Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte16e14
         (739 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL021497-16|CAD27618.1| 1131|Caenorhabditis elegans Hypothetical...    28   7.9  
AL021497-15|CAD27617.1| 1118|Caenorhabditis elegans Hypothetical...    28   7.9  
AL021497-14|CAB54459.2| 1140|Caenorhabditis elegans Hypothetical...    28   7.9  
AF431893-1|AAL28104.1| 1131|Caenorhabditis elegans large-conduct...    28   7.9  
AF431892-1|AAL28103.1| 1118|Caenorhabditis elegans large-conduct...    28   7.9  
AF431891-1|AAL28102.1| 1140|Caenorhabditis elegans large-conduct...    28   7.9  

>AL021497-16|CAD27618.1| 1131|Caenorhabditis elegans Hypothetical
           protein Y51A2D.19c protein.
          Length = 1131

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 9/13 (69%), Positives = 12/13 (92%)
 Frame = -2

Query: 210 NVFFLIYFFIAFV 172
           N+FFL+YFFI F+
Sbjct: 186 NIFFLVYFFIRFI 198


>AL021497-15|CAD27617.1| 1118|Caenorhabditis elegans Hypothetical
           protein Y51A2D.19b protein.
          Length = 1118

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 9/13 (69%), Positives = 12/13 (92%)
 Frame = -2

Query: 210 NVFFLIYFFIAFV 172
           N+FFL+YFFI F+
Sbjct: 186 NIFFLVYFFIRFI 198


>AL021497-14|CAB54459.2| 1140|Caenorhabditis elegans Hypothetical
           protein Y51A2D.19a protein.
          Length = 1140

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 9/13 (69%), Positives = 12/13 (92%)
 Frame = -2

Query: 210 NVFFLIYFFIAFV 172
           N+FFL+YFFI F+
Sbjct: 186 NIFFLVYFFIRFI 198


>AF431893-1|AAL28104.1| 1131|Caenorhabditis elegans
           large-conductance calcium-activatedpotassium channel
           SLO-1c protein.
          Length = 1131

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 9/13 (69%), Positives = 12/13 (92%)
 Frame = -2

Query: 210 NVFFLIYFFIAFV 172
           N+FFL+YFFI F+
Sbjct: 186 NIFFLVYFFIRFI 198


>AF431892-1|AAL28103.1| 1118|Caenorhabditis elegans
           large-conductance calcium-activatedpotassium channel
           SLO-1b protein.
          Length = 1118

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 9/13 (69%), Positives = 12/13 (92%)
 Frame = -2

Query: 210 NVFFLIYFFIAFV 172
           N+FFL+YFFI F+
Sbjct: 186 NIFFLVYFFIRFI 198


>AF431891-1|AAL28102.1| 1140|Caenorhabditis elegans
           large-conductance calcium-activatedpotassium channel
           SLO-1a protein.
          Length = 1140

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 9/13 (69%), Positives = 12/13 (92%)
 Frame = -2

Query: 210 NVFFLIYFFIAFV 172
           N+FFL+YFFI F+
Sbjct: 186 NIFFLVYFFIRFI 198


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,592,712
Number of Sequences: 27780
Number of extensions: 273915
Number of successful extensions: 498
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 495
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 498
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1735436670
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)