Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte16e10
         (822 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4D7.13 |usp104|prp40|U1 snRNP-associated protein Usp104|Schi...    29   1.1  
SPBC336.03 |efc25||exchange factor Cdc25p-like|Schizosaccharomyc...    27   3.2  
SPBC1703.02 |rsc9||RSC complex subunit Rsc9|Schizosaccharomyces ...    27   4.3  
SPAPB1A10.05 |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    27   4.3  
SPAC29E6.07 ||SPAC30.11|sequence orphan|Schizosaccharomyces pomb...    26   5.6  
SPAC637.09 |||ribonuclease H70 |Schizosaccharomyces pombe|chr 1|...    26   7.4  
SPBC3B8.04c |||membrane transporter|Schizosaccharomyces pombe|ch...    25   9.8  

>SPAC4D7.13 |usp104|prp40|U1 snRNP-associated protein
           Usp104|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 695

 Score = 28.7 bits (61), Expect = 1.1
 Identities = 16/42 (38%), Positives = 20/42 (47%), Gaps = 6/42 (14%)
 Frame = +3

Query: 363 AVFRHLDRSGLNHSWIT*QTVGRACR------LQCPWARACA 470
           A F+ LD   +N SW   QTV   C       ++ PW R CA
Sbjct: 197 AFFKFLDSHNVNPSWTWEQTVRELCDAKGYYVMKDPWHRKCA 238


>SPBC336.03 |efc25||exchange factor Cdc25p-like|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 987

 Score = 27.1 bits (57), Expect = 3.2
 Identities = 19/59 (32%), Positives = 28/59 (47%), Gaps = 1/59 (1%)
 Frame = -1

Query: 276 PSSSATSLQDFILPNMGLQDITIQLQNVT-EPNPRNPPMSV*NVAKLK*NTRLKPQIRF 103
           PSS  +S   F        D      ++T +P+PR+P      +  LK NTR  P+IR+
Sbjct: 79  PSSDKSSTSPFPYLKGSFDDRFSSTHSLTRQPSPRSP------LTPLKGNTRASPEIRY 131


>SPBC1703.02 |rsc9||RSC complex subunit Rsc9|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 780

 Score = 26.6 bits (56), Expect = 4.3
 Identities = 17/47 (36%), Positives = 26/47 (55%), Gaps = 5/47 (10%)
 Frame = -1

Query: 681 WIFSDQ--RKMCIE-MDRFVTVL--NAGENNIVRQSTESSITIPFEQ 556
           W+  DQ  R M  +  +RF+TV   N+  N  V+    SSI++P E+
Sbjct: 471 WMLVDQLIRLMMYQAQERFMTVTIENSESNPAVKHEATSSISLPMEE 517


>SPAPB1A10.05 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 285

 Score = 26.6 bits (56), Expect = 4.3
 Identities = 17/69 (24%), Positives = 30/69 (43%), Gaps = 5/69 (7%)
 Frame = +1

Query: 631 DESVHFNTHLALVREYPGDIALVELRSDED-----THCGATAATGVVHVYSVAEMPVVEV 795
           +E VH+NT+  +V E    + + EL  D D      +   T  T   H   ++ +P  + 
Sbjct: 212 EEPVHYNTYDGVVNEPNSSVIIEELDDDYDELNDPMNNNDTPITNSTHSAQMSNLPTHDS 271

Query: 796 SEASVHGPV 822
            +  + G V
Sbjct: 272 MDIDMGGAV 280


>SPAC29E6.07 ||SPAC30.11|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 116

 Score = 26.2 bits (55), Expect = 5.6
 Identities = 13/42 (30%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
 Frame = +2

Query: 611 SPAF-RTVTNLSISIHILRWSENIQGTLRSSNFGVMKIRTVV 733
           SP F +T T  +  IHI ++SE +   L   +   + +RT++
Sbjct: 56  SPLFIKTTTRPTALIHITKYSEALASRLLKGHMTQLSLRTIL 97


>SPAC637.09 |||ribonuclease H70 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 623

 Score = 25.8 bits (54), Expect = 7.4
 Identities = 15/49 (30%), Positives = 24/49 (48%)
 Frame = -1

Query: 327 KDKKYPDRRAMGFPFDRPSSSATSLQDFILPNMGLQDITIQLQNVTEPN 181
           K K+  + RAM   F +PS    S + FI     L    ++ + VT+P+
Sbjct: 203 KKKRDKETRAMA-SFSKPSDYLMSYESFIEDEYPLHPTVMKGEEVTQPS 250


>SPBC3B8.04c |||membrane transporter|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 867

 Score = 25.4 bits (53), Expect = 9.8
 Identities = 10/27 (37%), Positives = 14/27 (51%)
 Frame = +1

Query: 622 QDSDESVHFNTHLALVREYPGDIALVE 702
           +D DE  + N    L+ +YP DI   E
Sbjct: 217 EDEDEDNNNNNRWLLIEQYPSDIVAYE 243


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,506,650
Number of Sequences: 5004
Number of extensions: 75512
Number of successful extensions: 192
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 190
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 192
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 402440190
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)