Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte16e11
(838 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U39743-2|AAA80437.6| 310|Caenorhabditis elegans Carbonic anhydr... 105 3e-23
U41539-1|AAB52498.1| 246|Caenorhabditis elegans Carbonic anhydr... 91 7e-19
AF000198-1|AAB53054.1| 319|Caenorhabditis elegans Carbonic anhy... 88 6e-18
Z68118-4|CAD18873.1| 235|Caenorhabditis elegans Hypothetical pr... 85 4e-17
Z68118-3|CAA92190.2| 280|Caenorhabditis elegans Hypothetical pr... 85 4e-17
U12966-4|AAA20616.1| 365|Caenorhabditis elegans Carbonic anhydr... 75 5e-14
U23517-10|AAB93341.3| 337|Caenorhabditis elegans Carbonic anhyd... 64 1e-10
U41746-9|AAA83334.3| 559|Caenorhabditis elegans Groundhog (hedg... 31 0.77
U13644-7|AAM48536.2| 700|Caenorhabditis elegans Hypothetical pr... 31 0.77
U13644-6|AAB52678.1| 739|Caenorhabditis elegans Hypothetical pr... 31 0.77
Z66567-3|CAA91489.1| 444|Caenorhabditis elegans Hypothetical pr... 31 1.0
U80846-3|AAC70890.1| 2232|Caenorhabditis elegans Hypothetical pr... 30 1.8
U41035-2|AAM69088.1| 1371|Caenorhabditis elegans Uncoordinated p... 29 3.1
U41035-1|AAB37028.2| 1563|Caenorhabditis elegans Uncoordinated p... 29 3.1
AF257062-1|AAK49331.1| 1563|Caenorhabditis elegans Rab3-interact... 29 3.1
Z75710-9|CAB00024.2| 752|Caenorhabditis elegans Hypothetical pr... 29 4.1
U80846-5|AAP82647.1| 825|Caenorhabditis elegans Hypothetical pr... 29 4.1
U80846-4|AAC70889.1| 1032|Caenorhabditis elegans Hypothetical pr... 29 4.1
U41994-8|AAK31524.1| 752|Caenorhabditis elegans Hypothetical pr... 28 7.2
Z22175-2|CAA80131.2| 520|Caenorhabditis elegans Hypothetical pr... 28 9.5
Z11115-20|CAA77460.2| 520|Caenorhabditis elegans Hypothetical p... 28 9.5
>U39743-2|AAA80437.6| 310|Caenorhabditis elegans Carbonic anhydrase
protein 5 protein.
Length = 310
Score = 105 bits (253), Expect = 3e-23
Identities = 60/164 (36%), Positives = 87/164 (53%), Gaps = 1/164 (0%)
Frame = -3
Query: 758 HWGDKNNRGSEHTLNDMRLPLEMHIIHRNKKYRNTAEAMQHPDGLCVLAFFYQVVEFD-A 582
HWG + GSEH + + P E+H++H + EA+ PDGL V+ F A
Sbjct: 119 HWGQNDAVGSEHAMGSLHYPAELHLVHVREGL-TLKEALSRPDGLAVVGVFLAKTNDPVA 177
Query: 581 KLLSPIVKNLTAIENFNSTLQLPHTFSLSSILSGLDTERFYTYKGSLTTPPCAEAVTWVI 402
SPI + L + + + +L + F +L LDTE FY Y+GSLTTP C+EAV W +
Sbjct: 178 NKFSPISERLHDLRHSGNKTELKN-FRTKYVLP-LDTEAFYRYEGSLTTPDCSEAVIWTV 235
Query: 401 FSDYLPISVFQMDNFRGLLSNLNLPLVDNFRQLQPLFGRRVFVR 270
++ + IS Q+ R L + + N+R LQPL GRR+ R
Sbjct: 236 LAEPMAISSHQLHLLRQLHNKELVKSDKNYRPLQPLNGRRIQYR 279
>U41539-1|AAB52498.1| 246|Caenorhabditis elegans Carbonic anhydrase
protein 3 protein.
Length = 246
Score = 91.5 bits (217), Expect = 7e-19
Identities = 53/160 (33%), Positives = 88/160 (55%)
Frame = -3
Query: 758 HWGDKNNRGSEHTLNDMRLPLEMHIIHRNKKYRNTAEAMQHPDGLCVLAFFYQVVEFDAK 579
HWG+ +N GSEHTL +R P E+H++H + ++ P L V+ F Q+ + + K
Sbjct: 93 HWGENDNEGSEHTLGGLRYPAELHLVH---------QGVEDPGKLAVVGVFLQLGK-EGK 142
Query: 578 LLSPIVKNLTAIENFNSTLQLPHTFSLSSILSGLDTERFYTYKGSLTTPPCAEAVTWVIF 399
LS + L + N + ++ + LS L + F+ Y+GSLTTPPC+E VTW IF
Sbjct: 143 ALSNEERVLGKLCNPETVTRVENV-RLSEKLPA-NKRSFWRYEGSLTTPPCSEIVTWTIF 200
Query: 398 SDYLPISVFQMDNFRGLLSNLNLPLVDNFRQLQPLFGRRV 279
++ + ++ Q++ FR + P+ N+R Q L R++
Sbjct: 201 TEPVTVTHDQLELFRQVQDIEKRPIKKNYRPTQNLNDRKI 240
>AF000198-1|AAB53054.1| 319|Caenorhabditis elegans Carbonic
anhydrase protein 6 protein.
Length = 319
Score = 88.2 bits (209), Expect = 6e-18
Identities = 45/136 (33%), Positives = 71/136 (52%), Gaps = 1/136 (0%)
Frame = -3
Query: 758 HWGDKNNRGSEHTLNDMRLPLEMHIIHRNKKYRNTAEAMQHPDGLCVLAFFYQVVEFDAK 579
HW + GSEHT+ + EMH+IHRN ++ A+A++ P+G+ +A F D
Sbjct: 137 HWATEPMNGSEHTIGGVGYAGEMHLIHRNTRFATMADALKQPNGVIAIAVFLNESHDDNA 196
Query: 578 LLSPIVKNLTAIENFNSTLQLPHTFSLSSILSGLD-TERFYTYKGSLTTPPCAEAVTWVI 402
+ SP++ L + S +L +F + + T+ F+ Y+GS TT P E V W++
Sbjct: 197 VFSPLINLLPQVIYKGSECKL-CSFDFQTFFPVAEKTKEFWMYEGSETTDPFRETVNWIV 255
Query: 401 FSDYLPISVFQMDNFR 354
LPIS Q+D R
Sbjct: 256 IRAALPISSHQLDKLR 271
>Z68118-4|CAD18873.1| 235|Caenorhabditis elegans Hypothetical
protein R01E6.3b protein.
Length = 235
Score = 85.4 bits (202), Expect = 4e-17
Identities = 44/139 (31%), Positives = 71/139 (51%)
Frame = -3
Query: 761 SHWGDKNNRGSEHTLNDMRLPLEMHIIHRNKKYRNTAEAMQHPDGLCVLAFFYQVVEFDA 582
+HWG + GSEH L+ +L E+H + N Y + A+ PDGL V+ F + +++
Sbjct: 77 AHWGSNSKEGSEHFLDGKQLSGEVHFVFWNTSYESFNVALSKPDGLAVVGVFLKEGKYND 136
Query: 581 KLLSPIVKNLTAIENFNSTLQLPHTFSLSSILSGLDTERFYTYKGSLTTPPCAEAVTWVI 402
I A N + + +P F + +L D F TY GSLTTPP E V W +
Sbjct: 137 NYHGLIDTVRKATGNA-TPIAMPKDFHIEHLLPSPDKREFVTYLGSLTTPPYNECVIWTL 195
Query: 401 FSDYLPISVFQMDNFRGLL 345
F++ + +S Q++ R ++
Sbjct: 196 FTEPVEVSFGQLNVLRNII 214
>Z68118-3|CAA92190.2| 280|Caenorhabditis elegans Hypothetical
protein R01E6.3a protein.
Length = 280
Score = 85.4 bits (202), Expect = 4e-17
Identities = 44/139 (31%), Positives = 71/139 (51%)
Frame = -3
Query: 761 SHWGDKNNRGSEHTLNDMRLPLEMHIIHRNKKYRNTAEAMQHPDGLCVLAFFYQVVEFDA 582
+HWG + GSEH L+ +L E+H + N Y + A+ PDGL V+ F + +++
Sbjct: 122 AHWGSNSKEGSEHFLDGKQLSGEVHFVFWNTSYESFNVALSKPDGLAVVGVFLKEGKYND 181
Query: 581 KLLSPIVKNLTAIENFNSTLQLPHTFSLSSILSGLDTERFYTYKGSLTTPPCAEAVTWVI 402
I A N + + +P F + +L D F TY GSLTTPP E V W +
Sbjct: 182 NYHGLIDTVRKATGNA-TPIAMPKDFHIEHLLPSPDKREFVTYLGSLTTPPYNECVIWTL 240
Query: 401 FSDYLPISVFQMDNFRGLL 345
F++ + +S Q++ R ++
Sbjct: 241 FTEPVEVSFGQLNVLRNII 259
>U12966-4|AAA20616.1| 365|Caenorhabditis elegans Carbonic anhydrase
protein 1 protein.
Length = 365
Score = 75.4 bits (177), Expect = 5e-14
Identities = 50/172 (29%), Positives = 79/172 (45%), Gaps = 5/172 (2%)
Frame = -3
Query: 758 HWGDKNNRGSEHTLNDMRLPLEMHIIHRNKK-YRNTAEAMQHPDGLCVLAFFYQVVEFDA 582
H G KN GSEHT+N R P+E+ ++ N Y N A + P G+ +L+ +V+F
Sbjct: 191 HMGRKNENGSEHTINGRRFPMEVQLVAYNTDLYPNFTSASKSPHGIAILSV---LVDFGP 247
Query: 581 KLLSPIVKNLTAIENFNSTLQLPHTFSLSSILSGLDTERFYTYKGSLTTPPCAEAVTWVI 402
+ ++K A + + Q T TY+GSLT+P C E VTW+I
Sbjct: 248 ETNQELIKLTIATASISYKDQRVQLADFEPWRLLPFTRDIITYEGSLTSPGCHETVTWII 307
Query: 401 FSDYLPISVFQMDNFRGLLSNL----NLPLVDNFRQLQPLFGRRVFVRITSK 258
+ + I + + L ++ +P+ NFR++Q R V I K
Sbjct: 308 LNQPIFIKKEHFEEWSHLYLSMEGAEKVPVAPNFRKIQETNNRLVRTNIQHK 359
>U23517-10|AAB93341.3| 337|Caenorhabditis elegans Carbonic
anhydrase protein 2 protein.
Length = 337
Score = 64.1 bits (149), Expect = 1e-10
Identities = 42/130 (32%), Positives = 67/130 (51%), Gaps = 3/130 (2%)
Frame = -3
Query: 758 HWG--DKNNRGSEHTLNDMRLPLEMHIIHRNKK-YRNTAEAMQHPDGLCVLAFFYQVVEF 588
H+G D+ +GSEHT++ +R P E+ ++ N Y N + AM P GL ++ + +
Sbjct: 106 HFGRADEGEKGSEHTVDRVRFPAEIQLLAYNSALYPNFSVAMTSPRGLLAVSVIVDIGKT 165
Query: 587 DAKLLSPIVKNLTAIENFNSTLQLPHTFSLSSILSGLDTERFYTYKGSLTTPPCAEAVTW 408
+ L + +I T L F S++L T + TY+GSLT P C E VTW
Sbjct: 166 TSVELRRLTVASQSINYKGQTTNLTD-FQPSALLP--KTSHYVTYEGSLTFPGCHETVTW 222
Query: 407 VIFSDYLPIS 378
VI ++ + I+
Sbjct: 223 VILNNPIYIT 232
>U41746-9|AAA83334.3| 559|Caenorhabditis elegans Groundhog
(hedgehog-like family)protein 6 protein.
Length = 559
Score = 31.5 bits (68), Expect = 0.77
Identities = 14/36 (38%), Positives = 22/36 (61%)
Frame = -1
Query: 283 VSSSESHQRTLSSRRPNSTTPNGTGLDTRSPKMTSS 176
V+ + + R ++RRP +TTP T TR PK T++
Sbjct: 347 VTQAPTTPRATTTRRPTTTTPRPTPRRTRRPKTTTA 382
>U13644-7|AAM48536.2| 700|Caenorhabditis elegans Hypothetical
protein F56D2.6b protein.
Length = 700
Score = 31.5 bits (68), Expect = 0.77
Identities = 18/60 (30%), Positives = 30/60 (50%)
Frame = +2
Query: 353 HGNYPFETRKWAGSQKRSPM*RLQHREEWSMILCTCRTFQCPSQTGLTTRRKYXXXXEWS 532
+ N PF R WA +KRS + +++E++ +L R QC + G T K +W+
Sbjct: 57 YNNQPFSNRYWAIWEKRSQLPVWEYKEKFMELL---RNNQCITLVGETGSGKTTQIPQWA 113
>U13644-6|AAB52678.1| 739|Caenorhabditis elegans Hypothetical
protein F56D2.6a protein.
Length = 739
Score = 31.5 bits (68), Expect = 0.77
Identities = 18/60 (30%), Positives = 30/60 (50%)
Frame = +2
Query: 353 HGNYPFETRKWAGSQKRSPM*RLQHREEWSMILCTCRTFQCPSQTGLTTRRKYXXXXEWS 532
+ N PF R WA +KRS + +++E++ +L R QC + G T K +W+
Sbjct: 57 YNNQPFSNRYWAIWEKRSQLPVWEYKEKFMELL---RNNQCITLVGETGSGKTTQIPQWA 113
>Z66567-3|CAA91489.1| 444|Caenorhabditis elegans Hypothetical
protein ZK455.3 protein.
Length = 444
Score = 31.1 bits (67), Expect = 1.0
Identities = 16/42 (38%), Positives = 24/42 (57%)
Frame = +3
Query: 642 HSFRGVSVFLIPMDDVHFQRKTHIVQCVLRSSVVLVTPVGNA 767
H FR + F I D + F+RK I+ + + ++LV VGNA
Sbjct: 21 HLFRKILCFRIYDDTISFERKIGIIIPTIFAVIILVGLVGNA 62
>U80846-3|AAC70890.1| 2232|Caenorhabditis elegans Hypothetical
protein K06A9.1b protein.
Length = 2232
Score = 30.3 bits (65), Expect = 1.8
Identities = 16/50 (32%), Positives = 26/50 (52%)
Frame = -1
Query: 319 ITSGSYNRCLVAVSSSESHQRTLSSRRPNSTTPNGTGLDTRSPKMTSSTS 170
+T GS S + S +S+ PN +T +G+ + T+SP + STS
Sbjct: 828 VTVGSTEASTSGSSVASSSPAPSTSQNPNPSTSSGSSMITQSPYPSQSTS 877
Score = 29.1 bits (62), Expect = 4.1
Identities = 18/40 (45%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
Frame = -1
Query: 283 VSSSESHQRTLSSRRPN--STTPNGTGLDTRSPKMTSSTS 170
V SS S Q + S PN STTP+ T + SP M S+S
Sbjct: 590 VPSSSSPQPSSQSPAPNTGSTTPSQTSSQSPSPSMNPSSS 629
>U41035-2|AAM69088.1| 1371|Caenorhabditis elegans Uncoordinated
protein 10, isoform b protein.
Length = 1371
Score = 29.5 bits (63), Expect = 3.1
Identities = 14/40 (35%), Positives = 23/40 (57%)
Frame = -1
Query: 268 SHQRTLSSRRPNSTTPNGTGLDTRSPKMTSSTSMNKYIYI 149
+ QRT ++R +T G G+ R P + +T MNKY ++
Sbjct: 334 NEQRTDNNRMRENTNGQG-GMFNRQPSLEQTTPMNKYNHV 372
>U41035-1|AAB37028.2| 1563|Caenorhabditis elegans Uncoordinated
protein 10, isoform a protein.
Length = 1563
Score = 29.5 bits (63), Expect = 3.1
Identities = 14/40 (35%), Positives = 23/40 (57%)
Frame = -1
Query: 268 SHQRTLSSRRPNSTTPNGTGLDTRSPKMTSSTSMNKYIYI 149
+ QRT ++R +T G G+ R P + +T MNKY ++
Sbjct: 334 NEQRTDNNRMRENTNGQG-GMFNRQPSLEQTTPMNKYNHV 372
>AF257062-1|AAK49331.1| 1563|Caenorhabditis elegans Rab3-interacting
molecule UNC-10 protein.
Length = 1563
Score = 29.5 bits (63), Expect = 3.1
Identities = 14/40 (35%), Positives = 23/40 (57%)
Frame = -1
Query: 268 SHQRTLSSRRPNSTTPNGTGLDTRSPKMTSSTSMNKYIYI 149
+ QRT ++R +T G G+ R P + +T MNKY ++
Sbjct: 334 NEQRTDNNRMRENTNGQG-GMFNRQPSLEQTTPMNKYNHV 372
>Z75710-9|CAB00024.2| 752|Caenorhabditis elegans Hypothetical
protein D1081.3 protein.
Length = 752
Score = 29.1 bits (62), Expect = 4.1
Identities = 18/53 (33%), Positives = 26/53 (49%)
Frame = -1
Query: 286 AVSSSESHQRTLSSRRPNSTTPNGTGLDTRSPKMTSSTSMNKYIYIYPITTDK 128
A SSS + T NS+ PN ++T K ++TS + YI + PI K
Sbjct: 611 ASSSSNQPEATTQQIVQNSSDPNSPNVNTNPSKNRNTTSNSNYIEL-PIDEGK 662
>U80846-5|AAP82647.1| 825|Caenorhabditis elegans Hypothetical
protein K06A9.1c protein.
Length = 825
Score = 29.1 bits (62), Expect = 4.1
Identities = 18/40 (45%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
Frame = -1
Query: 283 VSSSESHQRTLSSRRPN--STTPNGTGLDTRSPKMTSSTS 170
V SS S Q + S PN STTP+ T + SP M S+S
Sbjct: 383 VPSSSSPQPSSQSPAPNTGSTTPSQTSSQSPSPSMNPSSS 422
>U80846-4|AAC70889.1| 1032|Caenorhabditis elegans Hypothetical
protein K06A9.1a protein.
Length = 1032
Score = 29.1 bits (62), Expect = 4.1
Identities = 18/40 (45%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
Frame = -1
Query: 283 VSSSESHQRTLSSRRPN--STTPNGTGLDTRSPKMTSSTS 170
V SS S Q + S PN STTP+ T + SP M S+S
Sbjct: 590 VPSSSSPQPSSQSPAPNTGSTTPSQTSSQSPSPSMNPSSS 629
>U41994-8|AAK31524.1| 752|Caenorhabditis elegans Hypothetical
protein F59A6.4 protein.
Length = 752
Score = 28.3 bits (60), Expect = 7.2
Identities = 15/43 (34%), Positives = 27/43 (62%), Gaps = 1/43 (2%)
Frame = -1
Query: 286 AVSSSESHQRTLSSRRPNSTTPNGTGLDTRS-PKMTSSTSMNK 161
AV++S++ S R TTPNG T+S K++++++MN+
Sbjct: 24 AVAASKARTPEGSGRGKKPTTPNGVANPTKSKTKVSTASTMNE 66
>Z22175-2|CAA80131.2| 520|Caenorhabditis elegans Hypothetical
protein ZK637.1 protein.
Length = 520
Score = 27.9 bits (59), Expect = 9.5
Identities = 19/71 (26%), Positives = 33/71 (46%)
Frame = -3
Query: 515 PHTFSLSSILSGLDTERFYTYKGSLTTPPCAEAVTWVIFSDYLPISVFQMDNFRGLLSNL 336
P + + GL T G++ TP A+ + S LPI ++ GL+++L
Sbjct: 448 PEVYPTTLRAVGLGTCSAMARIGAIVTPFIAQVASEKSLS--LPIGIYGTAAILGLIASL 505
Query: 335 NLPLVDNFRQL 303
+LP+ RQ+
Sbjct: 506 SLPIETKGRQM 516
>Z11115-20|CAA77460.2| 520|Caenorhabditis elegans Hypothetical
protein ZK637.1 protein.
Length = 520
Score = 27.9 bits (59), Expect = 9.5
Identities = 19/71 (26%), Positives = 33/71 (46%)
Frame = -3
Query: 515 PHTFSLSSILSGLDTERFYTYKGSLTTPPCAEAVTWVIFSDYLPISVFQMDNFRGLLSNL 336
P + + GL T G++ TP A+ + S LPI ++ GL+++L
Sbjct: 448 PEVYPTTLRAVGLGTCSAMARIGAIVTPFIAQVASEKSLS--LPIGIYGTAAILGLIASL 505
Query: 335 NLPLVDNFRQL 303
+LP+ RQ+
Sbjct: 506 SLPIETKGRQM 516
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,498,240
Number of Sequences: 27780
Number of extensions: 467472
Number of successful extensions: 1383
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 1284
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1370
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2066533546
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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