Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte16e04
(781 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_02_0061 + 7904260-7904824,7904935-7905470,7906184-7906861 31 0.78
03_01_0251 - 1956985-1957058,1957238-1957361,1957646-1957744,195... 31 1.4
12_02_0588 - 20842209-20842337,20842464-20842560,20842620-208427... 30 1.8
03_06_0769 + 36134298-36134356,36134740-36134919,36134975-361350... 30 1.8
10_08_0070 + 14637290-14637766,14639215-14639261,14640043-146401... 30 2.4
10_08_0492 + 18292208-18292248,18292874-18293365,18294139-182943... 29 3.1
01_07_0068 - 40861266-40861381,40861469-40861718,40861813-408619... 29 3.1
09_03_0051 + 11902322-11903125 29 4.1
07_03_1107 - 24024387-24024497,24025799-24026410 29 4.1
03_01_0095 + 759530-760123 29 4.1
12_02_1162 + 26612571-26613986,26614095-26614142 28 7.2
11_06_0586 + 25253863-25254285 28 7.2
04_01_0253 - 3358090-3359052 28 7.2
02_01_0615 - 4604373-4604537,4604618-4604707,4604871-4604989,460... 28 7.2
10_08_0521 + 18500105-18500529,18501216-18501284,18501467-185015... 28 9.6
09_03_0150 - 12781628-12781636,12782491-12782571,12783227-127833... 28 9.6
08_02_0013 - 11251368-11252867 28 9.6
08_01_0621 - 5426210-5427787 28 9.6
07_03_1792 + 29569623-29569737,29569848-29569981,29570117-295702... 28 9.6
02_04_0424 - 22781255-22781278,22785248-22785796 28 9.6
>11_02_0061 + 7904260-7904824,7904935-7905470,7906184-7906861
Length = 592
Score = 31.5 bits (68), Expect = 0.78
Identities = 18/40 (45%), Positives = 20/40 (50%)
Frame = +1
Query: 604 AALGSVRARPWGASSRARRKPGAEAPGGRGHESVPRDPVD 723
A LG + P A S RK A A GRG +SVP P D
Sbjct: 457 ARLGYEKLPPSSALSTPLRKAAATAGSGRGKQSVPSVPPD 496
>03_01_0251 -
1956985-1957058,1957238-1957361,1957646-1957744,
1957821-1957919,1958097-1958195,1958306-1958404,
1958744-1958820,1959232-1959952
Length = 463
Score = 30.7 bits (66), Expect = 1.4
Identities = 14/22 (63%), Positives = 15/22 (68%)
Frame = +1
Query: 643 SSRARRKPGAEAPGGRGHESVP 708
+SR RRKP AEA GG G VP
Sbjct: 93 TSRPRRKPAAEAGGGGGSSLVP 114
>12_02_0588 -
20842209-20842337,20842464-20842560,20842620-20842733,
20843140-20843749,20844739-20845462,20845542-20845620,
20845783-20845865,20846148-20846226,20846332-20846420,
20846499-20846591,20847288-20847337,20847417-20847600,
20849227-20849542,20849626-20849657
Length = 892
Score = 30.3 bits (65), Expect = 1.8
Identities = 21/61 (34%), Positives = 24/61 (39%), Gaps = 1/61 (1%)
Frame = +1
Query: 544 CEAXSSAHGVGRSAGVLHRGAALGSVRARPW-GASSRARRKPGAEAPGGRGHESVPRDPV 720
CE A G GR G+ AAL A PW + A G E GG V PV
Sbjct: 17 CELGFGAAGRGRGGGLAEAAAALEGFLADPWLLRPAAAGEGVGVEEEGGVATVQVEVPPV 76
Query: 721 D 723
+
Sbjct: 77 E 77
>03_06_0769 +
36134298-36134356,36134740-36134919,36134975-36135007,
36135008-36135128,36135227-36135266,36135811-36135863,
36135937-36135998,36136354-36136506,36136949-36137160,
36137480-36138972,36140560-36141483,36141734-36142043,
36143818-36143874,36144114-36144167,36144452-36144510
Length = 1269
Score = 30.3 bits (65), Expect = 1.8
Identities = 12/35 (34%), Positives = 16/35 (45%)
Frame = -2
Query: 687 PAWSFGARFPSRAATRAPGPGSHAPERCPPMKDPR 583
P W+ +P + PG + P PPM DPR
Sbjct: 328 PPWAIHPPYPMQGMPYYPGVNPYYPPPYPPMDDPR 362
>10_08_0070 +
14637290-14637766,14639215-14639261,14640043-14640106,
14641022-14641440,14641821-14642055
Length = 413
Score = 29.9 bits (64), Expect = 2.4
Identities = 18/44 (40%), Positives = 22/44 (50%)
Frame = +1
Query: 571 VGRSAGVLHRGAALGSVRARPWGASSRARRKPGAEAPGGRGHES 702
+G S G + +G RA PW S RR PGA A GG+ S
Sbjct: 1 MGASPGFKEFISGVGWGRATPW-RSGDERRPPGAGADGGKAMAS 43
>10_08_0492 +
18292208-18292248,18292874-18293365,18294139-18294319,
18294388-18294442,18294473-18294592,18295335-18295465,
18295691-18295891
Length = 406
Score = 29.5 bits (63), Expect = 3.1
Identities = 14/30 (46%), Positives = 18/30 (60%)
Frame = +2
Query: 173 PPPAPAPGYRQSMVSSRMIIGGAQSACFVP 262
PPP P+P S S +++ G AQSA VP
Sbjct: 3 PPPPPSPSPSSS--SDKLVAGAAQSAPLVP 30
>01_07_0068 -
40861266-40861381,40861469-40861718,40861813-40861914,
40862687-40862759,40863590-40863754,40866380-40866459,
40867565-40867630,40867764-40868123,40868388-40868648
Length = 490
Score = 29.5 bits (63), Expect = 3.1
Identities = 12/19 (63%), Positives = 12/19 (63%)
Frame = -3
Query: 215 TPWTVCSRGRGPGGAPTRV 159
TPW RGRGPGGA V
Sbjct: 114 TPWFRVQRGRGPGGAMATV 132
>09_03_0051 + 11902322-11903125
Length = 267
Score = 29.1 bits (62), Expect = 4.1
Identities = 15/42 (35%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
Frame = -2
Query: 699 LVSAPAWSFGARFPSRAATRAPGPGSHAPERCPP-MKDPRAP 577
+ S P+ SF A P A R P P +P PP +P+ P
Sbjct: 71 IFSFPSASFYAFHPDAAEPRTPTPRKRSPVAAPPAASEPQTP 112
>07_03_1107 - 24024387-24024497,24025799-24026410
Length = 240
Score = 29.1 bits (62), Expect = 4.1
Identities = 15/34 (44%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
Frame = -2
Query: 669 ARFPSRAATRAPG--PGSHAPERCPPMKDPRAPA 574
A P+ AT AP P + AP + PP K +APA
Sbjct: 63 AAAPTTPATPAPAEAPTTPAPTKAPPTKSTKAPA 96
>03_01_0095 + 759530-760123
Length = 197
Score = 29.1 bits (62), Expect = 4.1
Identities = 15/32 (46%), Positives = 18/32 (56%)
Frame = -2
Query: 672 GARFPSRAATRAPGPGSHAPERCPPMKDPRAP 577
G P RAA APG G+ AP R P++ P P
Sbjct: 98 GVAVPVRAAA-APGGGAAAPRRSAPVRVPMWP 128
>12_02_1162 + 26612571-26613986,26614095-26614142
Length = 487
Score = 28.3 bits (60), Expect = 7.2
Identities = 13/30 (43%), Positives = 15/30 (50%)
Frame = -2
Query: 657 SRAATRAPGPGSHAPERCPPMKDPRAPAYS 568
SR R PGP +H E +DP A YS
Sbjct: 30 SREYIRGPGPETHTTESAQDGQDPPAGVYS 59
>11_06_0586 + 25253863-25254285
Length = 140
Score = 28.3 bits (60), Expect = 7.2
Identities = 18/40 (45%), Positives = 20/40 (50%)
Frame = +1
Query: 574 GRSAGVLHRGAALGSVRARPWGASSRARRKPGAEAPGGRG 693
G AGV A L ARP GA +R R+ EA GG G
Sbjct: 94 GGQAGVEEVAATLEEATARPAGARARRHRR--LEAAGGVG 131
>04_01_0253 - 3358090-3359052
Length = 320
Score = 28.3 bits (60), Expect = 7.2
Identities = 17/59 (28%), Positives = 23/59 (38%)
Frame = +1
Query: 544 CEAXSSAHGVGRSAGVLHRGAALGSVRARPWGASSRARRKPGAEAPGGRGHESVPRDPV 720
C+A VGR G A +G+ A A + A GG G + PR+ V
Sbjct: 106 CDAGGGDGDVGRRTGTAKGAAGVGADETEGKAARVTAVFRRNRGAAGGEGDAATPREVV 164
>02_01_0615 -
4604373-4604537,4604618-4604707,4604871-4604989,
4605132-4605234,4605318-4605414,4605512-4605575,
4605673-4605805,4605899-4606143,4606263-4606439,
4607110-4607419
Length = 500
Score = 28.3 bits (60), Expect = 7.2
Identities = 17/40 (42%), Positives = 21/40 (52%)
Frame = -2
Query: 693 SAPAWSFGARFPSRAATRAPGPGSHAPERCPPMKDPRAPA 574
S PA R P+ AA+ +PGPG +P P P APA
Sbjct: 29 SLPANGRTHRSPAAAASPSPGPGP-SPAPATPRVVPPAPA 67
>10_08_0521 +
18500105-18500529,18501216-18501284,18501467-18501555,
18501726-18501838,18502023-18502124,18502576-18502663,
18502795-18503361,18503766-18504149,18504168-18504384,
18504466-18504548,18505174-18505256,18505796-18506032,
18506481-18506658,18506814-18507328,18507740-18507916,
18508385-18508768,18508885-18509031
Length = 1285
Score = 27.9 bits (59), Expect = 9.6
Identities = 18/62 (29%), Positives = 28/62 (45%), Gaps = 1/62 (1%)
Frame = -2
Query: 192 GAGAGGGSDKSPHSLRKTNTKRWWL*ETLY*IKQKHRLRNFTKLKWFYK-NVFACVACRC 16
G G GGG SP ++ + K+ + ++ RNF+ + W K N AC + C
Sbjct: 102 GGGGGGGQQASPATVFRIRLKQPPS-SLRHKMRVPELCRNFSAVAWCGKLNAIACASETC 160
Query: 15 QR 10
R
Sbjct: 161 AR 162
>09_03_0150 -
12781628-12781636,12782491-12782571,12783227-12783304,
12783456-12783508,12784660-12784864
Length = 141
Score = 27.9 bits (59), Expect = 9.6
Identities = 13/31 (41%), Positives = 16/31 (51%)
Frame = -2
Query: 720 DRVTRDGLVSAPAWSFGARFPSRAATRAPGP 628
DR T + VS PAW GA+ + PGP
Sbjct: 28 DRFTYEDAVSHPAWCEGAKAINIPGEAGPGP 58
>08_02_0013 - 11251368-11252867
Length = 499
Score = 27.9 bits (59), Expect = 9.6
Identities = 10/21 (47%), Positives = 15/21 (71%)
Frame = +1
Query: 121 PPSLSVCFSQTVRTLVGAPPG 183
PP+L +C TVR+++ A PG
Sbjct: 234 PPTLVLCLRDTVRSIIVAKPG 254
>08_01_0621 - 5426210-5427787
Length = 525
Score = 27.9 bits (59), Expect = 9.6
Identities = 17/40 (42%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
Frame = -2
Query: 246 DWAPP--MIIREDTMDCL*PGAGAGGGSDKSPHSLRKTNT 133
DW+P M+ R DT+ G G GGG K H R TN+
Sbjct: 233 DWSPRGVMVARGDTVFFCEAGGGEGGGEWKPVHRSR-TNS 271
>07_03_1792 +
29569623-29569737,29569848-29569981,29570117-29570284,
29572817-29573003,29573098-29573422,29573591-29574368,
29574897-29575022
Length = 610
Score = 27.9 bits (59), Expect = 9.6
Identities = 19/58 (32%), Positives = 25/58 (43%)
Frame = -2
Query: 237 PPMIIREDTMDCL*PGAGAGGGSDKSPHSLRKTNTKRWWL*ETLY*IKQKHRLRNFTK 64
P M I T++ PG G G GS K T+R + +QK + RNF K
Sbjct: 511 PNMEIANGTINKSGPGGGNGSGSGSGNDMYLKRFTQREHRVAAVIKFRQKRKERNFGK 568
>02_04_0424 - 22781255-22781278,22785248-22785796
Length = 190
Score = 27.9 bits (59), Expect = 9.6
Identities = 15/31 (48%), Positives = 17/31 (54%)
Frame = +1
Query: 85 VFLFYLVQCFLQPPSLSVCFSQTVRTLVGAP 177
V L Y+ FL P+LS F TVR LV P
Sbjct: 28 VALEYIEHLFLVTPTLSQGFVTTVRNLVSGP 58
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,367,288
Number of Sequences: 37544
Number of extensions: 432016
Number of successful extensions: 2223
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 2037
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2218
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2091906552
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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