Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte16e20
         (734 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    24   1.3  
DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    22   5.2  
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    22   5.2  
AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase prot...    22   6.9  
AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase pro...    22   6.9  
DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor pr...    21   9.1  
AB208108-1|BAE72140.1|   92|Apis mellifera Broad complex zinc fi...    21   9.1  

>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 14/41 (34%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
 Frame = +2

Query: 347 IFSTFLE-CFLMVCSWSSK*FIFSPAPATLVLYFSLLLTWS 466
           +F T++  C +++ SW S       APA + L  + LLT S
Sbjct: 248 LFHTYIPTCLIVIMSWVSFWIKPEAAPARVTLGVTSLLTLS 288


>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 22.2 bits (45), Expect = 5.2
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = +2

Query: 368 CFLMVCSWSSK*FIFSPAPATLVLYFSLLLT 460
           C L++ SW S     S  PA + L  + LLT
Sbjct: 253 CMLVIVSWVSFWLDQSAVPARVSLGVTTLLT 283


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 22.2 bits (45), Expect = 5.2
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = +2

Query: 368 CFLMVCSWSSK*FIFSPAPATLVLYFSLLLT 460
           C L++ SW S     S  PA + L  + LLT
Sbjct: 253 CMLVIVSWVSFWLDQSAVPARVSLGVTTLLT 283


>AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase
           protein.
          Length = 693

 Score = 21.8 bits (44), Expect = 6.9
 Identities = 14/60 (23%), Positives = 28/60 (46%)
 Frame = +3

Query: 84  WHWT*PFSIQWYSILISF*KRTNSNFQFIFIYNSQKIHSQHI*HRKCHKLPVIL*FANSH 263
           WHW   +  +    +++  +R       +F Y  Q+I +++   R C++L  +  F N H
Sbjct: 210 WHWHLVYPFEGDIRIVNKDRRGE-----LFYYMHQQIMARYNCERLCNRLGRVKRFINWH 264


>AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase
           protein.
          Length = 588

 Score = 21.8 bits (44), Expect = 6.9
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = +2

Query: 263 SMMVNNGKSSQIYNSVCRSNILVS 334
           S +VN   +++IY S   SN+ V+
Sbjct: 519 SKLVNKRNNAKIYTSSVNSNLTVN 542


>DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor
           protein.
          Length = 459

 Score = 21.4 bits (43), Expect = 9.1
 Identities = 9/18 (50%), Positives = 10/18 (55%)
 Frame = +1

Query: 61  LTKCILLFGTGHNHFLYN 114
           LT C+  F T  N  LYN
Sbjct: 300 LTGCLYYFSTTINPILYN 317


>AB208108-1|BAE72140.1|   92|Apis mellifera Broad complex zinc
           finger domain-Z3 isoform protein.
          Length = 92

 Score = 21.4 bits (43), Expect = 9.1
 Identities = 8/12 (66%), Positives = 9/12 (75%)
 Frame = -2

Query: 343 RRYRNQNIRTTH 308
           RRYR +N  TTH
Sbjct: 43  RRYRTKNSLTTH 54


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 182,797
Number of Sequences: 438
Number of extensions: 3553
Number of successful extensions: 8
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22901220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)