Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte16e09
(416 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1A4.05 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 27 0.88
SPAPB17E12.10c |||SAM-dependent methyltransferase|Schizosaccharo... 26 2.0
SPBC1604.10 |srb7|med21|mediator complex subunit Srb7 |Schizosac... 25 4.7
SPAC1B3.16c |vht1||vitamin H transporter Vth1|Schizosaccharomyce... 25 4.7
SPBC354.15 |fap1||L-pipecolate oxidase|Schizosaccharomyces pombe... 25 4.7
SPAC6F12.16c |mtr4||ATP-dependent RNA helicase, TRAMP complex su... 25 6.2
SPCC550.03c |||RNA helicase involved in mRNA catabolism|Schizosa... 24 8.2
SPAC17G8.10c |dma1||mitotic spindle checkpoint protein Dma1|Schi... 24 8.2
SPBC12C2.03c |||FAD binding protein |Schizosaccharomyces pombe|c... 24 8.2
SPAC589.12 ||SPAC688.01|glycosylceramide biosynthesis protein |S... 24 8.2
>SPBC1A4.05 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 700
Score = 27.5 bits (58), Expect = 0.88
Identities = 12/35 (34%), Positives = 20/35 (57%)
Frame = -1
Query: 317 YWPEIIGVTFGIGTGMFLNFQTKRPVFSGIQKHII 213
+W EI +G + NFQ K+ + SG+Q ++I
Sbjct: 229 HWIEINAGFKEVGDELSENFQRKQEILSGLQNNVI 263
>SPAPB17E12.10c |||SAM-dependent
methyltransferase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 301
Score = 26.2 bits (55), Expect = 2.0
Identities = 11/27 (40%), Positives = 17/27 (62%)
Frame = -1
Query: 200 WVSILSYVQHKRNEYLAEKDAVYRHYI 120
W+S L Y+ + NE+LA KD + Y+
Sbjct: 200 WISKLPYLAMQTNEHLAVKDELDSLYL 226
>SPBC1604.10 |srb7|med21|mediator complex subunit Srb7
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 138
Score = 25.0 bits (52), Expect = 4.7
Identities = 8/20 (40%), Positives = 13/20 (65%)
Frame = -1
Query: 128 HYIELHPDDFPVPERKKIGD 69
HY+ H D P+P ++K+ D
Sbjct: 24 HYLSSHHDFVPLPGQEKVSD 43
>SPAC1B3.16c |vht1||vitamin H transporter Vth1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 568
Score = 25.0 bits (52), Expect = 4.7
Identities = 19/59 (32%), Positives = 29/59 (49%)
Frame = -1
Query: 368 ELLKLGDEGRQKPFLNKYWPEIIGVTFGIGTGMFLNFQTKRPVFSGIQKHIIATGGWVS 192
+LLK + R PF+ Y+ I+GV GI L + P FSGI ++ W++
Sbjct: 335 DLLKSCLDLRVWPFILMYFG-IVGVGNGIFNYCTLIIEEINPSFSGIDISLLNAPIWLA 392
>SPBC354.15 |fap1||L-pipecolate oxidase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 412
Score = 25.0 bits (52), Expect = 4.7
Identities = 16/43 (37%), Positives = 23/43 (53%)
Frame = -1
Query: 227 QKHIIATGGWVSILSYVQHKRNEYLAEKDAVYRHYIELHPDDF 99
+K I ATG W + L H R +LA V YI+L P+++
Sbjct: 199 EKLIFATGAWTASLLPNDHTR--FLATGQPV--AYIKLTPEEY 237
>SPAC6F12.16c |mtr4||ATP-dependent RNA helicase, TRAMP complex
subunit Mtr4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1117
Score = 24.6 bits (51), Expect = 6.2
Identities = 15/40 (37%), Positives = 20/40 (50%)
Frame = -1
Query: 293 TFGIGTGMFLNFQTKRPVFSGIQKHIIATGGWVSILSYVQ 174
TF IG LN K VF+ ++K T W+S Y+Q
Sbjct: 552 TFSIG----LNMPAKTVVFTNVRKFDGKTFRWISGGEYIQ 587
>SPCC550.03c |||RNA helicase involved in mRNA
catabolism|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1213
Score = 24.2 bits (50), Expect = 8.2
Identities = 13/30 (43%), Positives = 16/30 (53%), Gaps = 1/30 (3%)
Frame = -1
Query: 305 IIGVTFGIGT-GMFLNFQTKRPVFSGIQKH 219
++ V F T M +N K VFSG QKH
Sbjct: 639 LVKVLFATETFAMGVNMPAKSVVFSGTQKH 668
>SPAC17G8.10c |dma1||mitotic spindle checkpoint protein
Dma1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 267
Score = 24.2 bits (50), Expect = 8.2
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = -3
Query: 291 VRYWHRNVSKLPD*TASVQRYPKTYN 214
VRYW+R + LP + RY + YN
Sbjct: 48 VRYWNRKQNNLP---IYIGRYTERYN 70
>SPBC12C2.03c |||FAD binding protein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 571
Score = 24.2 bits (50), Expect = 8.2
Identities = 10/26 (38%), Positives = 18/26 (69%)
Frame = +2
Query: 68 SHQSSYVREQGNHLGVILYNACILHP 145
SHQ +YV+++ H G I+++ + HP
Sbjct: 491 SHQHAYVQDEIRHRGDIVWSV-LSHP 515
>SPAC589.12 ||SPAC688.01|glycosylceramide biosynthesis protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 971
Score = 24.2 bits (50), Expect = 8.2
Identities = 12/22 (54%), Positives = 14/22 (63%), Gaps = 3/22 (13%)
Frame = +2
Query: 104 HLGVILYNACI---LHPFLLNI 160
H+G+ Y ACI L PFLL I
Sbjct: 310 HMGISGYEACILFELSPFLLGI 331
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,782,196
Number of Sequences: 5004
Number of extensions: 36095
Number of successful extensions: 92
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 91
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 92
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 146319408
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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