Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte16e09
         (416 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024859-19|AAK29975.1|  139|Caenorhabditis elegans Hypothetical...    37   0.007
AL132862-33|CAB70222.3|  308|Caenorhabditis elegans Hypothetical...    30   0.59 
AF047657-1|AAK18951.1|  328|Caenorhabditis elegans Serpentine re...    29   1.0  
AC024785-5|AAF60596.1|  577|Caenorhabditis elegans C-type lectin...    29   1.0  
AC024799-1|AAK72316.1|  349|Caenorhabditis elegans Serpentine re...    28   3.1  
U53151-5|AAB37068.1|  476|Caenorhabditis elegans Hypothetical pr...    27   7.2  
U29382-1|AAG00006.1|  382|Caenorhabditis elegans Hypothetical pr...    27   7.2  
AF106577-13|AAC78186.1|  465|Caenorhabditis elegans Hypothetical...    27   7.2  
Z81094-5|CAB03149.2|  675|Caenorhabditis elegans Hypothetical pr...    26   9.5  
AL021447-5|CAA16268.4|  312|Caenorhabditis elegans Hypothetical ...    26   9.5  
AF536544-1|AAN77185.1|  675|Caenorhabditis elegans SR-related CT...    26   9.5  
AF016685-2|AAG24148.1|  404|Caenorhabditis elegans Hypothetical ...    26   9.5  

>AC024859-19|AAK29975.1|  139|Caenorhabditis elegans Hypothetical
           protein Y71H2AM.4 protein.
          Length = 139

 Score = 36.7 bits (81), Expect = 0.007
 Identities = 21/77 (27%), Positives = 34/77 (44%), Gaps = 3/77 (3%)
 Frame = -1

Query: 263 NFQTKRPVFSGIQKHIIATGGWVSILSYVQHKRNEYLAEKDAVYRHYIELHPDDFP-VPE 87
           N   K+P +  I   ++  G   +        R  +   +DAV  HY++LHP+DF    +
Sbjct: 56  NRWNKKPYYYAIVPRLLLIGAATAAGYAAGALRERHYQTRDAVIEHYMKLHPEDFDHFND 115

Query: 86  R--KKIGDLFEPWIPVR 42
           R  +    +  PW P R
Sbjct: 116 RSGRSFSQVLLPWYPRR 132


>AL132862-33|CAB70222.3|  308|Caenorhabditis elegans Hypothetical
           protein Y73F8A.3 protein.
          Length = 308

 Score = 30.3 bits (65), Expect = 0.59
 Identities = 13/40 (32%), Positives = 21/40 (52%)
 Frame = +3

Query: 108 WV*FYIMPVYCILFC*IFIPFMLYIT*NADPTSSCNYMFL 227
           W+  Y+   +C+L   +  PF +Y+    DPT   NY +L
Sbjct: 5   WIYQYLPATFCVLAF-LVNPFFIYLIFTEDPTKFGNYRYL 43


>AF047657-1|AAK18951.1|  328|Caenorhabditis elegans Serpentine
           receptor, class j protein54 protein.
          Length = 328

 Score = 29.5 bits (63), Expect = 1.0
 Identities = 14/40 (35%), Positives = 21/40 (52%)
 Frame = +3

Query: 108 WV*FYIMPVYCILFC*IFIPFMLYIT*NADPTSSCNYMFL 227
           WV  YI  ++C+L   +  P  +Y+    +PT   NY FL
Sbjct: 5   WVFLYIPLIFCVLSF-LVNPVFIYLIFTENPTKFGNYRFL 43


>AC024785-5|AAF60596.1|  577|Caenorhabditis elegans C-type lectin
           protein 73 protein.
          Length = 577

 Score = 29.5 bits (63), Expect = 1.0
 Identities = 22/77 (28%), Positives = 35/77 (45%), Gaps = 1/77 (1%)
 Frame = -1

Query: 314 WPEIIGVTFGI-GTGMFLNFQTKRPVFSGIQKHIIATGGWVSILSYVQHKRNEYLAEKDA 138
           W E +  T  + G  + L+F    P FS  Q  +I   G V + +  Q+K     AE + 
Sbjct: 180 WDEYVIKTDKVDGDNLALSFYDVHPDFSVPQNAMIKINGKVELQALCQYKPAITPAEINY 239

Query: 137 VYRHYIELHPDDFPVPE 87
           + R Y E++    PV +
Sbjct: 240 MGRRYSEIYYPTVPVKD 256


>AC024799-1|AAK72316.1|  349|Caenorhabditis elegans Serpentine
           receptor, class x protein4 protein.
          Length = 349

 Score = 27.9 bits (59), Expect = 3.1
 Identities = 10/28 (35%), Positives = 19/28 (67%)
 Frame = +1

Query: 319 LFRKGFCRPSSPNFRSSWADICSDIFEI 402
           +FR  FC+  +P +  S+ +I SD+F++
Sbjct: 31  VFRLAFCKRKNPVYIVSFFNILSDVFQV 58


>U53151-5|AAB37068.1|  476|Caenorhabditis elegans Hypothetical
           protein T05B11.4 protein.
          Length = 476

 Score = 26.6 bits (56), Expect = 7.2
 Identities = 13/36 (36%), Positives = 21/36 (58%)
 Frame = -1

Query: 257 QTKRPVFSGIQKHIIATGGWVSILSYVQHKRNEYLA 150
           +TK  +F+ + + I  T    +IL YVQ  +NE +A
Sbjct: 298 ETKWTIFADLDERIYMTNYTGTILDYVQVVKNESIA 333


>U29382-1|AAG00006.1|  382|Caenorhabditis elegans Hypothetical
           protein R03H10.2 protein.
          Length = 382

 Score = 26.6 bits (56), Expect = 7.2
 Identities = 17/41 (41%), Positives = 21/41 (51%)
 Frame = -1

Query: 380 MSAQELLKLGDEGRQKPFLNKYWPEIIGVTFGIGTGMFLNF 258
           +S +EL  LG+E   K FL  Y    +GV F I    FL F
Sbjct: 99  LSEKELEVLGNERTYKWFLRGYLLSELGVFFFIFLASFLYF 139


>AF106577-13|AAC78186.1|  465|Caenorhabditis elegans Hypothetical
           protein F46F5.7 protein.
          Length = 465

 Score = 26.6 bits (56), Expect = 7.2
 Identities = 20/72 (27%), Positives = 36/72 (50%)
 Frame = -1

Query: 257 QTKRPVFSGIQKHIIATGGWVSILSYVQHKRNEYLAEKDAVYRHYIELHPDDFPVPERKK 78
           +TK  +F+ + + I  T    +IL YV+  +NE +A     +R    +  +  P P+ + 
Sbjct: 287 ETKWTIFADLDERIYMTNYTGTILDYVRDIKNESIA--SIQFRQQWIMKTELTP-PKYEG 343

Query: 77  IGDLFEPWIPVR 42
            G L + W+P R
Sbjct: 344 DGQL-DKWMPTR 354


>Z81094-5|CAB03149.2|  675|Caenorhabditis elegans Hypothetical
           protein F58G11.5 protein.
          Length = 675

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = -1

Query: 110 PDDFPVPERKKIGDLFEP 57
           P DFP PER+ I  L +P
Sbjct: 27  PRDFPPPERQSIPSLMDP 44


>AL021447-5|CAA16268.4|  312|Caenorhabditis elegans Hypothetical
           protein F19B2.3 protein.
          Length = 312

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 15/44 (34%), Positives = 23/44 (52%)
 Frame = +3

Query: 45  NWDPRFKQVTNLLTFGNREIIWV*FYIMPVYCILFC*IFIPFML 176
           N+  +   V   +TFG  E  W+ +YI   Y ++F   FIP +L
Sbjct: 205 NYTEKMYTVETSITFGIDEFYWIVYYI---YAVIF--QFIPSIL 243


>AF536544-1|AAN77185.1|  675|Caenorhabditis elegans SR-related CTD
           associated factor 6 protein.
          Length = 675

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = -1

Query: 110 PDDFPVPERKKIGDLFEP 57
           P DFP PER+ I  L +P
Sbjct: 27  PRDFPPPERQSIPSLMDP 44


>AF016685-2|AAG24148.1|  404|Caenorhabditis elegans Hypothetical
           protein F59E11.10 protein.
          Length = 404

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = +2

Query: 74  QSSYVREQGNHLGVILYNAC 133
           Q  Y+R  GNH GV+   AC
Sbjct: 22  QVCYLRAHGNHYGVVSCRAC 41


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,757,601
Number of Sequences: 27780
Number of extensions: 200001
Number of successful extensions: 507
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 502
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 506
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 683806592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)