Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte16e04
         (781 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z34799-2|CAA84318.1|  692|Caenorhabditis elegans Hypothetical pr...    30   1.6  
Z70208-2|CAA94136.1|  304|Caenorhabditis elegans Hypothetical pr...    29   4.9  
U41274-5|AAA82461.2|  571|Caenorhabditis elegans Nematode astaci...    28   8.6  

>Z34799-2|CAA84318.1|  692|Caenorhabditis elegans Hypothetical
           protein F34D10.4 protein.
          Length = 692

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 16/38 (42%), Positives = 19/38 (50%)
 Frame = -2

Query: 678 SFGARFPSRAATRAPGPGSHAPERCPPMKDPRAPAYSM 565
           S GAR PSRA   +         R  P K P APAY++
Sbjct: 381 SVGARAPSRAPAPSSTSRETRSTRRSPSKGPSAPAYTL 418


>Z70208-2|CAA94136.1|  304|Caenorhabditis elegans Hypothetical
           protein F54B11.2 protein.
          Length = 304

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 18/43 (41%), Positives = 21/43 (48%)
 Frame = +2

Query: 575 AGARGSFIGGQRSGACEPGPGARVAARDGNLAPKLQAGADTSP 703
           AGA G+  GGQ  G C PGP   VA   G      + GA  +P
Sbjct: 92  AGA-GASSGGQCEGCCNPGPPG-VAGNPGKPGKPGKPGAPGNP 132


>U41274-5|AAA82461.2|  571|Caenorhabditis elegans Nematode astacin
           protease protein15 protein.
          Length = 571

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = +2

Query: 149 KLCGLLSEPPPAPAPGYRQSMVSSRMII 232
           K CG   +PPP   P  R ++V++R ++
Sbjct: 466 KSCGFCFKPPPTEIPDNRPTVVTTRPLV 493


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,550,650
Number of Sequences: 27780
Number of extensions: 284271
Number of successful extensions: 1089
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 943
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1088
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1882685842
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)