Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte16e07
         (879 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_06_0164 + 11364436-11367280,11367357-11367715                       29   4.9  
03_05_0644 + 26376544-26376929,26377013-26377193,26377314-26379017     28   8.6  

>10_06_0164 + 11364436-11367280,11367357-11367715
          Length = 1067

 Score = 29.1 bits (62), Expect = 4.9
 Identities = 13/43 (30%), Positives = 24/43 (55%)
 Frame = -1

Query: 819 SIMRLHLDQPIMNGLCTLQ*TPNKIMVLFKMSYRSFIGSL*KD 691
           S+M LHLD    NG   +  +  + +VL  ++  S +G++ +D
Sbjct: 562 SLMELHLDDNFFNGTIPVSVSKMRGLVLLNLTKNSLLGAIPQD 604


>03_05_0644 + 26376544-26376929,26377013-26377193,26377314-26379017
          Length = 756

 Score = 28.3 bits (60), Expect = 8.6
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = -3

Query: 469 YLLDFNLHFNVPLFGQETFYYWAYP 395
           Y+  F  HFN  +FG E  +YW  P
Sbjct: 431 YVDFFTKHFNWAVFGNELKWYWTEP 455


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,754,355
Number of Sequences: 37544
Number of extensions: 274309
Number of successful extensions: 404
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 399
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 404
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2479731924
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)