Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte16e04
(781 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AK097378-1|BAC05028.1| 289|Homo sapiens protein ( Homo sapiens ... 55 2e-07
BC104469-1|AAI04470.1| 289|Homo sapiens chromosome 19 open read... 54 4e-07
BC104468-1|AAI04469.1| 253|Homo sapiens C19orf19 protein protein. 54 4e-07
BC126248-1|AAI26249.1| 254|Homo sapiens outer dense fiber of sp... 49 2e-05
BC126222-1|AAI26223.1| 254|Homo sapiens outer dense fiber of sp... 49 2e-05
AY713299-1|AAW83203.1| 254|Homo sapiens TISP50 protein. 49 2e-05
AB067774-1|BAB70734.1| 254|Homo sapiens h-SHIPPO 1 protein. 49 2e-05
BC127934-1|AAI27935.1| 109|Homo sapiens LOC440836 protein protein. 46 7e-05
BC127935-1|AAI27936.1| 241|Homo sapiens LOC440836 protein protein. 44 6e-04
BC126449-1|AAI26450.1| 360|Homo sapiens LSM11, U7 small nuclear... 32 2.7
BC051353-1|AAH51353.1| 353|Homo sapiens LSM11 protein protein. 32 2.7
AK095592-1|BAC04581.1| 360|Homo sapiens protein ( Homo sapiens ... 32 2.7
BC113396-1|AAI13397.1| 189|Homo sapiens basic helix-loop-helix ... 31 6.1
BC113394-1|AAI13395.1| 189|Homo sapiens basic helix-loop-helix ... 31 6.1
>AK097378-1|BAC05028.1| 289|Homo sapiens protein ( Homo sapiens
cDNA FLJ40059 fis, clone TCOLN2000139. ).
Length = 289
Score = 55.2 bits (127), Expect = 2e-07
Identities = 48/177 (27%), Positives = 70/177 (39%), Gaps = 14/177 (7%)
Frame = -2
Query: 717 RVTRDGLVSAPAWSFGARFPSRAATRAPGPGSHAPERCPPMKDPRAPAYSMXXXXXXXXX 538
+VTR G PA+S R SR PGPG+++PE+ PP++ PA+++
Sbjct: 95 KVTRFGRSCTPAYSMQGRAKSRGPEVTPGPGAYSPEKVPPVRHRTPPAFTLGCRLPLKPL 154
Query: 537 XXXXXXXXXALK---LGS------GSPAYTMGARV----GFQAKAKSPGPAVYFQRDANV 397
GS SP+YT+ R Q A+ PGP Y DAN
Sbjct: 155 DTSAPAPNAYTMPPLWGSQIFTKPSSPSYTVVGRTPPARPPQDPAEIPGPGQYDSPDANT 214
Query: 396 YRTKPPMYSXXXXXXXXXXXXXXXXXXAY-PPNLYNTKKNPYAYSFGTKHADWAPPM 229
YR + P ++ A+ P + K A+S G +H+ A M
Sbjct: 215 YRQRLPAFTMLGRPRAPRPLEETPGPGAHCPEQVTVNKARAPAFSMGIRHSKRASTM 271
>BC104469-1|AAI04470.1| 289|Homo sapiens chromosome 19 open reading
frame 19 protein.
Length = 289
Score = 54.4 bits (125), Expect = 4e-07
Identities = 48/177 (27%), Positives = 69/177 (38%), Gaps = 14/177 (7%)
Frame = -2
Query: 717 RVTRDGLVSAPAWSFGARFPSRAATRAPGPGSHAPERCPPMKDPRAPAYSMXXXXXXXXX 538
+VTR G PA+S R SR PGPG+++PE+ PP + PA+++
Sbjct: 95 KVTRFGRSCTPAYSMQGRAKSRGPEVTPGPGAYSPEKVPPARHRTPPAFTLGCRLPLKPL 154
Query: 537 XXXXXXXXXALK---LGS------GSPAYTMGARV----GFQAKAKSPGPAVYFQRDANV 397
GS SP+YT+ R Q A+ PGP Y DAN
Sbjct: 155 DTSAPAPNAYTMPPLWGSQIFTKPSSPSYTVVGRTPPARPPQDPAEIPGPGQYDSPDANT 214
Query: 396 YRTKPPMYSXXXXXXXXXXXXXXXXXXAY-PPNLYNTKKNPYAYSFGTKHADWAPPM 229
YR + P ++ A+ P + K A+S G +H+ A M
Sbjct: 215 YRQRLPAFTMLGRPRAPRPLEETPGPGAHCPEQVTVNKARAPAFSMGIRHSKRASTM 271
>BC104468-1|AAI04469.1| 253|Homo sapiens C19orf19 protein protein.
Length = 253
Score = 54.4 bits (125), Expect = 4e-07
Identities = 48/177 (27%), Positives = 69/177 (38%), Gaps = 14/177 (7%)
Frame = -2
Query: 717 RVTRDGLVSAPAWSFGARFPSRAATRAPGPGSHAPERCPPMKDPRAPAYSMXXXXXXXXX 538
+VTR G PA+S R SR PGPG+++PE+ PP + PA+++
Sbjct: 59 KVTRFGRSCTPAYSMQGRAKSRGPEVTPGPGAYSPEKVPPARHRTPPAFTLGCRLPLKPL 118
Query: 537 XXXXXXXXXALK---LGS------GSPAYTMGARV----GFQAKAKSPGPAVYFQRDANV 397
GS SP+YT+ R Q A+ PGP Y DAN
Sbjct: 119 DTSAPAPNAYTMPPLWGSQIFTKPSSPSYTVVGRTPPARPPQDPAEIPGPGQYDSPDANT 178
Query: 396 YRTKPPMYSXXXXXXXXXXXXXXXXXXAY-PPNLYNTKKNPYAYSFGTKHADWAPPM 229
YR + P ++ A+ P + K A+S G +H+ A M
Sbjct: 179 YRQRLPAFTMLGRPRAPRPLEETPGPGAHCPEQVTVNKARAPAFSMGIRHSKRASTM 235
>BC126248-1|AAI26249.1| 254|Homo sapiens outer dense fiber of sperm
tails 3 protein.
Length = 254
Score = 48.8 bits (111), Expect = 2e-05
Identities = 43/178 (24%), Positives = 69/178 (38%), Gaps = 13/178 (7%)
Frame = -2
Query: 717 RVTRDGLVSAPAWSFGARFPSRAATRAPGPGSHAPERCPPMKDPRAPAYSMXXXXXXXXX 538
++ R G PA+S R+ ++ PGPG + PE+ AP++S+
Sbjct: 75 KILRTGKDLGPAYSILGRYQTKTML-TPGPGDYFPEKSTKYVFDSAPSHSISARTKAFRV 133
Query: 537 XXXXXXXXXALKLGSG--------SPAYTMGARV---GFQAKA-KSPGPAVYFQRDANVY 394
L + G P++++ R GF K+PGPA Y Q D V
Sbjct: 134 DSTPGPAAYMLPMVMGPNTVGKASQPSFSIKGRSKLGGFSDDLHKTPGPAAYRQTDVRVT 193
Query: 393 RTKPPMYSXXXXXXXXXXXXXXXXXXAYPPNLYN-TKKNPYAYSFGTKHADWAPPMII 223
+ K P Y+ A+ P TK +FG KH+D+ P+++
Sbjct: 194 KFKAPQYTMAARVEPPGDKTLKPGPGAHSPEKVTLTKPCAPVVTFGIKHSDYMTPLLV 251
>BC126222-1|AAI26223.1| 254|Homo sapiens outer dense fiber of sperm
tails 3 protein.
Length = 254
Score = 48.8 bits (111), Expect = 2e-05
Identities = 43/178 (24%), Positives = 69/178 (38%), Gaps = 13/178 (7%)
Frame = -2
Query: 717 RVTRDGLVSAPAWSFGARFPSRAATRAPGPGSHAPERCPPMKDPRAPAYSMXXXXXXXXX 538
++ R G PA+S R+ ++ PGPG + PE+ AP++S+
Sbjct: 75 KILRTGKDLGPAYSILGRYQTKTML-TPGPGDYFPEKSTKYVFDSAPSHSISARTKAFRV 133
Query: 537 XXXXXXXXXALKLGSG--------SPAYTMGARV---GFQAKA-KSPGPAVYFQRDANVY 394
L + G P++++ R GF K+PGPA Y Q D V
Sbjct: 134 DSTPGPAAYMLPMVMGPNTVGKASQPSFSIKGRSKLGGFSDDLHKTPGPAAYRQTDVRVT 193
Query: 393 RTKPPMYSXXXXXXXXXXXXXXXXXXAYPPNLYN-TKKNPYAYSFGTKHADWAPPMII 223
+ K P Y+ A+ P TK +FG KH+D+ P+++
Sbjct: 194 KFKAPQYTMAARVEPPGDKTLKPGPGAHSPEKVTLTKPCAPVVTFGIKHSDYMTPLLV 251
>AY713299-1|AAW83203.1| 254|Homo sapiens TISP50 protein.
Length = 254
Score = 48.8 bits (111), Expect = 2e-05
Identities = 43/178 (24%), Positives = 69/178 (38%), Gaps = 13/178 (7%)
Frame = -2
Query: 717 RVTRDGLVSAPAWSFGARFPSRAATRAPGPGSHAPERCPPMKDPRAPAYSMXXXXXXXXX 538
++ R G PA+S R+ ++ PGPG + PE+ AP++S+
Sbjct: 75 KILRTGKDLGPAYSILGRYQTKTML-TPGPGDYFPEKSTKYVFDSAPSHSISARTKAFRV 133
Query: 537 XXXXXXXXXALKLGSG--------SPAYTMGARV---GFQAKA-KSPGPAVYFQRDANVY 394
L + G P++++ R GF K+PGPA Y Q D V
Sbjct: 134 DSTPGPAAYMLPMVMGPNTVGKASQPSFSIKGRSKLGGFSDDLHKTPGPAAYRQTDVRVT 193
Query: 393 RTKPPMYSXXXXXXXXXXXXXXXXXXAYPPNLYN-TKKNPYAYSFGTKHADWAPPMII 223
+ K P Y+ A+ P TK +FG KH+D+ P+++
Sbjct: 194 KFKAPQYTMAARVEPPGDKTLKPGPGAHSPEKVTLTKPCAPVVTFGIKHSDYMTPLLV 251
>AB067774-1|BAB70734.1| 254|Homo sapiens h-SHIPPO 1 protein.
Length = 254
Score = 48.8 bits (111), Expect = 2e-05
Identities = 43/178 (24%), Positives = 69/178 (38%), Gaps = 13/178 (7%)
Frame = -2
Query: 717 RVTRDGLVSAPAWSFGARFPSRAATRAPGPGSHAPERCPPMKDPRAPAYSMXXXXXXXXX 538
++ R G PA+S R+ ++ PGPG + PE+ AP++S+
Sbjct: 75 KILRTGKDLGPAYSILGRYQTKTML-TPGPGDYFPEKSTKYVFDSAPSHSISARTKAFRV 133
Query: 537 XXXXXXXXXALKLGSG--------SPAYTMGARV---GFQAKA-KSPGPAVYFQRDANVY 394
L + G P++++ R GF K+PGPA Y Q D V
Sbjct: 134 DSTPGPAAYMLPMVMGPNTVGKASQPSFSIKGRSKLGGFSDDLHKTPGPAAYRQTDVRVT 193
Query: 393 RTKPPMYSXXXXXXXXXXXXXXXXXXAYPPNLYN-TKKNPYAYSFGTKHADWAPPMII 223
+ K P Y+ A+ P TK +FG KH+D+ P+++
Sbjct: 194 KFKAPQYTMAARVEPPGDKTLKPGPGAHSPEKVTLTKPCAPVVTFGIKHSDYMTPLLV 251
>BC127934-1|AAI27935.1| 109|Homo sapiens LOC440836 protein protein.
Length = 109
Score = 45.6 bits (103), Expect(2) = 7e-05
Identities = 21/42 (50%), Positives = 26/42 (61%)
Frame = -2
Query: 690 APAWSFGARFPSRAATRAPGPGSHAPERCPPMKDPRAPAYSM 565
APA++FGARFP++ T PGPG P R APAYS+
Sbjct: 28 APAFTFGARFPTQQTTCGPGPGHLVPARMTVRGTDGAPAYSI 69
Score = 21.0 bits (42), Expect(2) = 7e-05
Identities = 9/22 (40%), Positives = 13/22 (59%)
Frame = -2
Query: 492 GSPAYTMGARVGFQAKAKSPGP 427
G+PAY++ R A +PGP
Sbjct: 63 GAPAYSIYGRPRRSAPFLTPGP 84
>BC127935-1|AAI27936.1| 241|Homo sapiens LOC440836 protein protein.
Length = 241
Score = 44.0 bits (99), Expect = 6e-04
Identities = 45/181 (24%), Positives = 70/181 (38%), Gaps = 13/181 (7%)
Frame = -2
Query: 717 RVTRDGLVSAPAWSFGARFPSRAATRAPGPGSHAPERCPPMKDPRAPAYSMXXXXXXXXX 538
R+T G APA+S R A PGPG + PER P AP +++
Sbjct: 63 RMTVRGTDGAPAYSIYGRPRRSAPFLTPGPGRYFPERAGNATYPSAPRHTIAPRNWGVQA 122
Query: 537 XXXXXXXXXALK---LGS------GSPAYTM-GARVG---FQAKAKSPGPAVYFQRDANV 397
LG +P ++ G R F+ +K+PGP Y V
Sbjct: 123 EQQSPGPAAYTVPSLLGPRVIGKVSAPTCSIYGRRAAGSFFEDLSKTPGPCAYQVVSPGV 182
Query: 396 YRTKPPMYSXXXXXXXXXXXXXXXXXXAYPPNLYNTKKNPYAYSFGTKHADWAPPMIIRE 217
Y+++ P ++ AY N+ +K P +SFG +H+D+ P++
Sbjct: 183 YKSRAPQFTILARTSLPQDNTRKPGPAAY--NVDQHRK-PRGWSFGIRHSDYLAPLVTDA 239
Query: 216 D 214
D
Sbjct: 240 D 240
Score = 31.9 bits (69), Expect = 2.7
Identities = 25/87 (28%), Positives = 33/87 (37%), Gaps = 6/87 (6%)
Frame = -2
Query: 660 PSRAATRAPGPGSHAPERCPPMKDPRAPAYSMXXXXXXXXXXXXXXXXXXALKLGS---- 493
P+ T PGPG P R APAYS+ +
Sbjct: 46 PTPQTTCGPGPGHLVPARMTVRGTDGAPAYSIYGRPRRSAPFLTPGPGRYFPERAGNATY 105
Query: 492 -GSPAYTMGAR-VGFQAKAKSPGPAVY 418
+P +T+ R G QA+ +SPGPA Y
Sbjct: 106 PSAPRHTIAPRNWGVQAEQQSPGPAAY 132
>BC126449-1|AAI26450.1| 360|Homo sapiens LSM11, U7 small nuclear
RNA associated protein.
Length = 360
Score = 31.9 bits (69), Expect = 2.7
Identities = 22/43 (51%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Frame = +1
Query: 556 SSAHGVGRSAGVLHRGAALGS-VRARPWGASSRARRKPGAEAP 681
+ G GR G RGAA GS V A P G S R RR+P A AP
Sbjct: 65 TGVRGGGRGRGRA-RGAAAGSGVPAAP-GPSGRTRRRPDAPAP 105
>BC051353-1|AAH51353.1| 353|Homo sapiens LSM11 protein protein.
Length = 353
Score = 31.9 bits (69), Expect = 2.7
Identities = 22/43 (51%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Frame = +1
Query: 556 SSAHGVGRSAGVLHRGAALGS-VRARPWGASSRARRKPGAEAP 681
+ G GR G RGAA GS V A P G S R RR+P A AP
Sbjct: 58 TGVRGGGRGRGRA-RGAAAGSGVPAAP-GPSGRTRRRPDAPAP 98
>AK095592-1|BAC04581.1| 360|Homo sapiens protein ( Homo sapiens
cDNA FLJ38273 fis, clone FCBBF3003305. ).
Length = 360
Score = 31.9 bits (69), Expect = 2.7
Identities = 22/43 (51%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Frame = +1
Query: 556 SSAHGVGRSAGVLHRGAALGS-VRARPWGASSRARRKPGAEAP 681
+ G GR G RGAA GS V A P G S R RR+P A AP
Sbjct: 65 TGVRGGGRGRGRA-RGAAAGSGVPAAP-GPSGRTRRRPDAPAP 105
>BC113396-1|AAI13397.1| 189|Homo sapiens basic helix-loop-helix
domain containing, class B, 8 protein.
Length = 189
Score = 30.7 bits (66), Expect = 6.1
Identities = 16/36 (44%), Positives = 22/36 (61%), Gaps = 5/36 (13%)
Frame = +1
Query: 619 VRARPWGASSRA-----RRKPGAEAPGGRGHESVPR 711
+R+RP A++RA RR+PG PGGR S+ R
Sbjct: 41 LRSRPARAAARAPGEGRRRRPGPSGPGGRRDSSIQR 76
>BC113394-1|AAI13395.1| 189|Homo sapiens basic helix-loop-helix
domain containing, class B, 8 protein.
Length = 189
Score = 30.7 bits (66), Expect = 6.1
Identities = 16/36 (44%), Positives = 22/36 (61%), Gaps = 5/36 (13%)
Frame = +1
Query: 619 VRARPWGASSRA-----RRKPGAEAPGGRGHESVPR 711
+R+RP A++RA RR+PG PGGR S+ R
Sbjct: 41 LRSRPARAAARAPGEGRRRRPGPSGPGGRRDSSIQR 76
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 100,951,075
Number of Sequences: 237096
Number of extensions: 2180382
Number of successful extensions: 9983
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 8369
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9951
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 9478778060
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -