Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte16e09
         (416 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chlor...    22   2.4  
DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GP...    22   2.4  
DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    21   7.4  
EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.      20   9.7  
DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase ...    20   9.7  
DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase ...    20   9.7  

>DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 383

 Score = 22.2 bits (45), Expect = 2.4
 Identities = 10/40 (25%), Positives = 17/40 (42%)
 Frame = -1

Query: 182 YVQHKRNEYLAEKDAVYRHYIELHPDDFPVPERKKIGDLF 63
           Y +H+  ++L +   VY H   L  D         + D+F
Sbjct: 17  YDKHRAPKFLGQPTIVYFHVTVLSIDSINEESMTYVADIF 56


>DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GPCR
           protein.
          Length = 381

 Score = 22.2 bits (45), Expect = 2.4
 Identities = 8/27 (29%), Positives = 15/27 (55%)
 Frame = +1

Query: 184 LKMLTQPPVAIICFWIPLNTGRLVWKF 264
           +KML+   +     W P +T RL++ +
Sbjct: 269 IKMLSAVVILFFICWAPFHTQRLLYVY 295


>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 20.6 bits (41), Expect = 7.4
 Identities = 7/32 (21%), Positives = 17/32 (53%)
 Frame = -1

Query: 179 VQHKRNEYLAEKDAVYRHYIELHPDDFPVPER 84
           + H   + + +  A+Y+ + E+  + FP  E+
Sbjct: 126 ILHHTGKVVWKPPAIYKSFCEIDVEYFPFDEQ 157


>EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.
          Length = 684

 Score = 20.2 bits (40), Expect = 9.7
 Identities = 10/34 (29%), Positives = 18/34 (52%)
 Frame = -1

Query: 410 RLPISKMSLHMSAQELLKLGDEGRQKPFLNKYWP 309
           +L +++  L   + +L  L +   QKPF   Y+P
Sbjct: 264 KLLLNRYYLERLSNDLPHLEEFDWQKPFYPGYYP 297


>DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase
           isoform B protein.
          Length = 931

 Score = 20.2 bits (40), Expect = 9.7
 Identities = 7/13 (53%), Positives = 8/13 (61%)
 Frame = -1

Query: 188 LSYVQHKRNEYLA 150
           + Y QHK NE  A
Sbjct: 330 IQYAQHKENELYA 342


>DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase
           isoform A protein.
          Length = 969

 Score = 20.2 bits (40), Expect = 9.7
 Identities = 7/13 (53%), Positives = 8/13 (61%)
 Frame = -1

Query: 188 LSYVQHKRNEYLA 150
           + Y QHK NE  A
Sbjct: 368 IQYAQHKENELYA 380


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 121,846
Number of Sequences: 438
Number of extensions: 2927
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10626762
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)