27/133 (20%), Positives = 64/133 (48%), Gaps = 1/133 (0%)
Frame = -3
Query: 696 HQANMIREKHRDLREGYDKLQRITAKGPYN-KEFIEPKVQGLWRMAAAANFTVDELASLK 520
H A ++ + R+ Y K + A+ ++ + +E +++G + DEL L+
Sbjct: 829 HLAEQQLKEIKIQRDDYQKQKDEHARHLFDIRHKLETEIKGRQDLEKNGARNNDELDKLR 888
Query: 519 VELQHYESRLLKLRHLQADHVSNSEKYNTKVAGAGEKMNHFEDQEQTIKKHSRKVEKMHA 340
+ YES++ LR ++++ +T + G K+ H E++ + S ++EK++
Sbjct: 889 QTISDYESQINLLRR-------HNDELDTTIKGHQGKITHLENE---LHSRSGEIEKLN- 937
Query: 339 DIETRILERHTEL 301
D+ R+ + ++
Sbjct: 938 DLNQRLQKEKQDI 950
>U64833-6|AAK95861.1| 350|Caenorhabditis elegans Hypothetical
protein B0507.8 protein.
Length = 350
Score = 29.9 bits (64), Expect = 2.0
Identities = 18/75 (24%), Positives = 38/75 (50%)
Frame = -3
Query: 525 LKVELQHYESRLLKLRHLQADHVSNSEKYNTKVAGAGEKMNHFEDQEQTIKKHSRKVEKM 346
LK + +H + + +R+ Q + NS+K + + A +NHFED + + ++K
Sbjct: 20 LKEQAEHEQKKEESIRNAQIEVEQNSKKIDVLTSIA---LNHFEDATSKFNEKNLHLDKE 76
Query: 345 HADIETRILERHTEL 301
A+ + R + +E+
Sbjct: 77 IAEGKARSMIMESEV 91
>AL117202-20|CAB57898.4| 1205|Caenorhabditis elegans Hypothetical
protein Y47D3A.26 protein.
Length = 1205
Score = 29.9 bits (64), Expect = 2.0
Identities = 24/136 (17%), Positives = 64/136 (47%), Gaps = 1/136 (0%)
Frame = -3
Query: 732 SEQXNEIXKDYLHQANMIREKHRDLREGYDKLQRITAK-GPYNKEFIEPKVQGLWRMAAA 556
+++ E+ K M+RE+ ++ + +++Q+ + G ++++ E + A
Sbjct: 691 TKELAELQKSLAEAEKMVRERTQEAEKIRNRMQQHENQIGDFHRKHRE--------LTEA 742
Query: 555 ANFTVDELASLKVELQHYESRLLKLRHLQADHVSNSEKYNTKVAGAGEKMNHFEDQEQTI 376
N + + + + +LL +++ + ++ E + ++ G+ D+EQT+
Sbjct: 743 KNAISQQFYMVTSTKEPKKDQLLGIKNHLRELLAQKENFEQEI-GSNMSSQLTSDEEQTV 801
Query: 375 KKHSRKVEKMHADIET 328
KK +KV++M + T
Sbjct: 802 KKLRKKVDEMTKQLAT 817
>AL023847-1|CAA19545.1| 364|Caenorhabditis elegans Hypothetical
protein Y57A10C.3 protein.
Length = 364
Score = 29.1 bits (62), Expect = 3.4
Identities = 17/49 (34%), Positives = 24/49 (48%), Gaps = 3/49 (6%)
Frame = +1
Query: 535 LIHGKVCGSCHSPQTLHFG---FYKFFVVWTFSSNPL*FVISFSQISVL 672
LI GK+ C+ G KF+V+WT SN + V SF + +L
Sbjct: 78 LIIGKLITMCYQLSIFSIGNLEIRKFYVLWTDDSNKMLVVNSFEGLELL 126
>Z68159-6|CAA92287.5| 485|Caenorhabditis elegans Hypothetical
protein C33D9.6 protein.
Length = 485
Score = 28.7 bits (61), Expect = 4.5
Identities = 20/83 (24%), Positives = 41/83 (49%)
Frame = -3
Query: 573 WRMAAAANFTVDELASLKVELQHYESRLLKLRHLQADHVSNSEKYNTKVAGAGEKMNHFE 394
WR+ ++++ LK EL+H ++ + + K N + A A EK+
Sbjct: 113 WRLRDELTKSIEQEEKLKAELKHANDQINMIVEHNKLELDALNKINLE-AKAQEKI---- 167
Query: 393 DQEQTIKKHSRKVEKMHADIETR 325
QE+ I++ ++VE + + +ET+
Sbjct: 168 -QEEIIQRCMKRVEDLESILETK 189
>AC006607-7|AAL00855.1| 789|Caenorhabditis elegans Hypothetical
protein C09E7.9 protein.
Length = 789
Score = 28.7 bits (61), Expect = 4.5
Identities = 15/63 (23%), Positives = 34/63 (53%), Gaps = 1/63 (1%)
Frame = -3
Query: 537 ELASLKVELQHYESRLLKLRHLQADHVSNSEKYNTKVAGAGEKMNHFEDQ-EQTIKKHSR 361
E + +++E+ + L ++ + NSE++ TK+ + K +FE Q E +K+++
Sbjct: 286 ECSDVRMEMYTVKDVLQNVQKQLKNMQQNSEQFETKLVASDNKTKNFEKQLEDERRKNNK 345
Query: 360 KVE 352
+E
Sbjct: 346 HLE 348
>Z46242-13|CAA86328.1| 135|Caenorhabditis elegans Hypothetical
protein F35G12.9 protein.
Length = 135
Score = 28.3 bits (60), Expect = 6.0
Identities = 11/27 (40%), Positives = 18/27 (66%)
Frame = -1
Query: 641 NYRGLLLKVHTTKNL*NPKCKVCGEWQ 561
++ G+LLK +T ++ K VCGEW+
Sbjct: 37 DHPGILLKTNTRMSITVKKLHVCGEWK 63
>U97550-1|AAK18983.2| 1065|Caenorhabditis elegans Hypothetical
protein T20F7.5 protein.
Length = 1065
Score = 27.9 bits (59), Expect = 7.9
Identities = 14/48 (29%), Positives = 25/48 (52%)
Frame = -3
Query: 501 ESRLLKLRHLQADHVSNSEKYNTKVAGAGEKMNHFEDQEQTIKKHSRK 358
E LL+ RHL+ + + + K ++K + E Q +T+KK +K
Sbjct: 737 EMELLERRHLEKEAQTTTNKGSSKQDNIDYLSSKIERQLETVKKEDKK 784
>AC006607-11|AAN63459.1| 1080|Caenorhabditis elegans Hypothetical
protein C09E7.8b protein.
Length = 1080
Score = 27.9 bits (59), Expect = 7.9
Identities = 15/63 (23%), Positives = 33/63 (52%), Gaps = 1/63 (1%)
Frame = -3
Query: 537 ELASLKVELQHYESRLLKLRHLQADHVSNSEKYNTKVAGAGEKMNHFEDQ-EQTIKKHSR 361
E +++E+ + L ++ + NSE++ TK+ + K +FE Q E +K+++
Sbjct: 577 ECNDVRMEMNTVKDVLQNVQKQLKNMQQNSEQFETKLVASDNKTKNFEKQLEDERRKNNK 636
Query: 360 KVE 352
+E
Sbjct: 637 HLE 639
>AC006607-10|AAN63458.1| 1114|Caenorhabditis elegans Hypothetical
protein C09E7.8a protein.
Length = 1114
Score = 27.9 bits (59), Expect = 7.9
Identities = 15/63 (23%), Positives = 33/63 (52%), Gaps = 1/63 (1%)
Frame = -3
Query: 537 ELASLKVELQHYESRLLKLRHLQADHVSNSEKYNTKVAGAGEKMNHFEDQ-EQTIKKHSR 361
E +++E+ + L ++ + NSE++ TK+ + K +FE Q E +K+++
Sbjct: 611 ECNDVRMEMNTVKDVLQNVQKQLKNMQQNSEQFETKLVASDNKTKNFEKQLEDERRKNNK 670
Query: 360 KVE 352
+E
Sbjct: 671 HLE 673
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,166,049
Number of Sequences: 27780
Number of extensions: 293171
Number of successful extensions: 928
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 893
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 925
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1724918872
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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