Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte16e11
(838 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_04_0092 + 19655747-19655825,19656362-19656567,19656990-196570... 57 2e-08
12_01_0343 + 2640822-2641106,2641488-2641556,2641708-2641887,264... 55 6e-08
04_03_0863 + 20397161-20397239,20397464-20397672,20397768-203978... 54 1e-07
08_02_0711 + 20305341-20305859,20306278-20306448,20306995-203070... 54 1e-07
09_04_0371 - 17020539-17020607,17020697-17020747,17020888-170210... 52 6e-07
08_02_0970 - 23140109-23140192,23140604-23140657,23140783-231407... 51 1e-06
11_01_0330 + 2472195-2472743 49 4e-06
08_02_0710 + 20275834-20276352,20276970-20277140,20277692-202777... 48 9e-06
08_02_0967 - 23110154-23110240,23110620-23110673,23111010-231111... 46 5e-05
08_02_0714 + 20343864-20344385,20344928-20345098,20345933-203459... 44 2e-04
03_02_0303 - 7261340-7261807 31 1.5
03_05_0807 + 27849637-27849823,27850002-27850294,27850736-278509... 30 2.0
03_01_0317 + 2492030-2492591,2493189-2493249,2493951-2494066,249... 30 2.6
03_02_0665 - 10268959-10269148,10269344-10269936,10270572-102710... 29 4.6
10_01_0253 + 2661264-2661872,2662055-2662875,2662959-2663340 28 8.0
07_03_1468 - 26739872-26740912 28 8.0
06_03_0992 - 26680555-26680840,26680893-26681279,26681364-266824... 28 8.0
01_06_1391 + 36992276-36992476,36992609-36992794,36993215-369933... 28 8.0
>02_04_0092 +
19655747-19655825,19656362-19656567,19656990-19657096,
19657189-19657291,19657699-19657881,19657972-19658094
Length = 266
Score = 56.8 bits (131), Expect = 2e-08
Identities = 46/151 (30%), Positives = 70/151 (46%)
Frame = -3
Query: 731 SEHTLNDMRLPLEMHIIHRNKKYRNTAEAMQHPDGLCVLAFFYQVVEFDAKLLSPIVKNL 552
SEHT+N R +E+H++H + T A+ + G F +Q+ + KL + ++
Sbjct: 123 SEHTINGQRFAVELHMVHHSDDGNITVIAVLYRHGKPD-PFLFQIKD---KLAALYLEGC 178
Query: 551 TAIENFNSTLQLPHTFSLSSILSGLDTERFYTYKGSLTTPPCAEAVTWVIFSDYLPISVF 372
A + + L + + G D R++ Y GSLTTPPC E V W IF + I
Sbjct: 179 KAEKGEPLPVGL---VDMRELKKGAD--RYFRYVGSLTTPPCTENVIWNIFGE---IREM 230
Query: 371 QMDNFRGLLSNLNLPLVDNFRQLQPLFGRRV 279
+ L + L+ N R QPL GR V
Sbjct: 231 TKEQAAALRAPLHGSYRHNRRPTQPLNGRTV 261
>12_01_0343 +
2640822-2641106,2641488-2641556,2641708-2641887,
2642015-2642081,2643237-2644015
Length = 459
Score = 55.2 bits (127), Expect = 6e-08
Identities = 52/155 (33%), Positives = 71/155 (45%), Gaps = 3/155 (1%)
Frame = -3
Query: 731 SEHTLNDMRLPLEMHIIHRNKKYRNTAEAMQHPDGLCVLAFFYQVVEFDAKLLS--PIVK 558
SEHT+N R PLE+H++H++ GL V++ Y++ D+ L +
Sbjct: 305 SEHTINGRRFPLELHLVHKSDA----------DGGLAVISVLYKLGAPDSFYLQFKDHLA 354
Query: 557 NLTAIENFNSTLQLPHTFSLSSILS-GLDTERFYTYKGSLTTPPCAEAVTWVIFSDYLPI 381
L A E S + L + S T ++ Y GSLTTPPC E V W + I
Sbjct: 355 ELGADECDFSKEEAHVAAGLVQMRSLQKRTGSYFRYGGSLTTPPCGENVVWSVLGKVREI 414
Query: 380 SVFQMDNFRGLLSNLNLPLVDNFRQLQPLFGRRVF 276
S Q+ LL + LP D R QPL GR VF
Sbjct: 415 SQEQLH----LLMS-PLPTKD-ARPAQPLNGRAVF 443
>04_03_0863 +
20397161-20397239,20397464-20397672,20397768-20397874,
20397996-20398098,20398236-20398412,20398549-20398704
Length = 276
Score = 54.4 bits (125), Expect = 1e-07
Identities = 39/111 (35%), Positives = 51/111 (45%), Gaps = 1/111 (0%)
Frame = -3
Query: 731 SEHTLNDMRLPLEMHIIHRNKKYRNTAEAMQHPDGLCVLAFFYQVVEFDAKLLSPIVKNL 552
SEHT+N R PLE+H++H N+ + VLAF Y+ D + L
Sbjct: 124 SEHTINGFRFPLELHMVHTNEN-----------GNITVLAFLYRFGRPDPFFEQDKLAAL 172
Query: 551 TAIENFNSTLQLP-HTFSLSSILSGLDTERFYTYKGSLTTPPCAEAVTWVI 402
A E + P S+S + +Y Y GSLTTPPCAE V W I
Sbjct: 173 NA-EGCKAEKGSPVPAGSVSLLTMRQHVHIYYRYVGSLTTPPCAENVIWNI 222
>08_02_0711 +
20305341-20305859,20306278-20306448,20306995-20307048,
20307389-20307475
Length = 276
Score = 54.0 bits (124), Expect = 1e-07
Identities = 43/152 (28%), Positives = 69/152 (45%), Gaps = 5/152 (3%)
Frame = -3
Query: 731 SEHTLNDMRLPLEMHIIHRNKKYRNTAEAMQHPDGLCVLAFFYQVVEFDAKLLSPIVKNL 552
SEHT++ R +E+H++H N + N A V+ Y + + L + +
Sbjct: 130 SEHTIDGRRYDMELHMVHLNAQ--NQA---------AVIGILYTIGTTPDEFLQKMEPYI 178
Query: 551 TAIENFNSTLQLPHTFSLSSILSGLDTERFYTYKGSLTTPPCAEAVTWVIFSDYLPISVF 372
AI N ++ + ++ G DT +Y Y GS TTPPC E V W + +S+
Sbjct: 179 IAISNQEGKEKMVVGGADPNVAKGKDTV-YYRYMGSFTTPPCTEGVIWTVVRKVHTVSLS 237
Query: 371 QMDNFRG--LLSNLN--LPLVD-NFRQLQPLF 291
Q+ + L+ N N PL D N R++ F
Sbjct: 238 QITLLKAAVLMGNENNARPLQDVNNREIDLFF 269
>09_04_0371 -
17020539-17020607,17020697-17020747,17020888-17021058,
17023296-17023404,17023570-17023676,17024429-17024640,
17024805-17024952
Length = 288
Score = 52.0 bits (119), Expect = 6e-07
Identities = 50/161 (31%), Positives = 68/161 (42%), Gaps = 1/161 (0%)
Frame = -3
Query: 758 HWGDKNNRGSEHTLNDMRLPLEMHIIHRNKKYRNTAEAMQHPDGLCVLAFFYQVVEFDAK 579
HW + SEHT+N R EMH++H + ++ L A V +
Sbjct: 143 HWHEP----SEHTINGTRFDAEMHMVHEDPSMARAVVSVL----LSTKAGQPNAVLTE-- 192
Query: 578 LLSPIVKNLTAIENFNSTLQLPHTFSLSSILSGLD-TERFYTYKGSLTTPPCAEAVTWVI 402
++P KNL E ++ P S + +D T +Y Y GSLTTPPC E V W I
Sbjct: 193 -MAPHFKNLAGKEKAEEEVKEPVDPS-----TWVDKTSGYYRYDGSLTTPPCTEGVIWTI 246
Query: 401 FSDYLPISVFQMDNFRGLLSNLNLPLVDNFRQLQPLFGRRV 279
S S Q+D LL + + N R Q L R V
Sbjct: 247 MSKIGDASKEQID----LLKTVATTVEPNARPAQKLNDRIV 283
>08_02_0970 -
23140109-23140192,23140604-23140657,23140783-23140794,
23140842-23141009,23141371-23141473,23141574-23141680,
23143766-23143977,23144136-23144223
Length = 275
Score = 51.2 bits (117), Expect = 1e-06
Identities = 43/161 (26%), Positives = 74/161 (45%), Gaps = 6/161 (3%)
Frame = -3
Query: 731 SEHTLNDMRLPLEMHIIHRNKKYRNTAEAMQHPDGLCVLAFFYQVVEFDAKLL--SPIVK 558
SEHT+N R +E+H++H + NTA V+ YQ+ D LL P ++
Sbjct: 128 SEHTVNGRRYDMELHLVHDDGN-SNTA----------VIGNLYQIGNPDPFLLMLEPFIR 176
Query: 557 NLTAIENFNSTLQLPHTFSLSSILSGLDTERFYTYKGSLTTPPCAEAVTWVIFSDYL--- 387
+ ++ + + + + L+ +Y Y GSLTTPPC E V W +F
Sbjct: 177 RIADTKDKSEPIGV-----VDPQLAKSPDAVYYRYMGSLTTPPCTEGVIWTVFKRVFLLA 231
Query: 386 -PISVFQMDNFRGLLSNLNLPLVDNFRQLQPLFGRRVFVRI 267
++ +Q+D R +++ +N R LQ + R + + I
Sbjct: 232 QTVAQYQLDLLREAVAD---GYENNARPLQKVNNRNISIFI 269
>11_01_0330 + 2472195-2472743
Length = 182
Score = 49.2 bits (112), Expect = 4e-06
Identities = 48/151 (31%), Positives = 67/151 (44%)
Frame = -3
Query: 731 SEHTLNDMRLPLEMHIIHRNKKYRNTAEAMQHPDGLCVLAFFYQVVEFDAKLLSPIVKNL 552
SEHT+N + PLE+ ++H A+ + G +F++Q+ A+L +
Sbjct: 32 SEHTINGEKHPLELQMVHAAADGSLAVIAILYKYG-APDSFYFQLKRKLAELAADGCS-- 88
Query: 551 TAIENFNSTLQLPHTFSLSSILSGLDTERFYTYKGSLTTPPCAEAVTWVIFSDYLPISVF 372
EN L L H SL T ++ Y GSLT PPC E V W + IS
Sbjct: 89 FGEENAQVALGLVHLRSLQK-----RTGSYFRYAGSLTAPPCTEDVFWSVLGKIRQISQE 143
Query: 371 QMDNFRGLLSNLNLPLVDNFRQLQPLFGRRV 279
Q+ L++ L LP R QPL GR V
Sbjct: 144 QV----ALITAL-LP-AGGARPTQPLNGRTV 168
>08_02_0710 +
20275834-20276352,20276970-20277140,20277692-20277745,
20277848-20277934
Length = 276
Score = 48.0 bits (109), Expect = 9e-06
Identities = 39/151 (25%), Positives = 66/151 (43%)
Frame = -3
Query: 731 SEHTLNDMRLPLEMHIIHRNKKYRNTAEAMQHPDGLCVLAFFYQVVEFDAKLLSPIVKNL 552
SEHT++ R +E+H++H N + N A V+ Y + D + L + +
Sbjct: 131 SEHTIDGRRYDMELHMVHLNAQ--NQA---------AVIGILYTIGTRD-EFLQKLEPYI 178
Query: 551 TAIENFNSTLQLPHTFSLSSILSGLDTERFYTYKGSLTTPPCAEAVTWVIFSDYLPISVF 372
I ++ + ++ G DT +Y Y GS TTPPC E V W + +S+
Sbjct: 179 IEISKQEGKERVIIGGADPNVAKGQDTV-YYRYMGSFTTPPCTEGVIWTVVRKVRTVSLS 237
Query: 371 QMDNFRGLLSNLNLPLVDNFRQLQPLFGRRV 279
Q+ + + N +N R LQ + R +
Sbjct: 238 QITLLKAAVLTGN---ENNARPLQGVNNREI 265
>08_02_0967 -
23110154-23110240,23110620-23110673,23111010-23111177,
23111432-23111534,23111664-23111988,23112091-23112181
Length = 275
Score = 45.6 bits (103), Expect = 5e-05
Identities = 37/155 (23%), Positives = 68/155 (43%), Gaps = 2/155 (1%)
Frame = -3
Query: 731 SEHTLNDMRLPLEMHIIHRNKKYRNTAEAMQHPDGLCVLAFFYQVVEFDAKL--LSPIVK 558
+EH+++ R +E+H++H + + + V+ Y+V D L + P +K
Sbjct: 131 TEHSVDGRRYDMELHMVHESAEKK-----------AAVIGLLYEVGRPDRFLQKMEPYLK 179
Query: 557 NLTAIENFNSTLQLPHTFSLSSILSGLDTERFYTYKGSLTTPPCAEAVTWVIFSDYLPIS 378
+ E+ + + S +Y Y GSLTTPPC + V W I +S
Sbjct: 180 MIADKEDREEKVGMIDPRGARGRASV-----YYRYMGSLTTPPCTQGVVWTIVKRVRTVS 234
Query: 377 VFQMDNFRGLLSNLNLPLVDNFRQLQPLFGRRVFV 273
+Q+D R + + + +N R LQ + R + +
Sbjct: 235 RYQLDLLREAVHD---EMENNARPLQAVNNRDISI 266
>08_02_0714 +
20343864-20344385,20344928-20345098,20345933-20345986,
20346300-20346386
Length = 277
Score = 43.6 bits (98), Expect = 2e-04
Identities = 38/151 (25%), Positives = 65/151 (43%)
Frame = -3
Query: 731 SEHTLNDMRLPLEMHIIHRNKKYRNTAEAMQHPDGLCVLAFFYQVVEFDAKLLSPIVKNL 552
SEH ++ R +E+H++H N + + + + G F +++ + ++ K+
Sbjct: 132 SEHAVDGRRYDMELHMVHLNTQNQTAVVGILYAIG-AQDEFLHKLEPYIIEVADQ--KDK 188
Query: 551 TAIENFNSTLQLPHTFSLSSILSGLDTERFYTYKGSLTTPPCAEAVTWVIFSDYLPISVF 372
I N P+ I+ +Y Y GSLTTPPC E V W I +S+
Sbjct: 189 EKIVNGGVD---PNVAKEHDIV-------YYRYMGSLTTPPCTEGVIWTIVRKVHTVSLS 238
Query: 371 QMDNFRGLLSNLNLPLVDNFRQLQPLFGRRV 279
Q+ + + N N N R LQ + R +
Sbjct: 239 QLALLKAAVVNGN---EKNARPLQDVNNRNI 266
>03_02_0303 - 7261340-7261807
Length = 155
Score = 30.7 bits (66), Expect = 1.5
Identities = 14/29 (48%), Positives = 17/29 (58%)
Frame = -1
Query: 289 VAVSSSESHQRTLSSRRPNSTTPNGTGLD 203
V V S ES +R L +RPN + NG G D
Sbjct: 24 VFVPSPESFRRVLKLQRPNDSATNGNGAD 52
>03_05_0807 +
27849637-27849823,27850002-27850294,27850736-27850973,
27851075-27851410,27851496-27851581,27851678-27851785,
27851878-27852185,27852265-27852528,27852610-27853381
Length = 863
Score = 30.3 bits (65), Expect = 2.0
Identities = 21/67 (31%), Positives = 31/67 (46%), Gaps = 5/67 (7%)
Frame = -3
Query: 662 RNTAEAMQHPDGL-CVLAFFYQVVEFDAKLLS----PIVKNLTAIENFNSTLQLPHTFSL 498
R+T E P L F Q+VE ++K+L+ P++KN NF TL P+T
Sbjct: 786 RDTPEWTSDPKALEAFKRFSRQLVEIESKVLNMNKDPLLKNRVGPANFPYTLMFPNTSDN 845
Query: 497 SSILSGL 477
G+
Sbjct: 846 KGAAEGI 852
>03_01_0317 +
2492030-2492591,2493189-2493249,2493951-2494066,
2494662-2495176
Length = 417
Score = 29.9 bits (64), Expect = 2.6
Identities = 14/33 (42%), Positives = 19/33 (57%), Gaps = 4/33 (12%)
Frame = -3
Query: 299 PLFGRRVFVRITSKNPKFKKT----KLHYSKWD 213
PL R+ F + +P+F +T LHYSKWD
Sbjct: 280 PLPHRKYFQTVLCNSPEFNRTVVNHDLHYSKWD 312
>03_02_0665 -
10268959-10269148,10269344-10269936,10270572-10271004,
10271172-10272040,10272121-10272915,10273612-10273829,
10274931-10275230,10276834-10277161
Length = 1241
Score = 29.1 bits (62), Expect = 4.6
Identities = 11/25 (44%), Positives = 17/25 (68%)
Frame = +3
Query: 732 SSVVLVTPVGNADHRSHTRCLGGPP 806
+S +V P G+AD + + RC+G PP
Sbjct: 34 TSRTVVAPEGSADPQPYRRCVGDPP 58
>10_01_0253 + 2661264-2661872,2662055-2662875,2662959-2663340
Length = 603
Score = 28.3 bits (60), Expect = 8.0
Identities = 11/32 (34%), Positives = 16/32 (50%)
Frame = -1
Query: 268 SHQRTLSSRRPNSTTPNGTGLDTRSPKMTSST 173
S TL+ R P + PNG G+ +P + T
Sbjct: 533 SSNETLAEREPKTEVPNGGGISAAAPLSSDET 564
>07_03_1468 - 26739872-26740912
Length = 346
Score = 28.3 bits (60), Expect = 8.0
Identities = 18/54 (33%), Positives = 24/54 (44%)
Frame = -1
Query: 805 GGPPRQRV*DRWSAFPTGVTRTTEDRSTH*TICVFLWKCTSSIGIRNTETPRKL 644
GG V RW+A T T TT++ H + + C S G TE+ R L
Sbjct: 171 GGNIAHHVAQRWTATATTTTTTTDNPVVHLAGVILIQPCFS--GEERTESERAL 222
>06_03_0992 -
26680555-26680840,26680893-26681279,26681364-26682441,
26682537-26683083
Length = 765
Score = 28.3 bits (60), Expect = 8.0
Identities = 14/32 (43%), Positives = 19/32 (59%)
Frame = +2
Query: 743 SCHPSGKCRPSISYSLSRGTSKDVR*TGSLSS 838
S HPSG P+ + LSRGTS R + L++
Sbjct: 15 SSHPSGSPAPNSAADLSRGTSGPARASNLLNA 46
>01_06_1391 +
36992276-36992476,36992609-36992794,36993215-36993327,
36993504-36993687,36993799-36993900
Length = 261
Score = 28.3 bits (60), Expect = 8.0
Identities = 13/29 (44%), Positives = 19/29 (65%)
Frame = -3
Query: 524 LQLPHTFSLSSILSGLDTERFYTYKGSLT 438
L LP++FS +LSG+ + FY + GS T
Sbjct: 73 LTLPYSFSQLGMLSGVLLQLFYGFMGSWT 101
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,936,927
Number of Sequences: 37544
Number of extensions: 536617
Number of successful extensions: 1286
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 1236
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1280
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2315199948
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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