Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte16e10
         (822 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z93395-2|CAB07705.1|  905|Caenorhabditis elegans Hypothetical pr...    31   1.00 
Z83112-5|CAB05541.1|  905|Caenorhabditis elegans Hypothetical pr...    31   1.00 
AL132898-4|CAC14407.3|  968|Caenorhabditis elegans Hypothetical ...    30   2.3  
AF125451-5|AAD12824.1| 1086|Caenorhabditis elegans Taf (tbp-asso...    29   3.0  
U22184-1|AAA64847.1|  348|Caenorhabditis elegans Wnt protein pro...    29   4.0  
U22179-1|AAA64846.1|  348|Caenorhabditis elegans Wnt protein pro...    29   4.0  
AC006627-1|AAK85460.1|  348|Caenorhabditis elegans Abnormal cell...    29   4.0  
AC025716-15|AAO21409.1|  521|Caenorhabditis elegans Udp-glucuron...    29   5.3  
U40029-11|AAA81130.1|  914|Caenorhabditis elegans Tudor staphylo...    28   7.0  
U58751-5|AAN84882.1|  781|Caenorhabditis elegans Wasp (actin cyt...    28   9.3  
U53150-2|AAV28350.1|  580|Caenorhabditis elegans Hypothetical pr...    28   9.3  
AF067215-5|AAC17010.3|  441|Caenorhabditis elegans T box family ...    28   9.3  

>Z93395-2|CAB07705.1|  905|Caenorhabditis elegans Hypothetical
           protein ZC101.1 protein.
          Length = 905

 Score = 31.1 bits (67), Expect = 1.00
 Identities = 23/67 (34%), Positives = 32/67 (47%)
 Frame = -3

Query: 808 RSLHSPQLQAFQLQNKREQHR*QPSHHSAYLHHSEVRRAQCPLDILGPTQDVY*NGQIRH 629
           R  H  Q Q  Q Q++++Q +    HH A  HHS+    Q P     P+QD +   + R 
Sbjct: 663 RQQHERQQQERQQQDRQQQAQ---QHHQAQQHHSQ----QHPAQPAQPSQDHHEEHRRRL 715

Query: 628 CPERRRE 608
              RRRE
Sbjct: 716 EEHRRRE 722


>Z83112-5|CAB05541.1|  905|Caenorhabditis elegans Hypothetical
           protein ZC101.1 protein.
          Length = 905

 Score = 31.1 bits (67), Expect = 1.00
 Identities = 23/67 (34%), Positives = 32/67 (47%)
 Frame = -3

Query: 808 RSLHSPQLQAFQLQNKREQHR*QPSHHSAYLHHSEVRRAQCPLDILGPTQDVY*NGQIRH 629
           R  H  Q Q  Q Q++++Q +    HH A  HHS+    Q P     P+QD +   + R 
Sbjct: 663 RQQHERQQQERQQQDRQQQAQ---QHHQAQQHHSQ----QHPAQPAQPSQDHHEEHRRRL 715

Query: 628 CPERRRE 608
              RRRE
Sbjct: 716 EEHRRRE 722


>AL132898-4|CAC14407.3|  968|Caenorhabditis elegans Hypothetical
           protein Y59A8B.6 protein.
          Length = 968

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 19/42 (45%), Positives = 25/42 (59%), Gaps = 5/42 (11%)
 Frame = -1

Query: 276 PSSSATSLQDFILPNMG--LQDIT---IQLQNVTEPNPRNPP 166
           P    T +Q  I+P MG  LQDI    + L++V E NPR+PP
Sbjct: 296 PKGYLTDMQS-IIPQMGGDLQDIKKARMLLKSVRETNPRHPP 336


>AF125451-5|AAD12824.1| 1086|Caenorhabditis elegans Taf
           (tbp-associated transcriptionfactor) family protein 2
           protein.
          Length = 1086

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 16/50 (32%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
 Frame = -2

Query: 248 TSFYQTWACRTSLFNCKTSPNLTHGTLPCLFKMSQN-*NEIRVLNHKFDF 102
           T+ Y     R +L+N   S    H  LPC  ++ +N  N++RVL  +F +
Sbjct: 827 TNRYSDDFYRAALYNSLASSVFPHDALPCHVELPENLSNDVRVLIKEFTY 876


>U22184-1|AAA64847.1|  348|Caenorhabditis elegans Wnt protein
           protein.
          Length = 348

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 15/34 (44%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
 Frame = -2

Query: 515 ATNSLPSITAAAAG-LSTCSCPRALKPACPSNCL 417
           ATN +P+I+ A AG +     P  LK  CPS+ L
Sbjct: 25  ATNEIPTISGAPAGKIVQPPKPNILKQGCPSDLL 58


>U22179-1|AAA64846.1|  348|Caenorhabditis elegans Wnt protein
           protein.
          Length = 348

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 15/34 (44%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
 Frame = -2

Query: 515 ATNSLPSITAAAAG-LSTCSCPRALKPACPSNCL 417
           ATN +P+I+ A AG +     P  LK  CPS+ L
Sbjct: 25  ATNEIPTISGAPAGKIVQPPKPNILKQGCPSDLL 58


>AC006627-1|AAK85460.1|  348|Caenorhabditis elegans Abnormal cell
           lineage protein 44,isoform a protein.
          Length = 348

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 15/34 (44%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
 Frame = -2

Query: 515 ATNSLPSITAAAAG-LSTCSCPRALKPACPSNCL 417
           ATN +P+I+ A AG +     P  LK  CPS+ L
Sbjct: 25  ATNEIPTISGAPAGKIVQPPKPNILKQGCPSDLL 58


>AC025716-15|AAO21409.1|  521|Caenorhabditis elegans
           Udp-glucuronosyltransferase protein31 protein.
          Length = 521

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 28/83 (33%), Positives = 40/83 (48%), Gaps = 2/83 (2%)
 Frame = -2

Query: 410 YPTMI*TGSIKMTENSSLVWKRRASVD*RIRNIL-IGALWDSRSIDPRAAPPASRTSFYQ 234
           Y  +I  GS  M ++S++  K R S+   IRN   +  +W   S D R A       F +
Sbjct: 298 YNMLISFGS--MVKSSTMPEKWRNSILSAIRNFPNVTFIWKYESDDLRWAENVENVHFLK 355

Query: 233 TWACRTSLFNC-KTSPNLTHGTL 168
            W  +T+L N  + S  LTHG L
Sbjct: 356 -WIPQTALLNNPRVSAFLTHGGL 377


>U40029-11|AAA81130.1|  914|Caenorhabditis elegans Tudor
           staphylococcal nuclease homologprotein 1 protein.
          Length = 914

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 13/31 (41%), Positives = 21/31 (67%)
 Frame = -1

Query: 261 TSLQDFILPNMGLQDITIQLQNVTEPNPRNP 169
           ++++ F+LPN   + IT+QL  V  P+ RNP
Sbjct: 206 STVRAFLLPNF--EYITLQLSGVRAPSTRNP 234


>U58751-5|AAN84882.1|  781|Caenorhabditis elegans Wasp (actin
           cytoskeleton modulator)homolog protein 1, isoform b
           protein.
          Length = 781

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 14/36 (38%), Positives = 21/36 (58%)
 Frame = -3

Query: 790 QLQAFQLQNKREQHR*QPSHHSAYLHHSEVRRAQCP 683
           QLQ    Q +++Q   +P H S++ HH E RR + P
Sbjct: 184 QLQQQHHQQQQQQLAFRPRHRSSH-HHQEPRRHRAP 218


>U53150-2|AAV28350.1|  580|Caenorhabditis elegans Hypothetical
           protein F20A1.4 protein.
          Length = 580

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 20/69 (28%), Positives = 33/69 (47%), Gaps = 1/69 (1%)
 Frame = -2

Query: 659 RCVLKWTDSSLS*TPERIILSVSRRSLP*LFRSNRHSATYPLRAMI-HDATNSLPSITAA 483
           RC  K+     S T  R++L+   +SLP L  ++  ++  PL ++I   A   +PS+T  
Sbjct: 131 RCWDKYRRGPCSSTIVRLLLATVDKSLPMLLTTSTCASIIPLVSIIVSPAKTIIPSVTLC 190

Query: 482 AAGLSTCSC 456
              L    C
Sbjct: 191 VLNLLQNIC 199


>AF067215-5|AAC17010.3|  441|Caenorhabditis elegans T box family
           protein 32 protein.
          Length = 441

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 12/37 (32%), Positives = 19/37 (51%)
 Frame = +2

Query: 608 FSPAFRTVTNLSISIHILRWSENIQGTLRSSNFGVMK 718
           + P  R  T+  IS+ +  WS+    T+ SSN  V +
Sbjct: 144 YVPVLRFTTSSGISLEVTVWSQKFVTTMTSSNRSVKR 180


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,743,982
Number of Sequences: 27780
Number of extensions: 444912
Number of successful extensions: 1178
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1112
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1177
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2029935014
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)