Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte16e11
         (838 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1183.07 |||U3 snoRNP-associated protein Rrp5|Schizosaccharom...    29   0.82 
SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase Ino80|Schizo...    29   0.82 
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual    28   1.4  
SPAC17A5.12 |ucp7||UBA/TPR/DNAJ domain protein Ucp7|Schizosaccha...    28   1.4  
SPCC622.13c |||conserved eukaryotic protein|Schizosaccharomyces ...    28   1.9  
SPAC23G3.08c |ubp7||ubiquitin C-terminal hydrolase Ubp7|Schizosa...    27   4.4  
SPBC13G1.10c |mug81||ATP-dependent RNA helicase Slh1|Schizosacch...    26   7.6  

>SPCC1183.07 |||U3 snoRNP-associated protein Rrp5|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 1690

 Score = 29.1 bits (62), Expect = 0.82
 Identities = 21/55 (38%), Positives = 29/55 (52%), Gaps = 7/55 (12%)
 Frame = -3

Query: 359  FRGLLSN----LNL--PLVD-NFRQLQPLFGRRVFVRITSKNPKFKKTKLHYSKW 216
            F GLLS+    L+L   L+D   +Q  P   RR+F R+ + N   KK K  + KW
Sbjct: 1605 FEGLLSSYPKRLDLWNVLIDMEMKQDDPSIVRRLFQRLLALNLSTKKAKFAFKKW 1659


>SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase
           Ino80|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1604

 Score = 29.1 bits (62), Expect = 0.82
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = -3

Query: 821 STLHLWRSP*TTSMRSMVCISHWGDKNNR 735
           STLH W+   T  +  + CI +WG   +R
Sbjct: 901 STLHNWQQEITRFVPKLKCIPYWGSTKDR 929


>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1236

 Score = 28.3 bits (60), Expect = 1.4
 Identities = 17/48 (35%), Positives = 25/48 (52%)
 Frame = -1

Query: 313 SGSYNRCLVAVSSSESHQRTLSSRRPNSTTPNGTGLDTRSPKMTSSTS 170
           S S  +   +V+SS     + SS +P S+TP  +     SP+ T STS
Sbjct: 453 STSVKQPTASVASSSVSVPSSSSVQPQSSTPISSSSSASSPQSTLSTS 500


>SPAC17A5.12 |ucp7||UBA/TPR/DNAJ domain protein
           Ucp7|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 697

 Score = 28.3 bits (60), Expect = 1.4
 Identities = 16/41 (39%), Positives = 27/41 (65%), Gaps = 2/41 (4%)
 Frame = -1

Query: 301 NRCLVAVS--SSESHQRTLSSRRPNSTTPNGTGLDTRSPKM 185
           +RC  A+S  SSESH +  ++++P S TPN T +  +S ++
Sbjct: 541 HRCEAAISSHSSESHSKR-TTQQPKS-TPNHTNIKVKSERL 579


>SPCC622.13c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1098

 Score = 27.9 bits (59), Expect = 1.9
 Identities = 16/56 (28%), Positives = 28/56 (50%), Gaps = 6/56 (10%)
 Frame = -1

Query: 301 NRCLVAVSSSESHQRTLSSRRP------NSTTPNGTGLDTRSPKMTSSTSMNKYIY 152
           NR    +S S    +TL    P      +   P  +G+D+ S K+ +S++ N+YI+
Sbjct: 401 NRLKSLLSISSHLPKTLQLMEPLLDGILSQLVPKSSGIDSNSQKLLTSSTSNEYIH 456


>SPAC23G3.08c |ubp7||ubiquitin C-terminal hydrolase
           Ubp7|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 875

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 13/22 (59%), Positives = 17/22 (77%)
 Frame = -3

Query: 581 KLLSPIVKNLTAIENFNSTLQL 516
           K++SP +KNL A   FNSTLQ+
Sbjct: 204 KVISPGLKNLGATCFFNSTLQV 225


>SPBC13G1.10c |mug81||ATP-dependent RNA helicase
           Slh1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1935

 Score = 25.8 bits (54), Expect = 7.6
 Identities = 14/65 (21%), Positives = 35/65 (53%)
 Frame = +3

Query: 3   KLTHYITYITRKYTVHT**N*LVTNTIWYHWYFKRVTPVPYYLSVVIGYIYIYLFIEVDD 182
           KL+HYI+ +T++  + +     + + +        VT +   +S  +GY Y+Y+ +  + 
Sbjct: 681 KLSHYISVVTQQSPIESRFTDRLVDNLNAEVSLGTVTNIDEAVSW-LGYTYLYIRMRRNP 739

Query: 183 VIFGL 197
           +++G+
Sbjct: 740 LVYGI 744


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,658,568
Number of Sequences: 5004
Number of extensions: 81107
Number of successful extensions: 252
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 234
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 252
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 412451140
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)