Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte16e12
         (834 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z69658-1|CAA93481.1|  418|Caenorhabditis elegans Hypothetical pr...    32   0.44 
U70856-1|AAB09165.1|  327|Caenorhabditis elegans Hypothetical pr...    29   3.1  
AL031632-7|CAA21009.2| 1528|Caenorhabditis elegans Hypothetical ...    29   3.1  
Z14092-11|CAI46627.1|  817|Caenorhabditis elegans Hypothetical p...    29   4.1  
AL132860-25|CAB60510.1|  413|Caenorhabditis elegans Hypothetical...    29   4.1  
Z70038-7|CAA93886.2|  373|Caenorhabditis elegans Hypothetical pr...    28   7.2  
Z54270-7|CAE48496.1|  492|Caenorhabditis elegans Hypothetical pr...    28   7.2  
Z54270-6|CAA91028.1|  572|Caenorhabditis elegans Hypothetical pr...    28   7.2  
AF179215-1|AAF67039.1|  492|Caenorhabditis elegans NHR-25 beta p...    28   7.2  
AF179214-1|AAF67038.1|  568|Caenorhabditis elegans NHR-25 alpha ...    28   7.2  
Z80789-4|CAC35816.1|  350|Caenorhabditis elegans Hypothetical pr...    28   9.5  
Z71267-8|CAL44974.1|  162|Caenorhabditis elegans Hypothetical pr...    28   9.5  
Z69788-9|CAC35811.1|  350|Caenorhabditis elegans Hypothetical pr...    28   9.5  
Z69788-6|CAD44118.1|  324|Caenorhabditis elegans Hypothetical pr...    28   9.5  
Z69788-5|CAD44117.1|  314|Caenorhabditis elegans Hypothetical pr...    28   9.5  
Z69788-4|CAA93647.1|  341|Caenorhabditis elegans Hypothetical pr...    28   9.5  
Z69788-3|CAA93648.1|  300|Caenorhabditis elegans Hypothetical pr...    28   9.5  

>Z69658-1|CAA93481.1|  418|Caenorhabditis elegans Hypothetical
           protein C36H8.1 protein.
          Length = 418

 Score = 32.3 bits (70), Expect = 0.44
 Identities = 24/70 (34%), Positives = 31/70 (44%), Gaps = 1/70 (1%)
 Frame = +2

Query: 47  SGPLLPVAPSSPEEQQHFSDVFAEVPRTMPFNSQTINLFP-PVEPETSARPDELPS*FCK 223
           + P  P AP     ++    V A V +  P  +   +  P PVEP   A P +LPS    
Sbjct: 194 AAPPPPPAPMPVPVEKAPEPVPAPVEQIAPPPAPVQDPAPAPVEPSDPAPPSKLPSPSKS 253

Query: 224 CADSAAGSAR 253
           C D A GS R
Sbjct: 254 CTDLAGGSQR 263


>U70856-1|AAB09165.1|  327|Caenorhabditis elegans Hypothetical
           protein F57F4.2 protein.
          Length = 327

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 16/34 (47%), Positives = 20/34 (58%)
 Frame = -1

Query: 498 KSADGNSGAEEGGSKKKDENENQLKRTKSRELRG 397
           +S DG+ G EEG S KK++  N LKR    E  G
Sbjct: 110 QSRDGDEGEEEG-SDKKEKKGNPLKREHGDEGEG 142


>AL031632-7|CAA21009.2| 1528|Caenorhabditis elegans Hypothetical
            protein Y32B12B.4 protein.
          Length = 1528

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 17/46 (36%), Positives = 25/46 (54%)
 Frame = -2

Query: 545  NVTMVATSQHYGFRKKSRPMETAERRRVAPKKRMKTKIS*RELKAV 408
            NV +VA S    +RK+ +   T + + VAPKKR  + +    L AV
Sbjct: 1285 NVPVVAQSARRAYRKRIKT--TTDAKTVAPKKRSSSSMRSESLPAV 1328


>Z14092-11|CAI46627.1|  817|Caenorhabditis elegans Hypothetical
           protein R107.4d protein.
          Length = 817

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 15/38 (39%), Positives = 20/38 (52%)
 Frame = -1

Query: 510 F*KKKSADGNSGAEEGGSKKKDENENQLKRTKSRELRG 397
           F KK+  +GN G +    +   ENE Q KR K R+  G
Sbjct: 777 FKKKRRENGNEGGDNDVCRICCENERQEKREKKRKSSG 814


>AL132860-25|CAB60510.1|  413|Caenorhabditis elegans Hypothetical
           protein Y56A3A.31 protein.
          Length = 413

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 15/27 (55%), Positives = 20/27 (74%)
 Frame = -2

Query: 197 LVGLKSPAPLAGTGLLSAN*KASSSEP 117
           L G +S APLAG+G+L++N  A SS P
Sbjct: 6   LGGAESAAPLAGSGVLASN-SAGSSPP 31


>Z70038-7|CAA93886.2|  373|Caenorhabditis elegans Hypothetical
           protein ZK1067.7 protein.
          Length = 373

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 10/35 (28%), Positives = 20/35 (57%)
 Frame = -1

Query: 123 GTSANTSEKCCCSSGEDGATGSNGPLSSLPVLLMK 19
           G + + +++ CCSS  +   G+N  +  +PV L +
Sbjct: 34  GLALSRAKRQCCSSNSNSCCGNNNNVQCIPVCLQQ 68


>Z54270-7|CAE48496.1|  492|Caenorhabditis elegans Hypothetical
           protein F11C1.6b protein.
          Length = 492

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 14/45 (31%), Positives = 27/45 (60%), Gaps = 2/45 (4%)
 Frame = +2

Query: 47  SGPLLPVAPSSPEEQ-QHF-SDVFAEVPRTMPFNSQTINLFPPVE 175
           + P+LP+ P+  E+   HF +   AE+ +T+P ++Q   +F  V+
Sbjct: 217 TSPILPLCPAPTEKTVDHFYNSSIAEMCKTLPDDAQIARIFTSVK 261


>Z54270-6|CAA91028.1|  572|Caenorhabditis elegans Hypothetical
           protein F11C1.6a protein.
          Length = 572

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 14/45 (31%), Positives = 27/45 (60%), Gaps = 2/45 (4%)
 Frame = +2

Query: 47  SGPLLPVAPSSPEEQ-QHF-SDVFAEVPRTMPFNSQTINLFPPVE 175
           + P+LP+ P+  E+   HF +   AE+ +T+P ++Q   +F  V+
Sbjct: 297 TSPILPLCPAPTEKTVDHFYNSSIAEMCKTLPDDAQIARIFTSVK 341


>AF179215-1|AAF67039.1|  492|Caenorhabditis elegans NHR-25 beta
           protein.
          Length = 492

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 14/45 (31%), Positives = 27/45 (60%), Gaps = 2/45 (4%)
 Frame = +2

Query: 47  SGPLLPVAPSSPEEQ-QHF-SDVFAEVPRTMPFNSQTINLFPPVE 175
           + P+LP+ P+  E+   HF +   AE+ +T+P ++Q   +F  V+
Sbjct: 217 TSPILPLCPAPTEKTVDHFYNSSIAEMCKTLPDDAQIARIFTSVK 261


>AF179214-1|AAF67038.1|  568|Caenorhabditis elegans NHR-25 alpha
           protein.
          Length = 568

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 14/45 (31%), Positives = 27/45 (60%), Gaps = 2/45 (4%)
 Frame = +2

Query: 47  SGPLLPVAPSSPEEQ-QHF-SDVFAEVPRTMPFNSQTINLFPPVE 175
           + P+LP+ P+  E+   HF +   AE+ +T+P ++Q   +F  V+
Sbjct: 293 TSPILPLCPAPTEKTVDHFYNSSIAEMCKTLPDDAQIARIFTSVK 337


>Z80789-4|CAC35816.1|  350|Caenorhabditis elegans Hypothetical
           protein F09A5.4c protein.
          Length = 350

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 13/43 (30%), Positives = 21/43 (48%)
 Frame = +2

Query: 83  EEQQHFSDVFAEVPRTMPFNSQTINLFPPVEPETSARPDELPS 211
           ++Q+   +   EV   +P  SQT++L  P  P    R   +PS
Sbjct: 284 KDQEQVDECVTEVRPILPVLSQTLSLDDPDHPHDGDRSSRVPS 326


>Z71267-8|CAL44974.1|  162|Caenorhabditis elegans Hypothetical
           protein W01A8.8 protein.
          Length = 162

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 14/49 (28%), Positives = 20/49 (40%)
 Frame = -3

Query: 811 CILLQFMCTPCGPMVCYKYEDCGPPLQCLPRSAFKRNGLQDCQFFQQGS 665
           C L+  +     P +C KYE      +C P       GL++C  F   S
Sbjct: 13  CTLISVISAKPDPEICEKYEVVEQKFKCGPDGYPLHFGLRNCLMFNNQS 61


>Z69788-9|CAC35811.1|  350|Caenorhabditis elegans Hypothetical
           protein F09A5.4c protein.
          Length = 350

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 13/43 (30%), Positives = 21/43 (48%)
 Frame = +2

Query: 83  EEQQHFSDVFAEVPRTMPFNSQTINLFPPVEPETSARPDELPS 211
           ++Q+   +   EV   +P  SQT++L  P  P    R   +PS
Sbjct: 284 KDQEQVDECVTEVRPILPVLSQTLSLDDPDHPHDGDRSSRVPS 326


>Z69788-6|CAD44118.1|  324|Caenorhabditis elegans Hypothetical
           protein F09A5.4e protein.
          Length = 324

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 13/43 (30%), Positives = 21/43 (48%)
 Frame = +2

Query: 83  EEQQHFSDVFAEVPRTMPFNSQTINLFPPVEPETSARPDELPS 211
           ++Q+   +   EV   +P  SQT++L  P  P    R   +PS
Sbjct: 258 KDQEQVDECVTEVRPILPVLSQTLSLDDPDHPHDGDRSSRVPS 300


>Z69788-5|CAD44117.1|  314|Caenorhabditis elegans Hypothetical
           protein F09A5.4d protein.
          Length = 314

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 13/43 (30%), Positives = 21/43 (48%)
 Frame = +2

Query: 83  EEQQHFSDVFAEVPRTMPFNSQTINLFPPVEPETSARPDELPS 211
           ++Q+   +   EV   +P  SQT++L  P  P    R   +PS
Sbjct: 248 KDQEQVDECVTEVRPILPVLSQTLSLDDPDHPHDGDRSSRVPS 290


>Z69788-4|CAA93647.1|  341|Caenorhabditis elegans Hypothetical
           protein F09A5.4b protein.
          Length = 341

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 13/43 (30%), Positives = 21/43 (48%)
 Frame = +2

Query: 83  EEQQHFSDVFAEVPRTMPFNSQTINLFPPVEPETSARPDELPS 211
           ++Q+   +   EV   +P  SQT++L  P  P    R   +PS
Sbjct: 275 KDQEQVDECVTEVRPILPVLSQTLSLDDPDHPHDGDRSSRVPS 317


>Z69788-3|CAA93648.1|  300|Caenorhabditis elegans Hypothetical
           protein F09A5.4a protein.
          Length = 300

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 13/43 (30%), Positives = 21/43 (48%)
 Frame = +2

Query: 83  EEQQHFSDVFAEVPRTMPFNSQTINLFPPVEPETSARPDELPS 211
           ++Q+   +   EV   +P  SQT++L  P  P    R   +PS
Sbjct: 234 KDQEQVDECVTEVRPILPVLSQTLSLDDPDHPHDGDRSSRVPS 276


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,698,377
Number of Sequences: 27780
Number of extensions: 428413
Number of successful extensions: 1409
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1286
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1406
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2072006206
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)